Carg00871 (gene) Silver-seed gourd

Overview
NameCarg00871
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionnuclear ribonuclease Z
LocationCucurbita_argyrosperma_scaffold_014 : 1897376 .. 1898637 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATACATTTACCATTGTTAGAAAAAGAAAATAAAAGGCGAAGGGAATGTGGAACCCGAACGAAGAGAAGTTCAAAATATTGAAGCAGCAGAGTTTACCAGTCTCCGTCGTTTCTCTGCTCATAAATTTCATCCATGGAAGCCGGAACCGGAAGTAGCAGCAAAAGCCTTGACTCAGACCTGAAGGAAAGGACGAAGGGTATGCAAATTGAAGGATACCCAATTAAGGGTTTGTCCATTGGAGGCCATGAAACTTGCATCATTTTCCCAACCCTCAATTTGGCCTTTGATATTGGTCGCTGCCCACAAAAGGCTATAAGCCAGAACTTCCTCCTCATCTCCCATGGTCATATGGATCACATTGTAAGTCCAACTCCCTCTCACCGCTTCATTTTTCAACTTTCTCATTGTCGTCTGAGCTTGTTCCCATGGCGTGAGACCTCACGGTCACTACGCTTAGTAGATGCAATAACTTGTGCAGAAATATCGAAGTGAAATTACATGTGGTTTAGGGCTTGAAGTCTAGTCATTACCTGTGGTTCTGCTGCAGCTATCTTCAATTCAAGTATCTATTTAAGATTTGAATCTAATATTACCTTCCCGACGTTGTTGGGAACATCTTATAAAATTCAAATCAAACATCGATCGCATTTCGAATGTAAGCTTTTTCGCGTATTGTTCATCTGCAGTTTACCTGTAGCTTTTGTGCTTAATAGGGGGGACTTCCTTTATACGTAGCTACGCGTGGATTATACAAAATGGAGCCTCCTACAATCATTGTACCAAAATCTATAAAGAATGATGTAGAAAATCTCTTAGAGGTGCACAGAAGATTGGATCAGTCTGAGCTGAGATGTAATTTGATAGGCTTGGAAGTGGGTAGTGCCCCTTATTGAATCTTCTTATTTTGTCCAATGAATAATTTGGTCACTTTTTGCCCAATTTTCGTGTTGCAGTGTAATACATTCTTCCATTCATATATATTGTTTGCAGGAGAAGAGTTTTCATTGAGAAGAGACCTCAAAGTGAGGGCTTTTAAGACATACCATGTCATTGACAGCCAGGTAACCTATTTAATGCACATTTACTATGATGATTTGGTTTTTTTTTGTGTCCAAAATTTACAGCCAACTCCTACACAATAACTTTGGCAGGGCTATTTACTTTACTCTGTAAAACAGAAGCTTAAGAAAGAGTACTTGGGACTACCTGGCAACGAGATCAAGAAACTCCGGTTATCTGGTGTGGAGGTCTGTCCTTGA

mRNA sequence

AAAATACATTTACCATTGTTAGAAAAAGAAAATAAAAGGCGAAGGGAATGTGGAACCCGAACGAAGAGAAGTTCAAAATATTGAAGCAGCAGAGTTTACCAGTCTCCGTCGTTTCTCTGCTCATAAATTTCATCCATGGAAGCCGGAACCGGAAGTAGCAGCAAAAGCCTTGACTCAGACCTGAAGGAAAGGACGAAGGGTATGCAAATTGAAGGATACCCAATTAAGGGTTTGTCCATTGGAGGCCATGAAACTTGCATCATTTTCCCAACCCTCAATTTGGCCTTTGATATTGGTCGCTGCCCACAAAAGGCTATAAGCCAGAACTTCCTCCTCATCTCCCATGGTCATATGGATCACATTGGGGGACTTCCTTTATACGTAGCTACGCGTGGATTATACAAAATGGAGCCTCCTACAATCATTGTACCAAAATCTATAAAGAATGATGTAGAAAATCTCTTAGAGGTGCACAGAAGATTGGATCAGTCTGAGCTGAGATGTAATTTGATAGGCTTGGAAGTGGGAGAAGAGTTTTCATTGAGAAGAGACCTCAAAGTGAGGGCTTTTAAGACATACCATGTCATTGACAGCCAGGGCTATTTACTTTACTCTGTAAAACAGAAGCTTAAGAAAGAGTACTTGGGACTACCTGGCAACGAGATCAAGAAACTCCGGTTATCTGGTGTGGAGGTCTGTCCTTGA

Coding sequence (CDS)

ATGGAAGCCGGAACCGGAAGTAGCAGCAAAAGCCTTGACTCAGACCTGAAGGAAAGGACGAAGGGTATGCAAATTGAAGGATACCCAATTAAGGGTTTGTCCATTGGAGGCCATGAAACTTGCATCATTTTCCCAACCCTCAATTTGGCCTTTGATATTGGTCGCTGCCCACAAAAGGCTATAAGCCAGAACTTCCTCCTCATCTCCCATGGTCATATGGATCACATTGGGGGACTTCCTTTATACGTAGCTACGCGTGGATTATACAAAATGGAGCCTCCTACAATCATTGTACCAAAATCTATAAAGAATGATGTAGAAAATCTCTTAGAGGTGCACAGAAGATTGGATCAGTCTGAGCTGAGATGTAATTTGATAGGCTTGGAAGTGGGAGAAGAGTTTTCATTGAGAAGAGACCTCAAAGTGAGGGCTTTTAAGACATACCATGTCATTGACAGCCAGGGCTATTTACTTTACTCTGTAAAACAGAAGCTTAAGAAAGAGTACTTGGGACTACCTGGCAACGAGATCAAGAAACTCCGGTTATCTGGTGTGGAGGTCTGTCCTTGA

Protein sequence

MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVEVCP
Homology
[Close]
BLAST of Carg00871 vs. NCBI nr
Match: XP_022950835.1 (tRNase Z TRZ1 [Cucurbita moschata])

HSP 1 Score: 379.0 bits (972), Expect = 9.3e-102
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60
           MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA
Sbjct: 1   MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60

Query: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 120
           ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE
Sbjct: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 120

Query: 121 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 180
           LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL
Sbjct: 121 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 180

Query: 181 RLSGVEV 188
           RLSGVEV
Sbjct: 181 RLSGVEV 187

[Close]
BLAST of Carg00871 vs. NCBI nr
Match: XP_022979026.1 (tRNase Z TRZ1 [Cucurbita maxima])

HSP 1 Score: 376.7 bits (966), Expect = 4.6e-101
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60
           MEAGTGSSSKSLDSDLKER KGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA
Sbjct: 1   MEAGTGSSSKSLDSDLKERMKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60

Query: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 120
           ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE
Sbjct: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 120

Query: 121 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 180
           LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL
Sbjct: 121 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 180

Query: 181 RLSGVEV 188
           RLSGVEV
Sbjct: 181 RLSGVEV 187

[Close]
BLAST of Carg00871 vs. NCBI nr
Match: XP_023543256.1 (tRNase Z TRZ1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.1 bits (954), Expect = 1.1e-99
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0 

Query: 1   MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60
           MEAGTGSS KSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA
Sbjct: 1   MEAGTGSSRKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60

Query: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 120
           ISQNFLLISHGHMDHIGGLPLYVATRGLYKM PPTIIVPKSIKNDVENLLEVHRRLDQSE
Sbjct: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMAPPTIIVPKSIKNDVENLLEVHRRLDQSE 120

Query: 121 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 180
           LRCNLIGLEVGEEFSL+RDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEY GLPGNEIKKL
Sbjct: 121 LRCNLIGLEVGEEFSLKRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYFGLPGNEIKKL 180

Query: 181 RLSGVEV 188
           RLSGVEV
Sbjct: 181 RLSGVEV 187

[Close]
BLAST of Carg00871 vs. NCBI nr
Match: XP_023543257.1 (nuclear ribonuclease Z isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.1 bits (954), Expect = 1.1e-99
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0 

Query: 1   MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60
           MEAGTGSS KSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA
Sbjct: 1   MEAGTGSSRKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60

Query: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 120
           ISQNFLLISHGHMDHIGGLPLYVATRGLYKM PPTIIVPKSIKNDVENLLEVHRRLDQSE
Sbjct: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMAPPTIIVPKSIKNDVENLLEVHRRLDQSE 120

Query: 121 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 180
           LRCNLIGLEVGEEFSL+RDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEY GLPGNEIKKL
Sbjct: 121 LRCNLIGLEVGEEFSLKRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYFGLPGNEIKKL 180

Query: 181 RLSGVEV 188
           RLSGVEV
Sbjct: 181 RLSGVEV 187

[Close]
BLAST of Carg00871 vs. NCBI nr
Match: XP_022133332.1 (tRNase Z TRZ1 [Momordica charantia])

HSP 1 Score: 343.2 bits (879), Expect = 5.6e-91
Identity = 168/187 (89.84%), Postives = 172/187 (91.98%), Query Frame = 0 

Query: 1   MEAGTGSSSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 60
           ME GTGSSSKS DSD  E  KGMQIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKA
Sbjct: 1   METGTGSSSKSSDSDPMEAKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKA 60

Query: 61  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 120
           I QNFL ISHGHMDHIGGLPLYVATRGLY MEPPTII+PKSIK DVENLLEVHRRLD SE
Sbjct: 61  IGQNFLFISHGHMDHIGGLPLYVATRGLYNMEPPTIILPKSIKTDVENLLEVHRRLDHSE 120

Query: 121 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 180
           LRCNLIGL+VGEE SLRRDLK RAFKTYHVI SQGYL+YSVKQKLKKEYLGL GNEIKKL
Sbjct: 121 LRCNLIGLDVGEELSLRRDLKARAFKTYHVIQSQGYLVYSVKQKLKKEYLGLSGNEIKKL 180

Query: 181 RLSGVEV 188
           RLSGVEV
Sbjct: 181 RLSGVEV 187

[Close]
BLAST of Carg00871 vs. TAIR10
Match: AT1G74700.1 (tRNAse Z1)

HSP 1 Score: 280.4 bits (716), Expect = 8.1e-76
Identity = 128/170 (75.29%), Postives = 152/170 (89.41%), Query Frame = 0 

Query: 18  ERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQNFLLISHGHMDHIG 77
           E+ K MQIEGYPI+GLSIGGHETCIIFP+L +AFDIGRCP +AISQ+FL ISH HMDHIG
Sbjct: 2   EKKKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIG 61

Query: 78  GLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLR 137
           GLP+YVATRGLYKM+PPTIIVP SIK  VE+L EVHR+LD SEL+ NL+GL++GEEF +R
Sbjct: 62  GLPMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIR 121

Query: 138 RDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVEV 188
           +DLKV+AFKT+HVI SQGY++YS K KLKKEY+GL GNEIK L++SGVE+
Sbjct: 122 KDLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEI 171

[Close]
BLAST of Carg00871 vs. TAIR10
Match: AT2G04530.1 (Metallo-hydrolase/oxidoreductase superfamily protein)

HSP 1 Score: 224.9 bits (572), Expect = 4.1e-59
Identity = 100/167 (59.88%), Postives = 129/167 (77.25%), Query Frame = 0 

Query: 21  KGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQNFLLISHGHMDHIGGLP 80
           KG+++E Y I+G+S+GGHETC+I P L   FDIGRCP +AI Q FL I+H H+DHIGGLP
Sbjct: 74  KGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQKFLFITHAHLDHIGGLP 133

Query: 81  LYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLRRDL 140
           +YVA+RGLY +EPP I VP SIK DVE LLE+HR + Q EL   LI L VGE + LR D+
Sbjct: 134 MYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLAVGETYELRNDI 193

Query: 141 KVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVEV 188
            VR F T+HVI SQGY++YSV++KL+K+Y  L G +I+K++ SGVE+
Sbjct: 194 VVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEI 240

[Close]
BLAST of Carg00871 vs. Swiss-Prot
Match: sp|Q8LGU7|RNZ1_ARATH (tRNase Z TRZ1 OS=Arabidopsis thaliana OX=3702 GN=TRZ1 PE=1 SV=3)

HSP 1 Score: 280.4 bits (716), Expect = 1.5e-74
Identity = 128/170 (75.29%), Postives = 152/170 (89.41%), Query Frame = 0 

Query: 18  ERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQNFLLISHGHMDHIG 77
           E+ K MQIEGYPI+GLSIGGHETCIIFP+L +AFDIGRCP +AISQ+FL ISH HMDHIG
Sbjct: 2   EKKKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIG 61

Query: 78  GLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLR 137
           GLP+YVATRGLYKM+PPTIIVP SIK  VE+L EVHR+LD SEL+ NL+GL++GEEF +R
Sbjct: 62  GLPMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIR 121

Query: 138 RDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVEV 188
           +DLKV+AFKT+HVI SQGY++YS K KLKKEY+GL GNEIK L++SGVE+
Sbjct: 122 KDLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEI 171

[Close]
BLAST of Carg00871 vs. Swiss-Prot
Match: sp|P60193|RNZN_WHEAT (Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum OX=4565 GN=ELAC PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 117/165 (70.91%), Postives = 148/165 (89.70%), Query Frame = 0 

Query: 23  MQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQNFLLISHGHMDHIGGLPLY 82
           ++IEGYP++G+SIGGHETC+IFPTL+LAFDIGRCPQ+A++Q+FL ISH H+DHIGGLP+Y
Sbjct: 7   LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMY 66

Query: 83  VATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLRRDLKV 142
           VATRGLY++ PPTI VPK ++  VE L +VHR +DQSEL   L+ L++GEE+ LRRDLKV
Sbjct: 67  VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKV 126

Query: 143 RAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVEV 188
           RAFKTYH I SQGY++YSVKQKLK++YLGLPG+EIK+L+LSGVE+
Sbjct: 127 RAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVEI 171

[Close]
BLAST of Carg00871 vs. Swiss-Prot
Match: sp|Q8L633|RNZ2_ARATH (tRNase Z TRZ2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TRZ2 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.3e-58
Identity = 100/167 (59.88%), Postives = 129/167 (77.25%), Query Frame = 0 

Query: 21  KGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQNFLLISHGHMDHIGGLP 80
           KG+++E Y I+G+S+GGHETC+I P L   FDIGRCP +AI Q FL I+H H+DHIGGLP
Sbjct: 74  KGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQKFLFITHAHLDHIGGLP 133

Query: 81  LYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLRRDL 140
           +YVA+RGLY +EPP I VP SIK DVE LLE+HR + Q EL   LI L VGE + LR D+
Sbjct: 134 MYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLAVGETYELRNDI 193

Query: 141 KVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVEV 188
            VR F T+HVI SQGY++YSV++KL+K+Y  L G +I+K++ SGVE+
Sbjct: 194 VVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEI 240

[Close]
BLAST of Carg00871 vs. Swiss-Prot
Match: sp|B9LQT0|RNZ_HALLT (Ribonuclease Z OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) OX=416348 GN=rnz PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-06
Identity = 43/138 (31.16%), Postives = 64/138 (46.38%), Query Frame = 0 

Query: 49  LAFDIGRCPQKAISQ-------NFLLISHGHMDHIGGLPLYVATRGLY-KMEPPTIIVPK 108
           L FD G   Q+ + +       + L +SH H DH+ G+P  V T G   + EP TI  P 
Sbjct: 33  LLFDCGEGTQRGMMRFGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPP 92

Query: 109 SIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYS 168
             ++D+ +L  VH        +  +  +  GE        +VRAF+T H   SQGY+L  
Sbjct: 93  GTEDDLHDL--VHAVGHDPAFQIRIESVAPGEVALDADGYEVRAFETVHRTKSQGYVLEE 152

Query: 169 VKQ-----KLKKEYLGLP 174
             +     + K E LG+P
Sbjct: 153 DDRPGRFDRPKAEELGVP 168

[Close]
BLAST of Carg00871 vs. Swiss-Prot
Match: sp|Q973F1|RNZ_SULTO (Ribonuclease Z OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=rnz PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 35/120 (29.17%), Postives = 63/120 (52.50%), Query Frame = 0 

Query: 68  ISHGHMDHIGGLPLYVATRGLYKMEPPTIIV-PKSIKNDVENLLEVHRRLDQSELRCNLI 127
           I+H H DH+ GLP  + T G+Y  +   +++ PK +K  +E++ +        E++    
Sbjct: 58  ITHMHGDHVLGLPGMIETMGMYSRKESLLLMGPKELKEFLEDIFKKTYFYPNFEIQI--- 117

Query: 128 GLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVE 187
            ++  E+     ++K+  F+T H I+SQGY L+  K +LK         +I KLR  G++
Sbjct: 118 -IDKYED----ENIKISTFETCHTIESQGY-LFEEKDRLK--------IDIDKLRKEGIK 160

[Close]
BLAST of Carg00871 vs. TrEMBL
Match: tr|A0A0A0L1I3|A0A0A0L1I3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G228360 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.4e-90
Identity = 169/188 (89.89%), Postives = 177/188 (94.15%), Query Frame = 0 

Query: 1   MEAGTGS-SSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQK 60
           M AGT S SSK+LDS+  E +KG+QIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQK
Sbjct: 1   MAAGTASFSSKNLDSNPMEMSKGIQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQK 60

Query: 61  AISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQS 120
           AISQ+FL ISHGHMDHIGGLPLYVATRGLYKM PPTIIVPKSIKNDVENLLEVHRRLDQS
Sbjct: 61  AISQDFLFISHGHMDHIGGLPLYVATRGLYKMGPPTIIVPKSIKNDVENLLEVHRRLDQS 120

Query: 121 ELRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKK 180
           ELRCNLIGLEVGEE SLRRDLKVR F+TYHVIDSQGYLLYSVKQKLKK+YLGL GNEIKK
Sbjct: 121 ELRCNLIGLEVGEELSLRRDLKVRVFRTYHVIDSQGYLLYSVKQKLKKDYLGLSGNEIKK 180

Query: 181 LRLSGVEV 188
           LRLSGVE+
Sbjct: 181 LRLSGVEI 188

[Close]
BLAST of Carg00871 vs. TrEMBL
Match: tr|A0A1S3C5G3|A0A1S3C5G3_CUCME (nuclear ribonuclease Z OS=Cucumis melo OX=3656 GN=LOC103497261 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 2.7e-89
Identity = 165/188 (87.77%), Postives = 176/188 (93.62%), Query Frame = 0 

Query: 1   MEAGTGS-SSKSLDSDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQK 60
           M AGT + SSK+LDS+  E +KG+QI GYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQK
Sbjct: 1   MAAGTANFSSKNLDSNPMEMSKGIQIAGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQK 60

Query: 61  AISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQS 120
           AISQ+FL ISHGHMDHIGGLPLYVATRGLYKM PPTI+VPKSIKNDVENLLEVHRRLDQS
Sbjct: 61  AISQDFLFISHGHMDHIGGLPLYVATRGLYKMRPPTIVVPKSIKNDVENLLEVHRRLDQS 120

Query: 121 ELRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKK 180
           ELRCNLIGLEVGEE SLRRDLKVR F+TYHVIDSQGYLLYSVKQKLKK+YLGL GNEIKK
Sbjct: 121 ELRCNLIGLEVGEELSLRRDLKVRVFRTYHVIDSQGYLLYSVKQKLKKDYLGLSGNEIKK 180

Query: 181 LRLSGVEV 188
           LRLSGVE+
Sbjct: 181 LRLSGVEI 188

[Close]
BLAST of Carg00871 vs. TrEMBL
Match: tr|A0A1U8NPV1|A0A1U8NPV1_GOSHI (nuclear ribonuclease Z-like OS=Gossypium hirsutum OX=3635 GN=LOC107949840 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 138/187 (73.80%), Postives = 162/187 (86.63%), Query Frame = 0 

Query: 6   GSSSKSLD-----SDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 65
           G+ SKS +     +D K+  KG++IEGY ++GLSIGGHETCIIFPTLNLAFDIGRCPQ+A
Sbjct: 5   GAKSKSPEPGNQGNDEKKSKKGLEIEGYRVEGLSIGGHETCIIFPTLNLAFDIGRCPQRA 64

Query: 66  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 125
           +SQ+FL ISHGHMDHIGGLP+YVATRGLY M+PPTI+VP  IK DVE L EVHR++DQSE
Sbjct: 65  LSQDFLFISHGHMDHIGGLPMYVATRGLYGMKPPTIVVPTCIKEDVEKLFEVHRKMDQSE 124

Query: 126 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 185
           L+ NLIGL+VGEEF LRRDLKVRAF+TYHVI SQGY++YSVKQKLK EY+GL GNEIK L
Sbjct: 125 LKHNLIGLDVGEEFFLRRDLKVRAFRTYHVIPSQGYVVYSVKQKLKDEYMGLSGNEIKNL 184

Query: 186 RLSGVEV 188
           + SGVE+
Sbjct: 185 KSSGVEI 191

[Close]
BLAST of Carg00871 vs. TrEMBL
Match: tr|A0A0D2QHT5|A0A0D2QHT5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G094900 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 138/187 (73.80%), Postives = 162/187 (86.63%), Query Frame = 0 

Query: 6   GSSSKSLD-----SDLKERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKA 65
           G+ SKS +     +D K+  KG++IEGY ++GLSIGGHETCIIFPTLNLAFDIGRCPQ+A
Sbjct: 5   GAKSKSPEPGNQGNDEKKSKKGLEIEGYRVEGLSIGGHETCIIFPTLNLAFDIGRCPQRA 64

Query: 66  ISQNFLLISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSE 125
           +SQ+FL ISHGHMDHIGGLP+YVATRGLY M+PPTI+VP  IK DVE L EVHR++DQSE
Sbjct: 65  LSQDFLFISHGHMDHIGGLPMYVATRGLYGMKPPTIVVPTCIKEDVEKLFEVHRKMDQSE 124

Query: 126 LRCNLIGLEVGEEFSLRRDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKL 185
           L+ NLIGL+VGEEF LRRDLKVRAF+TYHVI SQGY++YSVKQKLK EY+GL GNEIK L
Sbjct: 125 LKHNLIGLDVGEEFFLRRDLKVRAFRTYHVIPSQGYVVYSVKQKLKDEYMGLSGNEIKNL 184

Query: 186 RLSGVEV 188
           + SGVE+
Sbjct: 185 KSSGVEI 191

[Close]
BLAST of Carg00871 vs. TrEMBL
Match: tr|A0A1J3FJH5|A0A1J3FJH5_NOCCA (Nuclear ribonuclease Z OS=Noccaea caerulescens OX=107243 GN=GA_TR15400_c0_g1_i1_g.47129 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.4e-74
Identity = 131/170 (77.06%), Postives = 154/170 (90.59%), Query Frame = 0 

Query: 18  ERTKGMQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQNFLLISHGHMDHIG 77
           E+ KGM+IEGYPI GLSIGGHETCIIFP+L LAFDIGRCP +A+SQ+FL ISH HMDHIG
Sbjct: 2   EKKKGMEIEGYPIDGLSIGGHETCIIFPSLRLAFDIGRCPHRAVSQDFLFISHSHMDHIG 61

Query: 78  GLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEEFSLR 137
           GLP+YVATRGLYKM+PPTIIVPKSIK  VE+L EVHR+LD SEL+ NL+GL++GEEF +R
Sbjct: 62  GLPMYVATRGLYKMKPPTIIVPKSIKECVESLFEVHRKLDSSELKHNLVGLDIGEEFIIR 121

Query: 138 RDLKVRAFKTYHVIDSQGYLLYSVKQKLKKEYLGLPGNEIKKLRLSGVEV 188
           +DLKV+AFKTYHVI SQGY++YS KQKLK+EY+GLPGNEIK L+ SGVE+
Sbjct: 122 KDLKVKAFKTYHVIQSQGYVVYSTKQKLKEEYIGLPGNEIKNLKASGVEI 171

The following BLAST results are available for this feature:
BLAST of Carg00871 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950835.19.3e-102100.00tRNase Z TRZ1 [Cucurbita moschata][more]
XP_022979026.14.6e-10199.47tRNase Z TRZ1 [Cucurbita maxima][more]
XP_023543256.11.1e-9997.86tRNase Z TRZ1 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023543257.11.1e-9997.86nuclear ribonuclease Z isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022133332.15.6e-9189.84tRNase Z TRZ1 [Momordica charantia][more]
BLAST of Carg00871 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74700.18.1e-7675.29tRNAse Z1[more]
AT2G04530.14.1e-5959.88Metallo-hydrolase/oxidoreductase superfamily protein[more]
BLAST of Carg00871 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LGU7|RNZ1_ARATH1.5e-7475.29tRNase Z TRZ1 OS=Arabidopsis thaliana OX=3702 GN=TRZ1 PE=1 SV=3[more]
sp|P60193|RNZN_WHEAT1.3e-7070.91Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum OX=4565 GN=ELAC PE=1 SV=1[more]
sp|Q8L633|RNZ2_ARATH7.3e-5859.88tRNase Z TRZ2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TRZ2 PE=2 SV=1[more]
sp|B9LQT0|RNZ_HALLT2.9e-0631.16Ribonuclease Z OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8... [more]
sp|Q973F1|RNZ_SULTO1.9e-0529.17Ribonuclease Z OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 10014... [more]
BLAST of Carg00871 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1I3|A0A0A0L1I3_CUCSA2.4e-9089.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G228360 PE=4 SV=1[more]
tr|A0A1S3C5G3|A0A1S3C5G3_CUCME2.7e-8987.77nuclear ribonuclease Z OS=Cucumis melo OX=3656 GN=LOC103497261 PE=4 SV=1[more]
tr|A0A1U8NPV1|A0A1U8NPV1_GOSHI1.1e-7473.80nuclear ribonuclease Z-like OS=Gossypium hirsutum OX=3635 GN=LOC107949840 PE=4 S... [more]
tr|A0A0D2QHT5|A0A0D2QHT5_GOSRA1.1e-7473.80Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G094900 PE=4 ... [more]
tr|A0A1J3FJH5|A0A1J3FJH5_NOCCA2.4e-7477.06Nuclear ribonuclease Z OS=Noccaea caerulescens OX=107243 GN=GA_TR15400_c0_g1_i1_... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036866RibonucZ/Hydroxyglut_hydro
IPR001279Metallo-B-lactamas
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00871-RACarg00871-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001279Metallo-beta-lactamasePFAMPF12706Lactamase_B_2coord: 65..149
e-value: 7.0E-7
score: 28.9
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeGENE3DG3DSA:3.60.15.10coord: 29..188
e-value: 1.2E-25
score: 92.4
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeSUPERFAMILYSSF56281Metallo-hydrolase/oxidoreductasecoord: 42..186
NoneNo IPR availablePANTHERPTHR12553:SF43NUCLEAR RIBONUCLEASE Zcoord: 14..179
NoneNo IPR availablePANTHERPTHR12553RIBONUCLEASE Zcoord: 14..179
NoneNo IPR availableCDDcd16272RNaseZ_MBL-foldcoord: 33..156
e-value: 2.4801E-25
score: 96.5634

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00871Cla001803Watermelon (97103) v1carwmB0407
Carg00871ClCG01G016500Watermelon (Charleston Gray)carwcgB0397
Carg00871CmaCh03G010150Cucurbita maxima (Rimu)carcmaB0567
Carg00871CmoCh03G010180Cucurbita moschata (Rifu)carcmoB0551
Carg00871Lsi01G010240Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00871Cla97C01G015460Watermelon (97103) v2carwmbB0426
Carg00871Bhi03G001493Wax gourdcarwgoB0489
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg00871Silver-seed gourdcarcarB218
Carg00871Silver-seed gourdcarcarB428
Carg00871Cucumber (Gy14) v2carcgybB0411
Carg00871Cucumber (Gy14) v2carcgybB0418
Carg00871Cucumber (Gy14) v1carcgyB0470
Carg00871Cucumber (Gy14) v1carcgyB0467
Carg00871Cucurbita maxima (Rimu)carcmaB0569
Carg00871Cucurbita maxima (Rimu)carcmaB0571
Carg00871Cucurbita moschata (Rifu)carcmoB0554
Carg00871Cucurbita pepo (Zucchini)carcpeB0554
Carg00871Cucurbita pepo (Zucchini)carcpeB0556
Carg00871Cucurbita pepo (Zucchini)carcpeB0563
Carg00871Cucurbita pepo (Zucchini)carcpeB0568
Carg00871Cucurbita pepo (Zucchini)carcpeB0570
Carg00871Wild cucumber (PI 183967)carcpiB0438
Carg00871Wild cucumber (PI 183967)carcpiB0446
Carg00871Cucumber (Chinese Long) v2carcuB0433
Carg00871Cucumber (Chinese Long) v2carcuB0441
Carg00871Cucumber (Chinese Long) v3carcucB0435
Carg00871Cucumber (Chinese Long) v3carcucB0442
Carg00871Melon (DHL92) v3.5.1carmeB0403
Carg00871Melon (DHL92) v3.5.1carmeB0408
Carg00871Melon (DHL92) v3.5.1carmeB0414
Carg00871Melon (DHL92) v3.6.1carmedB0412
Carg00871Melon (DHL92) v3.6.1carmedB0418
Carg00871Watermelon (Charleston Gray)carwcgB0404
Carg00871Watermelon (97103) v1carwmB0401
Carg00871Watermelon (97103) v2carwmbB0434