Carg00902 (gene) Silver-seed gourd

NameCarg00902
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionArylphorin subunit beta
LocationCucurbita_argyrosperma_scaffold_014 : 2055222 .. 2056215 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCTTTTTTGAAAACGCCATGGAAATCTTCAACCCAAAAACTCGAAGCAGACTGCTTCTTCTGTTCTTCATTTTCATGCTTCACGTTGCTTCATGCTTTGCAGAACCCAATAAGGCTCCCGAGAGGCCCTCTTTTGGGAACTTCATTCAAGAAACTGTCGCTATTTTGAAGAAATCCCATCCCTCTCCATGGGACAAGGTTAAATGTCTCATTCACCAAATGCAGTTGCAGTTTTTCCCTCCTAATTTAGAGTAACTTTCTTCCCTTCATTCCTAACATGTTAATTTCGGCTATAGAGCGCTCAAATCCGCTATATATATATTCTACATGATCCTATATAGCTCTGATTGTGTGTTTCAGTTTTAGGAGTAGTGATGAAGCAAAGGGTGTGGTTGATGAAGTGAAAGAAGCAGTGGAGAAGAGCTTTGGAGCAAGCAAAGATGCAGTTTCGGAATCTGCTAGATCTGCAGCAAAAGTGATGGAGGAAGCAGTGGACAAGGTGAAAGAGAACCTGGTTGACAAGGAGAAGGACAAGGACAAGGACAAACATTCTCATGATGAGCTTTGAGCTTTGAGCTTTGATCATCCCTCTCTGTCGAAGGAGATCTTCCACTTTTCAACAACTTTCTATCTCTTCCTTTTCTTTTCGATCAGAAATTTGCATTCGAAGCTTTATGATTTAGATTGTGATAGAGATCTTAACCAGAAAACGATATGATAAATAGGCTTCTTGTGACAGAGAAGGATCATTTTGTGCCTTACTCTAGTCACTACCACAGCATGAATGGATGAAGTCCATTTGCTTTTCTATTTATCAATGAAATCTTTGAGGAATGTTCAGGAGAGTATCTATTAAGATATCTGATTCTATCTTCGTTTGAAGAAATGAAAGTCAATAAATGAAACAAATCCAATAATGAATGCAAGAAAGCAGTGGCTCAGAGGGAAAGTCACTATTAAAGAAGCAACACTGTATTATAACAAGAGGAAC

mRNA sequence

TTTTTCTTTTTTGAAAACGCCATGGAAATCTTCAACCCAAAAACTCGAAGCAGACTGCTTCTTCTGTTCTTCATTTTCATGCTTCACGTTGCTTCATGCTTTGCAGAACCCAATAAGGCTCCCGAGAGGCCCTCTTTTGGGAACTTCATTCAAGAAACTGTCGCTATTTTGAAGAAATCCCATCCCTCTCCATGGGACAAGGTTAAATGTCTCATTCACCAAATGCAGTTGCAGTTTTTCCCTCCTAATTTAGATTTTAGGAGTAGTGATGAAGCAAAGGGTGTGGTTGATGAAGTGAAAGAAGCAGTGGAGAAGAGCTTTGGAGCAAGCAAAGATGCAGTTTCGGAATCTGCTAGATCTGCAGCAAAAGTGATGGAGGAAGCAGTGGACAAGGTGAAAGAGAACCTGGTTGACAAGGAGAAGGACAAGGACAAGGACAAACATTCTCATGATGAGCTTTGAGCTTTGAGCTTTGATCATCCCTCTCTGTCGAAGGAGATCTTCCACTTTTCAACAACTTTCTATCTCTTCCTTTTCTTTTCGATCAGAAATTTGCATTCGAAGCTTTATGATTTAGATTGTGATAGAGATCTTAACCAGAAAACGATATGATAAATAGGCTTCTTGTGACAGAGAAGGATCATTTTGTGCCTTACTCTAGTCACTACCACAGCATGAATGGATGAAGTCCATTTGCTTTTCTATTTATCAATGAAATCTTTGAGGAATGTTCAGGAGAGTATCTATTAAGATATCTGATTCTATCTTCGTTTGAAGAAATGAAAGTCAATAAATGAAACAAATCCAATAATGAATGCAAGAAAGCAGTGGCTCAGAGGGAAAGTCACTATTAAAGAAGCAACACTGTATTATAACAAGAGGAAC

Coding sequence (CDS)

ATGGAAATCTTCAACCCAAAAACTCGAAGCAGACTGCTTCTTCTGTTCTTCATTTTCATGCTTCACGTTGCTTCATGCTTTGCAGAACCCAATAAGGCTCCCGAGAGGCCCTCTTTTGGGAACTTCATTCAAGAAACTGTCGCTATTTTGAAGAAATCCCATCCCTCTCCATGGGACAAGGTTAAATGTCTCATTCACCAAATGCAGTTGCAGTTTTTCCCTCCTAATTTAGATTTTAGGAGTAGTGATGAAGCAAAGGGTGTGGTTGATGAAGTGAAAGAAGCAGTGGAGAAGAGCTTTGGAGCAAGCAAAGATGCAGTTTCGGAATCTGCTAGATCTGCAGCAAAAGTGATGGAGGAAGCAGTGGACAAGGTGAAAGAGAACCTGGTTGACAAGGAGAAGGACAAGGACAAGGACAAACATTCTCATGATGAGCTTTGA

Protein sequence

MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDKVKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESARSAAKVMEEAVDKVKENLVDKEKDKDKDKHSHDEL
BLAST of Carg00902 vs. NCBI nr
Match: XP_022950287.1 (uncharacterized protein LOC111453420 [Cucurbita moschata])

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0

Query: 1   MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60
           MEIFNPKTRSRLLLLFFI MLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK
Sbjct: 1   MEIFNPKTRSRLLLLFFILMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60

Query: 61  VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESARSAAKVMEE 120
           VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESARSAAKVMEE
Sbjct: 61  VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESARSAAKVMEE 120

Query: 121 AVD 124
           AVD
Sbjct: 121 AVD 123

BLAST of Carg00902 vs. NCBI nr
Match: XP_023544688.1 (uncharacterized protein LOC111804199 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 8.0e-61
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0

Query: 1   MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60
           MEIFNPKTRSRLLLLFFI MLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK
Sbjct: 1   MEIFNPKTRSRLLLLFFILMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60

Query: 61  VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESARSAAKVMEE 120
           VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESA+SAAKVMEE
Sbjct: 61  VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSESAKSAAKVMEE 120

Query: 121 AVD 124
           AVD
Sbjct: 121 AVD 123

BLAST of Carg00902 vs. NCBI nr
Match: XP_022977956.1 (uncharacterized protein LOC111478091 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60
           MEIFNPKTRSRLLLLFF+ MLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK
Sbjct: 1   MEIFNPKTRSRLLLLFFVLMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60

Query: 61  VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSES 111
           VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSES
Sbjct: 61  VKCLIHQMQLQFFPPNLDFRSSDEAKGVVDEVKEAVEKSFGASKDAVSES 110

BLAST of Carg00902 vs. NCBI nr
Match: XP_011657792.1 (PREDICTED: uncharacterized protein LOC105435898 [Cucumis sativus] >KGN48428.1 hypothetical protein Csa_6G487000 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 0

Query: 1   MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60
           MEI N +TRS LLL+  I MLHVASCFA+ N APERPSF NFIQETVAILKKSH +P +K
Sbjct: 1   MEICNARTRSSLLLVLLILMLHVASCFADSNNAPERPSFWNFIQETVAILKKSHSTPLEK 60

Query: 61  VKCLIHQMQLQFFPPNLDFRSSDEAK-GVVDEVKEAVEKSFGA 103
           +K LIHQMQLQFFPPNLDFRSSDE K GVVDE+KEAVEKSFGA
Sbjct: 61  IKSLIHQMQLQFFPPNLDFRSSDETKGGVVDEMKEAVEKSFGA 103

BLAST of Carg00902 vs. NCBI nr
Match: XP_008440136.1 (PREDICTED: uncharacterized protein LOC103484692 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 8.9e-36
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 0

Query: 1   MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60
           MEI++ +T SRLLL+  I MLHVASCFA+ NKAPERPSF NFIQETVAILKKSH +P DK
Sbjct: 1   MEIYDARTGSRLLLVLLILMLHVASCFADSNKAPERPSFWNFIQETVAILKKSHSTPLDK 60

Query: 61  VKCLIHQMQLQFFPPNLDFRSSDEAK-GVVDEVKEAVEKSF 101
           ++ +IHQMQ QFFPPNLDFRSSDE K GVVDEVKEAVEKSF
Sbjct: 61  IRSIIHQMQFQFFPPNLDFRSSDETKGGVVDEVKEAVEKSF 101

BLAST of Carg00902 vs. TAIR10
Match: AT1G16850.1 (unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 0

Query: 14  LLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDKVKCLIHQMQLQFF 73
           + FF+F+L V +  A+ +     PS        +  +K+S  + W KV+  + + Q  FF
Sbjct: 19  IFFFLFVLSV-NVSADVDSERAVPSEDKTTTVWLTKIKRSGKNYWAKVRETLDRGQSHFF 78

Query: 74  PPNLDFRSSDEA-KGVVDEVKEAVEKSFGASKDAVSESARSAAKVMEEAVD 124
           PPN  F   ++A  G  + +KEA  +SF  SK  V E+ARSAA+V+ +  +
Sbjct: 79  PPNTYFTGKNDAPMGAGENMKEAATRSFEHSKATVEEAARSAAEVVSDTAE 128

BLAST of Carg00902 vs. TAIR10
Match: AT5G64820.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 24/91 (26.37%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 15  LFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAIL-KKSHPSPWDKVKCLIHQMQLQFF 74
           +  I +  V++  AE + A ++    + ++    I   K  PS W+ ++  + ++Q++ +
Sbjct: 16  IIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELIQGAMQKIQMKLY 75

Query: 75  PPNLDFRSSDEAKGVVDE-----VKEAVEKS 100
           PPNLDFRS+ +   + +E     V+EA  +S
Sbjct: 76  PPNLDFRSNSDKSNIEEEDKAEKVREAATRS 106

BLAST of Carg00902 vs. TrEMBL
Match: tr|A0A0A0KFX9|A0A0A0KFX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487000 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.1e-37
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 0

Query: 1   MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60
           MEI N +TRS LLL+  I MLHVASCFA+ N APERPSF NFIQETVAILKKSH +P +K
Sbjct: 1   MEICNARTRSSLLLVLLILMLHVASCFADSNNAPERPSFWNFIQETVAILKKSHSTPLEK 60

Query: 61  VKCLIHQMQLQFFPPNLDFRSSDEAK-GVVDEVKEAVEKSFGA 103
           +K LIHQMQLQFFPPNLDFRSSDE K GVVDE+KEAVEKSFGA
Sbjct: 61  IKSLIHQMQLQFFPPNLDFRSSDETKGGVVDEMKEAVEKSFGA 103

BLAST of Carg00902 vs. TrEMBL
Match: tr|A0A1S3B154|A0A1S3B154_CUCME (uncharacterized protein LOC103484692 OS=Cucumis melo OX=3656 GN=LOC103484692 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.9e-36
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 0

Query: 1   MEIFNPKTRSRLLLLFFIFMLHVASCFAEPNKAPERPSFGNFIQETVAILKKSHPSPWDK 60
           MEI++ +T SRLLL+  I MLHVASCFA+ NKAPERPSF NFIQETVAILKKSH +P DK
Sbjct: 1   MEIYDARTGSRLLLVLLILMLHVASCFADSNKAPERPSFWNFIQETVAILKKSHSTPLDK 60

Query: 61  VKCLIHQMQLQFFPPNLDFRSSDEAK-GVVDEVKEAVEKSF 101
           ++ +IHQMQ QFFPPNLDFRSSDE K GVVDEVKEAVEKSF
Sbjct: 61  IRSIIHQMQFQFFPPNLDFRSSDETKGGVVDEVKEAVEKSF 101

BLAST of Carg00902 vs. TrEMBL
Match: tr|A0A1Q3AR75|A0A1Q3AR75_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_01608 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 48/90 (53.33%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 36  RPSFGNFIQETVAILKKSHPSPWDKVKCLIHQMQLQFFPPNLDFRSSDEAK---GVVDEV 95
           +PSF   + +T+ +LKKSH S WDKVK +IH+MQ QFFPPN+DFRS++EA    G   ++
Sbjct: 30  KPSFAEIVTDTIKLLKKSHKSSWDKVKTIIHEMQ-QFFPPNIDFRSAEEAHAGVGAGGKM 89

Query: 96  KEAVEKSFGASKDAVSESARSAAKVMEEAV 123
           K AVEKSFG S++A+  SA++AAK + +A+
Sbjct: 90  KAAVEKSFGKSEEALEASAKTAAKAVADAM 118

BLAST of Carg00902 vs. TrEMBL
Match: tr|B9T5U8|B9T5U8_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0425550 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.8e-16
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 35  ERPSFGNFIQETVAILKKSHPSPWDKVKCLIHQMQLQFFPPNLDFRSSD-EAKGVVDEVK 94
           E+P     + +T+  LKKSH S WDK+K +IH  QLQFFPPNLDFR  D E  G    +K
Sbjct: 41  EKPPLVKMVMDTLTTLKKSHKSSWDKLKAMIHGFQLQFFPPNLDFRGQDQEVDGAGGRMK 100

Query: 95  EAVEKSFGASKDAVSESARSAAKVMEEAV 123
           EA EKS    K    ESA+SAAKV+ EAV
Sbjct: 101 EAAEKSLEVGKVTAEESAKSAAKVVGEAV 129

BLAST of Carg00902 vs. TrEMBL
Match: tr|A0A2I4DUD1|A0A2I4DUD1_9ROSI (uncharacterized protein LOC108983545 OS=Juglans regia OX=51240 GN=LOC108983545 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-13
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 35  ERPSFGNFIQETVAILKKSHPSPWDKVKCLIHQMQLQFFPPNLDFRSSDEA--------- 94
           E+PSF   + +T++ILK+SH   W KVK +I +++ Q FPPNLDFR++D+A         
Sbjct: 41  EKPSFAKMVTDTISILKQSHQRSWSKVKTIIKELEFQIFPPNLDFRAADDANSKDRVGGI 100

Query: 95  KGVVDEVKEAVEKSFGASKDAVSESARSAAKVM 119
                +VK+A +KSF  SK+ V E+A+SA++V+
Sbjct: 101 NSASGKVKDAAQKSFRTSKNTVEETAKSASEVV 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022950287.13.6e-6199.19uncharacterized protein LOC111453420 [Cucurbita moschata][more]
XP_023544688.18.0e-6198.37uncharacterized protein LOC111804199 [Cucurbita pepo subsp. pepo][more]
XP_022977956.11.5e-5498.18uncharacterized protein LOC111478091 [Cucurbita maxima][more]
XP_011657792.11.4e-3679.61PREDICTED: uncharacterized protein LOC105435898 [Cucumis sativus] >KGN48428.1 hy... [more]
XP_008440136.18.9e-3678.22PREDICTED: uncharacterized protein LOC103484692 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G16850.11.9e-0833.33unknown protein[more]
AT5G64820.11.7e-0426.37unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KFX9|A0A0A0KFX9_CUCSA9.1e-3779.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487000 PE=4 SV=1[more]
tr|A0A1S3B154|A0A1S3B154_CUCME5.9e-3678.22uncharacterized protein LOC103484692 OS=Cucumis melo OX=3656 GN=LOC103484692 PE=... [more]
tr|A0A1Q3AR75|A0A1Q3AR75_CEPFO3.6e-1753.33Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3... [more]
tr|B9T5U8|B9T5U8_RICCO6.8e-1653.93Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0425550 PE=4 SV=1[more]
tr|A0A2I4DUD1|A0A2I4DUD1_9ROSI2.4e-1343.01uncharacterized protein LOC108983545 OS=Juglans regia OX=51240 GN=LOC108983545 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00902-RACarg00902-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 108..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..146
NoneNo IPR availablePANTHERPTHR35463:SF1SUBFAMILY NOT NAMEDcoord: 19..139
NoneNo IPR availablePANTHERPTHR35463FAMILY NOT NAMEDcoord: 19..139