Carg01235 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01235
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	outer envelope pore protein 16-3, chloroplastic/mitochondrial
Location	Cucurbita_argyrosperma_scaffold_002 : 1691329 .. 1694894 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTCTGATCTACAATGCTTTTGGAGCTACGATGATCGCACTCGATGTAGTTGTCAATGCAATTCGTCTAGGTTTAGCCTCTGCGGTTCGGTCTGCATGTCATTTTGTCGCGGAAATTCATTTTCATGCTTCTATTTTTGAGGATATAGAGAAATTAGATTGTATTCTGCAGGTGCACGAGTTAGGGGTAGTCGTTTGGGGTTTCCGGCTTGATCTGAACGGTTAAATTTACGAATTGTTCATTATCTAGCGGGTTATTAGTACGTTTGGATCTAGCTGTTCGTGATTCTCTGGATATTAGAAATTCTGCTGAGATAACGTAAAGGAATGGGATGAATACGTAGGAGGGGGGCTATATAATCTAATTAATTTCCATTTAATACAGATGATTTCATTATGAGATAGTCAGAAAAATTTAGATCTTCTTTGGTCGTGGTTATTGAGGTTTGCGTCTTGTTTCTTTTCTTTCTGCAGCTTTGGCCATTGTCAGTAACTTCAAAAATACCCATGGATGCTTCAGAGCGTAGGTACTTGGAGGATGATGATACATCAATAATGAAAATGATTAAAGGAGCAACTACAGGATTTGTTTCTGGCACCATTTTTGGGACAATTGCTGCCACTTGGTATGATGTACCCCGTGTTGAGAGAAATGTTGCTTTGCCTGGGCTTGTGAGAACCTTGAAAATGATGGGAAACTATGGGATGACGTTTGCTGCTATTGGAGGGGTATACATTGGCGTTGAGCAGCTTGTGCAGAATTATAGAATGAAGAGAGACTTCGTTAATGGAGCTGTAGGTGGTTTTGCAGCTGGAGCATCTGTTCTCGGATACAAAGGTGAAACTTTCTACTCTTTCTAGATCTGGATGCAGTCGCAATTTCTATTCTTTCATTAACAAATGTGAAGAAAGTTTTTTGTATGATTTGTTTCTCTTTCTTTCCGCTTTCCTCTCTTGGAGAATGGGTTAGAATTTTATTTGGCATATTTATGTGAACATATTATAGAATGGGATAAATCCATACCATCCGCAATTTCTATTCTTTCATAAATTGACCCAATATGAACATATTTTCTAATTTTATAGAGGAAAGACTAATAGAGGCTATTTTGTTTTACAAAAGTTAACAATAAACTAACAATAGGGATCAATTTTATGCTTTATTGAAAGTTTAAGTACTAAGTATGGATTTTTACAAGTATAGGGACCAAAATGGAACGAAGCCCAAATTATAGGACATAGTTGGTATTACCTTTTCTTTCTGCGTGGTTGGAAGTGTGTTGAGTAGGTTGATTGAACTTGATCTTCATGGGGCCTTCTTGAATATTTTTTCCTTGGCGAGAACAAGGGGCATATTTCACATACTCAATTTATGGATATTACTTCACTTCTATCAAAAGATGATAGGACAGGGTTATAGGATTTTTTCAAGCTACTTAGAATTTTTAAGATTTCTTCGGGCATAGAGATAAATTTGAAAAACATTAGGTTTGTGGTTTTTAATATTCCTTTTGCTGAAGTGAACTCTTGCAAAAAAAAAATGTGGTGCAAGCTTGTAGCTATCCAGTCTCTTACTCGAGGATGATGACCCTTGGGTGATAAATCCATGAAGGTTGGAGTCTTGGAAGCCTGTTATAGAGGTCCTGTATAAGTTGGAAAATGGGAATTTTACCTTTCTAATGGTGGGAGATTGACTCTTTTTGAGGCAGTTCTTACGAACTTACCTACCTATTTCATGTCGAGTTTTTCTATGCTTAGGAAAGGGGCGGTAGGTTTAGGGGAGAAAGTTCAGGAACTGCTTTCGGGATGGTAATTTGATAGTTTTTAAGAATCAAATCAGATTTGACAGGAAGTGTTCTCTAGCATTATAGAAGATTTGACAGGAAGTGTTCTCTAGCATTATAGAAGAATGGAAGATGAGCGGTTACTATCTAGACTTCATTGTCCACGCCTCTAAAGAAAAGGAAAAGGCATTCAACTTGGATACCTCTAGCCAATCATCCAATTCAGAATAATTAACAAAGATCTAACATTGAACACCTATTAAAAGCATTCCAGAATTGTCTAACCATGTTTACCATCACCTTACTGCTTTGGAGCATTGAGTCTCAGAAAAAAGGACAGGAGAGTAAATTATCCAGATGTCATCAAAAAACTTAACTCTATTGCCTTTTCCCACCTAGAATATGGAACCAAAGGCTGCAGGATCCACAATATACCTCAGCTAGGAAATATGGAATCAAGTGCTGCATGGCATTTCTACATGTGGTCATCCACCTGACTTATCCTTCCCACACTTGCTAGTGACATTTTTCTAGTGACATTTTTGTGCCATGGTGCACTGCTTTCTAGAAGGAACCTTCGTATGCATTTGGTTAAAGAAGTGCACTTCCACTTATGTACATTGGTGAAGCTACAATCACCATCCTCGAAAGAGCAAGAGGCTCAACTCTTTATTTCATCTATAGACGACCTCCATCCTAGTCTGCACCTCGCGAAAGAAGTCCCTCTCTTATTTTTATCAATGCTTCGATAAACTGGAGCCTTGAAGACACAAATAACTAGTCTGCATGTTAGCAACCACTCCTTAGTTAGGGCAGAACCATAAATTTGGAGGGCAAAAACTTTCTATGCGAACTTAATTATAGGAGGCAAATTAGTGGAGAAGTGCTACATTTTTTTTCTATATATATATATCATCTGAGACGAACAAGGGAGAGTTTCCAGTCGTCCTATAGTACCTATATCAGCCCTCCGTCAACACTAGAAATTTCTCTATAATTACTTCTTTAATATTGTTGGACTTCATATCAGTAAAAAATAATGATGACGAAGCTCAATAAATGGAAGTAGTATCCAACCTACTGTATTACTAGAAATTTCCCTCCAAGAGGGGTGATTTCTCGATCTGGATGTGTAGTTTCTTGCCATTTCTTGTTAGTTATACTTATAACAAGACCTATCAGTATCACCATATGATTGTAAATTTGAAGTGCCATTCCGATCTTTCTGATCCATTGCTTAGGATGTGGTTCTAATGTGTTTTCTTTTCATGTCTCTAATAAGTTAACTCCCTGTGAAAGTGGTTAATTGATGCCGTTGTTTTGTTTCAGGAAAAAGCATTTCAACAGCCATTTCCGCTGGAGCTGCTTTGGCAGTTACATCTGCATTAATTGATGTTGGTGGTCAAACAACAAGAATTGACAATGGAAAGGAGTACTACCCTTACACCACCAAGAAAAGATCCCACATTGAGTAGCATTAGTAATCTTTGCAGCAATTGGGAAAGAAGATCTTGGCTGGCTTTCTCTTTTGGGTTTTCCAGAGATGTAATTATACTCTCAGTTCTCTCGAGTAAGCTGAACAGGGAATGTTGTATGAATAAAGGTACCATCAATTTGTTCAACTCGTTTTTGGTTAGTTTTGGATTTACCACCATTGATCTTTGTTTGGAAGCTTTTCAATTTGGGATAACTGTGAAGGTGGTTGAGAGGAATTGTCAAATGACACTATTTTTCTTTTCAGGGCAAATAATATGATCCCATCATAATTTTATATCTC

mRNA sequence

ATGAATTTTCTGATCTACAATGCTTTTGGAGCTACGATGATCGCACTCGATGTAGTTGTCAATGCAATTCGTCTAGGTTTAGCCTCTGCGCTTTGGCCATTGTCAGTAACTTCAAAAATACCCATGGATGCTTCAGAGCGTAGGTACTTGGAGGATGATGATACATCAATAATGAAAATGATTAAAGGAGCAACTACAGGATTTGTTTCTGGCACCATTTTTGGGACAATTGCTGCCACTTGGTATGATGTACCCCGTGTTGAGAGAAATGTTGCTTTGCCTGGGCTTGTGAGAACCTTGAAAATGATGGGAAACTATGGGATGACGTTTGCTGCTATTGGAGGGGTATACATTGGCGTTGAGCAGCTTGTGCAGAATTATAGAATGAAGAGAGACTTCGTTAATGGAGCTGTAGGTGGTTTTGCAGCTGGAGCATCTGTTCTCGGATACAAAGGAAAAAGCATTTCAACAGCCATTTCCGCTGGAGCTGCTTTGGCAGTTACATCTGCATTAATTGATGTTGGTGGTCAAACAACAAGAATTGACAATGGAAAGGAGTACTACCCTTACACCACCAAGAAAAGATCCCACATTGAGTAGCATTAGTAATCTTTGCAGCAATTGGGAAAGAAGATCTTGGCTGGCTTTCTCTTTTGGGTTTTCCAGAGATGTAATTATACTCTCAGTTCTCTCGAGTAAGCTGAACAGGGAATGTTGTATGAATAAAGGTACCATCAATTTGTTCAACTCGTTTTTGGTTAGTTTTGGATTTACCACCATTGATCTTTGTTTGGAAGCTTTTCAATTTGGGATAACTGTGAAGGTGGTTGAGAGGAATTGTCAAATGACACTATTTTTCTTTTCAGGGCAAATAATATGATCCCATCATAATTTTATATCTC

Coding sequence (CDS)

ATGAATTTTCTGATCTACAATGCTTTTGGAGCTACGATGATCGCACTCGATGTAGTTGTCAATGCAATTCGTCTAGGTTTAGCCTCTGCGCTTTGGCCATTGTCAGTAACTTCAAAAATACCCATGGATGCTTCAGAGCGTAGGTACTTGGAGGATGATGATACATCAATAATGAAAATGATTAAAGGAGCAACTACAGGATTTGTTTCTGGCACCATTTTTGGGACAATTGCTGCCACTTGGTATGATGTACCCCGTGTTGAGAGAAATGTTGCTTTGCCTGGGCTTGTGAGAACCTTGAAAATGATGGGAAACTATGGGATGACGTTTGCTGCTATTGGAGGGGTATACATTGGCGTTGAGCAGCTTGTGCAGAATTATAGAATGAAGAGAGACTTCGTTAATGGAGCTGTAGGTGGTTTTGCAGCTGGAGCATCTGTTCTCGGATACAAAGGAAAAAGCATTTCAACAGCCATTTCCGCTGGAGCTGCTTTGGCAGTTACATCTGCATTAATTGATGTTGGTGGTCAAACAACAAGAATTGACAATGGAAAGGAGTACTACCCTTACACCACCAAGAAAAGATCCCACATTGAGTAG

Protein sequence

MNFLIYNAFGATMIALDVVVNAIRLGLASALWPLSVTSKIPMDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLKMMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISAGAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE

Homology

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BLAST of Carg01235 vs. NCBI nr
Match: XP_022948275.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_023540815.1 outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.2 bits (796), Expect = 2.5e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

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BLAST of Carg01235 vs. NCBI nr
Match: XP_022971491.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 307.4 bits (786), Expect = 3.6e-80
Identity = 156/158 (98.73%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTSIMK IKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSIMKTIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           G ALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GVALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

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BLAST of Carg01235 vs. NCBI nr
Match: XP_022983139.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_023528706.1 outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.6 bits (784), Expect = 6.1e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTSIMK IKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSIMKTIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGA+GGFAAGASVLGYKGKSI TAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAIGGFAAGASVLGYKGKSIPTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

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BLAST of Carg01235 vs. NCBI nr
Match: XP_022935378.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 2.3e-79
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDT IMK IKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTPIMKTIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGA+GGFAAGASVLGYKGKSI TAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAIGGFAAGASVLGYKGKSIPTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

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BLAST of Carg01235 vs. NCBI nr
Match: XP_022154281.1 (outer envelope pore protein 16-3, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 152/158 (96.20%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTS+MK IKGATTGFV+GTIFGTIAATWYDVPRVERNVALPG +RTLK
Sbjct: 1   MDASERRYLEDDDTSMMKTIKGATTGFVAGTIFGTIAATWYDVPRVERNVALPGFLRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTS LIDVGGQTTRIDNGKEYYPYTTKKRSHIE
Sbjct: 121 GAALAVTSTLIDVGGQTTRIDNGKEYYPYTTKKRSHIE 158

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BLAST of Carg01235 vs. TAIR10
Match: AT2G42210.2 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 243.8 bits (621), Expect = 8.9e-65
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE++D  +MK IKG+ TGF +GTI+GTI ATW DVPRVERNVALPGL+RTLK
Sbjct: 15  MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 74

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMG +G+TFAAIGGVYIGVEQLVQN+R KRDF NGA+GGF AGASVLGY+ +SI TAI+A
Sbjct: 75  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 134

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 135 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 172

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BLAST of Carg01235 vs. TAIR10
Match: AT3G57900.1 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 8.4e-07
Identity = 33/96 (34.38%), Postives = 42/96 (43.75%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE+++ ++MK  K A TGF +G                              
Sbjct: 1   MDPTEMRYLEEENGAMMKTFKDAVTGFATG------------------------------ 56

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGA 138
                         V+IGVEQLVQN+R KRDF NGA
Sbjct: 61  ----------KTSLVFIGVEQLVQNFRAKRDFFNGA 56

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BLAST of Carg01235 vs. TAIR10
Match: AT2G28900.1 (outer plastid envelope protein 16-1)

HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 96  LVRTLKMMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGA--SVLGYKGK 155
           L   LK +   G+ + A GGVYIG E  ++  R  RD+ N  + G A GA  S +G KGK
Sbjct: 63  LEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGK 122

Query: 156 -SISTAISAGAALAVTSALID 174
            +I      G ALA  S  ++
Sbjct: 123 DTIVIDAILGGALATASQFVN 143

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BLAST of Carg01235 vs. Swiss-Prot
Match: sp|O48528|OP163_ARATH (Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OEP163 PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD +E RYLE++D  +MK IKG+ TGF +GTI+GTI ATW DVPRVERNVALPGL+RTLK
Sbjct: 1   MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMG +G+TFAAIGGVYIGVEQLVQN+R KRDF NGA+GGF AGASVLGY+ +SI TAI+A
Sbjct: 61  MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GA LAVTSALID GGQTTR+DNG+EYYPYT +KR+  +
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEAD 158

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BLAST of Carg01235 vs. TrEMBL
Match: tr|A0A1S3B800|A0A1S3B800_CUCME (outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486783 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.2e-77
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTS+MK IKGAT GFVSGTIFGTI ATWYDVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSLMKTIKGATMGFVSGTIFGTIVATWYDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           +MGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTA+SA
Sbjct: 61  LMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTALSA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALA TSA+ID+GGQTTRID GKEYYPYTTKKRSHIE
Sbjct: 121 GAALAFTSAVIDIGGQTTRIDTGKEYYPYTTKKRSHIE 158

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BLAST of Carg01235 vs. TrEMBL
Match: tr|A0A0A0LBC6|A0A0A0LBC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809960 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 3.0e-75
Identity = 144/158 (91.14%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MDASERRYLEDDDTS+MK IKGAT GFVSGTIFGTI ATW+DVPRVERNVALPGLVRTLK
Sbjct: 1   MDASERRYLEDDDTSLMKTIKGATMGFVSGTIFGTIVATWHDVPRVERNVALPGLVRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           +MGNYGMTFAAIGGVYIGVEQL+QNYRMKRDFVNGAVGGF AGASVLGYKGKSISTA+SA
Sbjct: 61  IMGNYGMTFAAIGGVYIGVEQLLQNYRMKRDFVNGAVGGFTAGASVLGYKGKSISTALSA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALA TS++ID+GGQTTRID GKEYYPYTTKKRSHIE
Sbjct: 121 GAALAFTSSVIDIGGQTTRIDTGKEYYPYTTKKRSHIE 158

[Close]

BLAST of Carg01235 vs. TrEMBL
Match: tr|A0A2I4DN22|A0A2I4DN22_9ROSI (outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Juglans regia OX=51240 GN=LOC108981758 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 7.7e-71
Identity = 134/158 (84.81%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           +D +ERRYLE++D+ +MK +KG TTGF +GTIFGTIAATWYDVPRVERNVALPGL+RTLK
Sbjct: 3   IDPAERRYLEEEDSPLMKTMKGTTTGFAAGTIFGTIAATWYDVPRVERNVALPGLIRTLK 62

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYG+TFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGF AGA+VLG+KG+SI TAISA
Sbjct: 63  MMGNYGVTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFVAGATVLGFKGRSIKTAISA 122

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRSHIE 200
           GAALAVTSALID GGQTTRIDNGKEYYPYTTKKRS ++
Sbjct: 123 GAALAVTSALIDAGGQTTRIDNGKEYYPYTTKKRSTVD 160

[Close]

BLAST of Carg01235 vs. TrEMBL
Match: tr|M5VRA9|M5VRA9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G073800 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.2e-70
Identity = 133/155 (85.81%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           +D +ERRYLED+D+  MK IKGAT GFV+GTIFGTI ATWYDVPRVER+VALPGL+RTLK
Sbjct: 4   LDPAERRYLEDEDSPTMKTIKGATNGFVTGTIFGTIVATWYDVPRVERSVALPGLIRTLK 63

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYG+TFAAIGGVYIGVEQ+VQNYRMKRDF+NGAVGGF AG+++LGYKGKSISTAISA
Sbjct: 64  MMGNYGITFAAIGGVYIGVEQIVQNYRMKRDFINGAVGGFVAGSTILGYKGKSISTAISA 123

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRS 197
           GAALAVTS+LID GGQTTRIDNGKEYYPYTTKKRS
Sbjct: 124 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRS 158

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BLAST of Carg01235 vs. TrEMBL
Match: tr|A0A2H5MX13|A0A2H5MX13_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_281290 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.9e-69
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 42  MDASERRYLEDDDTSIMKMIKGATTGFVSGTIFGTIAATWYDVPRVERNVALPGLVRTLK 101
           MD SE RYLED+DT +MK IKGAT G VSGTIFGT+ ATW DVPRVER VALPGL+RTLK
Sbjct: 1   MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60

Query: 102 MMGNYGMTFAAIGGVYIGVEQLVQNYRMKRDFVNGAVGGFAAGASVLGYKGKSISTAISA 161
           MMGNYGMTFAAIGGVYIGVEQLVQ+YRMKRDFVNGAVGGF AGA+VLGYKGKSIS+AISA
Sbjct: 61  MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120

Query: 162 GAALAVTSALIDVGGQTTRIDNGKEYYPYTTKKRS 197
           GAALAVTS+LID GGQTTRIDNGKEYYPYTTKKRS
Sbjct: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRS 155

The following BLAST results are available for this feature:

BLAST of Carg01235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948275.1	2.5e-81	100.00	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita mo...	[more]
XP_022971491.1	3.6e-80	98.73	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita ma...	[more]
XP_022983139.1	6.1e-80	98.10	outer envelope pore protein 16-3, chloroplastic/mitochondrial-like [Cucurbita ma...	[more]
XP_022935378.1	2.3e-79	97.47	outer envelope pore protein 16-3, chloroplastic/mitochondrial [Cucurbita moschat...	[more]
XP_022154281.1	1.2e-78	96.20	outer envelope pore protein 16-3, chloroplastic/mitochondrial [Momordica charant...	[more]

BLAST of Carg01235 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42210.2	8.9e-65	74.68	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT3G57900.1	8.4e-07	34.38	unknown protein	[more]
AT2G28900.1	1.0e-04	38.27	outer plastid envelope protein 16-1	[more]

BLAST of Carg01235 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O48528\|OP163_ARATH	1.6e-63	74.68	Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis tha...	[more]

BLAST of Carg01235 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B800\|A0A1S3B800_CUCME	4.2e-77	93.67	outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Cucumis melo OX...	[more]
tr\|A0A0A0LBC6\|A0A0A0LBC6_CUCSA	3.0e-75	91.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809960 PE=4 SV=1	[more]
tr\|A0A2I4DN22\|A0A2I4DN22_9ROSI	7.7e-71	84.81	outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Juglans regia O...	[more]
tr\|M5VRA9\|M5VRA9_PRUPE	2.2e-70	85.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G073800 PE=4 SV=1	[more]
tr\|A0A2H5MX13\|A0A2H5MX13_CITUN	1.9e-69	87.74	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_281290 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042721	mitochondrial inner membrane protein insertion complex

Vocabulary: **Biological Process**
Term	Definition
GO:0045039	protein import into mitochondrial inner membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR039175	TIM22

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein import into mitochondrial inner membrane
cellular_component	GO:0042721	mitochondrial inner membrane protein insertion complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01235-RA	Carg01235-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 62..169 e-value: 1.6E-12 score: 47.5
None	No IPR available	PANTHER	PTHR14110:SF4	OUTER ENVELOPE PORE PROTEIN 16-3, CHLOROPLASTIC/MITOCHONDRIAL	coord: 30..199
IPR039175	Mitochondrial import inner membrane translocase subunit TIM22	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 30..199

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01235	Cla017524	Watermelon (97103) v1	carwmB0148
Carg01235	Csa3G809960	Cucumber (Chinese Long) v2	carcuB0172
Carg01235	MELO3C009644	Melon (DHL92) v3.5.1	carmeB0163
Carg01235	ClCG10G017380	Watermelon (Charleston Gray)	carwcgB0150
Carg01235	CSPI03G36650	Wild cucumber (PI 183967)	carcpiB0178
Carg01235	Cucsa.242840	Cucumber (Gy14) v1	carcgyB0195
Carg01235	CmoCh06G000800	Cucurbita moschata (Rifu)	carcmoB0227
Carg01235	Lsi03G017200	Bottle gourd (USVL1VR-Ls)	carlsiB143
Carg01235	Cp4.1LG08g13930	Cucurbita pepo (Zucchini)	carcpeB0234
Carg01235	Cp4.1LG03g03810	Cucurbita pepo (Zucchini)	carcpeB0229
Carg01235	CsGy3G034110	Cucumber (Gy14) v2	carcgybB0167
Carg01235	MELO3C009644.2	Melon (DHL92) v3.6.1	carmedB0164
Carg01235	CsaV3_3G039010	Cucumber (Chinese Long) v3	carcucB0178
Carg01235	Cla97C10G200240	Watermelon (97103) v2	carwmbB0162
Carg01235	Bhi11G002210	Wax gourd	carwgoB0197

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01235	Carg03557	Silver-seed gourd	carcarB182

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01235	Cucurbita maxima (Rimu)	carcmaB0202
Carg01235	Cucurbita maxima (Rimu)	carcmaB0216
Carg01235	Cucurbita moschata (Rifu)	carcmoB0213