Carg01308 (gene) Silver-seed gourd

Overview
NameCarg01308
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAuxin-induced protein
LocationCucurbita_argyrosperma_scaffold_002 : 2127095 .. 2128749 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTTCTTCTTCGCCGGTATCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCGCATTTTCTGCGCTTGGATTCGCCTCACTCTTCCACCTCTCCTCCATTGTTGTACAATTCCTTGTCTTTATTATAATTCTTCATCCATTCCATTTCAGACATTGTAAAACACGTTTTCCTCGAATTCGAATTTTAACCTCACCGTTTCCTGTTGTCTTGACCCTTTTTTTTCCCTCCTTTATTGTCAATCAGGTAATATCATCATTGTTGTTCCCTTGCGTTGCATTGCATTGCAACCTTCTTACAGACTTTGATTCTGGTTTTGAATCTCAATGTGAGGAACGAATGGTGAGAGGGAATTTTAGTCTCTTGTACATGATTTGATGAATCAAATGGATCCTACTCTGATTATTATTGTTTCTTTATTTGTTGGTTGTATGGAGCATGCTTGTGTTTCTCTTTCTTTCTTCTTGCTATAGTACAGCCTTTCCTTTTATTTCCTCTACTTGATTTTCTACTTTGAGCTTTTTACTATTTTAGTTTGTTAGTGTCATTCAAAACTATTCTATTACCGGCGATTTCAACTTCTAGGTAGTGGTGTTCTGATGAGAATTGTGTTTCTGGAATTAGACACAGCGAGTTCTGTCCTGGGGTTCTGTTCAATTGTGGTGAACGTCTAGAAATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCACAATTAACCCGGTATCCAAAGCAGCAGCCCATGAAAATCAAAGCCAAAATCTAAATCAAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGTTTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAACATCCACCCGACGTCCCAAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTCATCATTCCCACTAGCTATCTTAGCCATTCGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTTGATCATAGCGGCGGCCTCACATTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTGCATGGAAAGCCAGCACAAGGATCATCCTGATGACCACACCCCAGGTAATAAATTGTATTTGTATGCATACCCATTTGGTTTGCAAAGCTGATAGTTGTTGACTTTGGTATGAATTCCATTAGTATTATGACATGAATAACATGCTTCCTGTTATTGACTTCGGTTGCAGCTGGGAGTTCCTTAACCATGGAAGGATAAAAAAAAAAAATGGTTGTGATCCACAGCAGAGGGGGCGCTGTTTGCAAAGGCAGATGGATGTGTGTGTGCCTGCCACACATGAGATATGTTGTGAAATTGAAGTGTTGTGGTTTTGGTTTTGGTTTTGGTTTTGGTTTGGAGTCAGAAAAATTAGGGATGTGTTTAAGTAGTAGTTAGAAAAGTGGAGGATTAATGTACCGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGCTTTGTTTTTTGCTTTTGCTTTTGTTTTTGGGAATACCCTCTCAGGGGAGATGTGAACTTCCATTTGCTTCCCTGTATTTGAATGTGAAGCACATGATTGTTTGA

mRNA sequence

ATGCTCTTCTTCTTCGCCGTGTCATTCAAAACTATTCTATTACCGGCGATTTCAACTTCTAGACACAGCGAGTTCTGTCCTGGGGTTCTGTTCAATTGTGGTGAACGTCTAGAAATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCACAATTAACCCGGTATCCAAAGCAGCAGCCCATGAAAATCAAAGCCAAAATCTAAATCAAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGGGAGATGTGAACTTCCATTTGCTTCCCTGTATTTGAATGTGAAGCACATGATTGTTTGA

Coding sequence (CDS)

ATGCTCTTCTTCTTCGCCGTGTCATTCAAAACTATTCTATTACCGGCGATTTCAACTTCTAGACACAGCGAGTTCTGTCCTGGGGTTCTGTTCAATTGTGGTGAACGTCTAGAAATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCACAATTAACCCGGTATCCAAAGCAGCAGCCCATGAAAATCAAAGCCAAAATCTAAATCAAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGGGAGATGTGAACTTCCATTTGCTTCCCTGTATTTGAATGTGAAGCACATGATTGTTTGA

Protein sequence

MLFFFAVSFKTILLPAISTSRHSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKRLTNGRCELPFASLYLNVKHMIV
Homology
[Close]
BLAST of Carg01308 vs. NCBI nr
Match: XP_023539667.1 (uncharacterized protein LOC111800282 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINP+SKAAAHENQS
Sbjct: 10  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQS 69

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QNLNQNNGILSPAINKRLTN  C
Sbjct: 70  QNLNQNNGILSPAINKRLTNVLC 92

[Close]
BLAST of Carg01308 vs. NCBI nr
Match: XP_022940030.1 (uncharacterized protein LOC111445786 isoform X1 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 7.8e-38
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINP+SKAAAHENQS
Sbjct: 10  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQS 69

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QNLN NNGILSPAINKRLTN  C
Sbjct: 70  QNLNLNNGILSPAINKRLTNVLC 92

[Close]
BLAST of Carg01308 vs. NCBI nr
Match: XP_022971372.1 (uncharacterized protein LOC111470119 isoform X1 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 3.3e-36
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 23  SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQ 82
           SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGV INP+SKAAAHEN SQ
Sbjct: 149 SEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVAINPISKAAAHENPSQ 208

Query: 83  NLNQNNGILSPAINKRLTNGRC 105
           N+NQNNGILSPAINKRLTN  C
Sbjct: 209 NINQNNGILSPAINKRLTNVLC 230

[Close]
BLAST of Carg01308 vs. NCBI nr
Match: XP_008460569.1 (PREDICTED: auxin-responsive protein SAUR71 isoform X1 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 2.1e-30
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0 

Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           H EFC GVL NCGERLEMDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN S
Sbjct: 3   HCEFCAGVLLNCGERLEMDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGS 62

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QN NQN+GILSPAINKRLTN  C
Sbjct: 63  QNQNQNHGILSPAINKRLTNVLC 84

[Close]
BLAST of Carg01308 vs. NCBI nr
Match: XP_023539668.1 (auxin-responsive protein SAUR71-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023539669.1 auxin-responsive protein SAUR71-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023539670.1 auxin-responsive protein SAUR71-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 6.2e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDENGGIKLTGIRQIVRLKETLQHWQGVTINP+SKAAAHENQSQNLNQNNGILSPAINKR
Sbjct: 1   MDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQSQNLNQNNGILSPAINKR 60

Query: 99  LTNGRC 105
           LTN  C
Sbjct: 61  LTNVLC 66

[Close]
BLAST of Carg01308 vs. TAIR10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-10
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDEN   KLTGIRQIVRLKE LQ WQ VTI P S+        Q +     ++SPAINKR
Sbjct: 1   MDENNAAKLTGIRQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAV----AMISPAINKR 57

Query: 99  L 100
           L
Sbjct: 61  L 57

[Close]
BLAST of Carg01308 vs. TAIR10
Match: AT3G43120.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-09
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDEN   KLTGI+QIVRLKE LQ WQ VTI   S     ++      ++  I+SP INKR
Sbjct: 1   MDENNAAKLTGIKQIVRLKEILQKWQTVTIGSKS-----DDGELGARKHTAIISPVINKR 56

Query: 99  L 100
           L
Sbjct: 61  L 56

[Close]
BLAST of Carg01308 vs. TrEMBL
Match: tr|A0A1S3CCR9|A0A1S3CCR9_CUCME (auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499361 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0 

Query: 22  HSEFCPGVLFNCGERLEMDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQS 81
           H EFC GVL NCGERLEMDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN S
Sbjct: 3   HCEFCAGVLLNCGERLEMDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGS 62

Query: 82  QNLNQNNGILSPAINKRLTNGRC 105
           QN NQN+GILSPAINKRLTN  C
Sbjct: 63  QNQNQNHGILSPAINKRLTNVLC 84

[Close]
BLAST of Carg01308 vs. TrEMBL
Match: tr|A0A1S3CD75|A0A1S3CD75_CUCME (auxin-responsive protein SAUR71 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499361 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-21
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN SQN NQN+GILSPAINKR
Sbjct: 1   MDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 60

Query: 99  LTNGRC 105
           LTN  C
Sbjct: 61  LTNVLC 65

[Close]
BLAST of Carg01308 vs. TrEMBL
Match: tr|A0A0A0KRA4|A0A0A0KRA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534970 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-21
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN SQN NQN+GILSPAINKR
Sbjct: 1   MDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 60

Query: 99  LTNGRC 105
           LTN  C
Sbjct: 61  LTNVLC 65

[Close]
BLAST of Carg01308 vs. TrEMBL
Match: tr|A0A0A0LB03|A0A0A0LB03_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346940 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-21
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDENGGIK+ GIRQIVRLKETLQHWQGVT+ P SKAAAHEN SQN NQN+GILSPAINKR
Sbjct: 1   MDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 60

Query: 99  LTNGRC 105
           LTN  C
Sbjct: 61  LTNVLC 65

[Close]
BLAST of Carg01308 vs. TrEMBL
Match: tr|V4TZU7|V4TZU7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009722mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 39  MDENGGIKLTGIRQIVRLKETLQHWQGVTINPVSKAAAHENQSQNLNQNNGILSPAINKR 98
           MDENGG KL GIRQIV+LKE LQ WQ VT+      ++ +  S   + N+G +SP INKR
Sbjct: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTL------SSPKPSSSQSSPNHGGISPVINKR 60

Query: 99  LTNGRCELPFASLY 113
           L N  C+    S Y
Sbjct: 61  LANVPCDSDEESCY 68

The following BLAST results are available for this feature:
BLAST of Carg01308 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023539667.11.2e-3896.39uncharacterized protein LOC111800282 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022940030.17.8e-3895.18uncharacterized protein LOC111445786 isoform X1 [Cucurbita moschata][more]
XP_022971372.13.3e-3692.68uncharacterized protein LOC111470119 isoform X1 [Cucurbita maxima][more]
XP_008460569.12.1e-3084.34PREDICTED: auxin-responsive protein SAUR71 isoform X1 [Cucumis melo][more]
XP_023539668.16.2e-2795.45auxin-responsive protein SAUR71-like isoform X2 [Cucurbita pepo subsp. pepo] >XP... [more]
BLAST of Carg01308 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20810.24.9e-1057.38SAUR-like auxin-responsive protein family [more]
AT3G43120.17.1e-0952.46SAUR-like auxin-responsive protein family [more]
BLAST of Carg01308 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg01308 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CCR9|A0A1S3CCR9_CUCME1.4e-3084.34auxin-responsive protein SAUR71 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034993... [more]
tr|A0A1S3CD75|A0A1S3CD75_CUCME4.4e-2184.85auxin-responsive protein SAUR71 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034993... [more]
tr|A0A0A0KRA4|A0A0A0KRA4_CUCSA4.4e-2184.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534970 PE=4 SV=1[more]
tr|A0A0A0LB03|A0A0A0LB03_CUCSA4.4e-2184.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346940 PE=4 SV=1[more]
tr|V4TZU7|V4TZU7_9ROSI1.9e-0850.00Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009722mg PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01308-RACarg01308-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg01308CmaCh06G000050Cucurbita maxima (Rimu)carcmaB0216
Carg01308CmoCh06G000050Cucurbita moschata (Rifu)carcmoB0227
Carg01308Cp4.1LG08g13320Cucurbita pepo (Zucchini)carcpeB0234
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None