Carg00703 (gene) Silver-seed gourd

Overview
NameCarg00703
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionhaloacid dehalogenase-like hydrolase domain-containing protein At4g39970
LocationCucurbita_argyrosperma_scaffold_014 : 1050020 .. 1052257 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTATTATAACAATATTTATTATCTTGAAAATCCAGATCTAAATCAAGTTGAAAGTAGGTAGTAAACTCATAAGTTAATCGAGAAAAGGTGAACTGGTGGGGGGAGTGATAATGTAAAGAGGAATAGGGATTCGTAATTGAGGCCTATAACGGTTGCAAAATCCGTTAAGTTGCCGGGCGCATTCCGCGCCGCAGAAACTCGAAGCTGGTCTCGTTTTCCATCTCTGAGCCATGGCGAGCATCACTACAATGCTCCTTCGTCCCACTTTCAAACCTTCTTCTTCTGATATGGTTTCCCTTACTCTCCGTCGATCTCTTCCTCCCACAGCCATCCACTTCCGGACCTCCAGAAAATCCACCACTCACAAACTTTTCTCCCTTTCAGTCTCAGCTTCTTTACAAGCTCTAATATTCGACTGCGACGGCGTGATCCTCGAGTCCGAGCATTGCACCGCCAAGCCTATAACGATGCGTTTGCTCATTTTGACGTTCGTTGCCCTAATTCGACGTCGCAGCCTCTCAATTAGAGCATTGAGTTCTACGACGAGCTCCAGAACCGCATTGGTGGCGGTAAACCGAAAATGCGATGGTATGGTCCTCATCATTTTATGTTAGTTTAATATATATTGGGTATCCTAGTATTTGTTTTTCTTAAAAAAAAAACTGGATTAGTATTATACATACGTACTGTTCAAGCATCCTTGCGCATTCAAAGGAAAAGTTTAGTACTGGCATAGGCTTATCGTCTTAAACTGATCTATTGGTTCTAGGGATATGACCATATATTTTGTGCTAATACGCAAGTTCGTGATACACTTTGTGTTCTGATTCTCAGAGATTTTATTAATTCCCTTTCTTTGATATCGTAGGACTGGAAAACGGACAGGTACAAAGAAATAATCAAATCTGGAACCGTAAGCAATTAATTAGGACAATCTGTCCTATCCAACTCTGTCTCATTGCTTCGCCTGGCTCCGTAACCTATCCTGAACCTGAACCTCCTTTTCCTTTACGGTCTCTTTCTTCTCTTTTTTGTTCTTTCCTTCACCCACCTATTTTCTTTATTCTTTTTCTTCTCAAACACTTGGTAAATAAGTTCATTCATCTTTCTTCCGTCTTGTCCTGGCCTGTAGTCTCGAATCAAGGCTTTCCTTCCCCAGATTGAACTCGGTAAAAGAAGAAACCTGAACCTTTGCTTCGCTCCGTCGCCTATCGGCTTCTAGATTGCTTTCATTCTACCAGGTGAAGCCCAGGCCTGGAGTTCTAAGATTGATGGATGAGGCAAAGTCTGCTGTAAGTAATATAAAGTTAACCTTCATGCTTTTTCCTAAAGTTAACCTTCATGCTTTTCCCCCTTGGATAAAGTTTCAAATTTTGAATTATCTTATCCCATTTGGGAAGATATCATCTTATTTTTGCTATCTACTGTTTTTGCCTTATATCACCTGTGGTAGTTCGATCCATGTTCCTCTTCTAATACACGTGCCAATTAGTTGGGAACATTTCTCTGTTCATTTTATCATTAACCTATTTTATAATCGTTCTTTGCGTCAACTCTATCATTAATTTGTACTTCCTGTGTCATTACTTCATTTCTTCAAGTTGCTTAAGATACTTAAGGTAAAATATCATATTGTTTTGTAGGGCAGGAAACTTGCTGTATGCTCTGCAGCTACCAAAAGTTCAGTTGTTCTTTGCCTTGAAAGTCTTATTGGAATTGTAAGCCTTCAGACTTTGTTTTAATGAATTTAGAATCAACCGTCCTTTTATCGTGGTAATAATAATGTGCTTCTCTGATTTTAGGATCGGTTTCAAAATCTTGATTGCTTTCTTGCTGGTAAGCTTACTGCTTTTCCCGTGTAACGCTTTATTGTGGAATATAAGACTGCCATGCACTATTCCTGTTTATGATTCGACGTATAGCTATTCAACAATGAGCACATAATTGAATCCATGGGTGAGGGTGATAAGCTTGAAAGAATGTATCAGAGCCTTTGCTGTAGGATAATTGAATGTCCACCCATGCAGTGGATGAACTACAAACGGTTTCCGTAGTCCTGTCTTATAACTGATGGGGTTGCCTTAAAAATCAATGATGATATCCATTTGTTTCAGTTCAGTTAGTCCTGCTAGTCAATTGATTTTTAGGTTCTTTTGTTTCTTGTAGGTGATGATGTGAAGGAAAAAAAACCTGATCCATCCATTTATATAACAGCTTCAAAAGTAACTAATACATAG

mRNA sequence

TCTATTATAACAATATTTATTATCTTGAAAATCCAGATCTAAATCAAGTTGAAAGTAGGTAGTAAACTCATAAGTTAATCGAGAAAAGGTGAACTGGTGGGGGGAGTGATAATGTAAAGAGGAATAGGGATTCGTAATTGAGGCCTATAACGGTTGCAAAATCCGTTAAGTTGCCGGGCGCATTCCGCGCCGCAGAAACTCGAAGCTGGTCTCGTTTTCCATCTCTGAGCCATGGCGAGCATCACTACAATGCTCCTTCGTCCCACTTTCAAACCTTCTTCTTCTGATATGGTTTCCCTTACTCTCCGTCGATCTCTTCCTCCCACAGCCATCCACTTCCGGACCTCCAGAAAATCCACCACTCACAAACTTTTCTCCCTTTCAGTCTCAGCTTCTTTACAAGCTCTAATATTCGACTGCGACGGCGTGATCCTCGAGTCCGAGCATTGCACCGCCAAGCCTATAACGATGCGTTTGCTCATTTTGACGTTCGTTGCCCTAATTCGACGTCGCAGCCTCTCAATTAGAGCATTGAGTTCTACGACGAGCTCCAGAACCGCATTGGTGGCGGTAAACCGAAAATGCGATGGAAACTTGCTGTATGCTCTGCAGCTACCAAAAGTTCAGTTGTTCTTTGCCTTGAAAGTCTTATTGGAATTGATCGGTTTCAAAATCTTGATTGCTTTCTTGCTGGAAAAAAAACCTGATCCATCCATTTATATAACAGCTTCAAAAGTAACTAATACATAG

Coding sequence (CDS)

ATGGCGAGCATCACTACAATGCTCCTTCGTCCCACTTTCAAACCTTCTTCTTCTGATATGGTTTCCCTTACTCTCCGTCGATCTCTTCCTCCCACAGCCATCCACTTCCGGACCTCCAGAAAATCCACCACTCACAAACTTTTCTCCCTTTCAGTCTCAGCTTCTTTACAAGCTCTAATATTCGACTGCGACGGCGTGATCCTCGAGTCCGAGCATTGCACCGCCAAGCCTATAACGATGCGTTTGCTCATTTTGACGTTCGTTGCCCTAATTCGACGTCGCAGCCTCTCAATTAGAGCATTGAGTTCTACGACGAGCTCCAGAACCGCATTGGTGGCGGTAAACCGAAAATGCGATGGAAACTTGCTGTATGCTCTGCAGCTACCAAAAGTTCAGTTGTTCTTTGCCTTGAAAGTCTTATTGGAATTGATCGGTTTCAAAATCTTGATTGCTTTCTTGCTGGAAAAAAAACCTGATCCATCCATTTATATAACAGCTTCAAAAGTAACTAATACATAG

Protein sequence

MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALIFDCDGVILESEHCTAKPITMRLLILTFVALIRRRSLSIRALSSTTSSRTALVAVNRKCDGNLLYALQLPKVQLFFALKVLLELIGFKILIAFLLEKKPDPSIYITASKVTNT
Homology
[Close]
BLAST of Carg00703 vs. NCBI nr
Match: XP_022950347.1 (haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurbita moschata])

HSP 1 Score: 154.1 bits (388), Expect = 4.4e-34
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60
          MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI
Sbjct: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60

Query: 61 FDCDGVILESEHCTAKPITMRL 83
          FDCDGVILESEHCTAKPITM +
Sbjct: 61 FDCDGVILESEHCTAKPITMSI 82

[Close]
BLAST of Carg00703 vs. NCBI nr
Match: XP_022132960.1 (haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 3.3e-21
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60
          MASIT ML+RP   PSSSDMVSL LRRSLPPTAI FR S+KST++K FSLSVSASLQALI
Sbjct: 1  MASITVMLVRPNLIPSSSDMVSLPLRRSLPPTAIRFRRSKKSTSYKPFSLSVSASLQALI 60

Query: 61 FDCDGVILESEH 73
          FDCDGVILESEH
Sbjct: 61 FDCDGVILESEH 72

[Close]
BLAST of Carg00703 vs. NCBI nr
Match: XP_023003094.1 (haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurbita maxima])

HSP 1 Score: 110.2 bits (274), Expect = 7.3e-21
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60
          MASI+TML+RP    SSSD+VS +L RSLPPTAI FRTSRKSTTHK FSLSVSASLQALI
Sbjct: 1  MASISTMLVRPNLILSSSDLVSPSLHRSLPPTAIRFRTSRKSTTHKPFSLSVSASLQALI 60

Query: 61 FDCDGVILESEH 73
          FDCDGVILESEH
Sbjct: 61 FDCDGVILESEH 72

[Close]
BLAST of Carg00703 vs. NCBI nr
Match: XP_022963402.1 (haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurbita moschata])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60
          MASI+TML+RP    SSSD+VS +  RSLPPTAI FRTSRKSTTHK FSLSVSASLQALI
Sbjct: 1  MASISTMLVRPNLILSSSDLVSPSFHRSLPPTAIRFRTSRKSTTHKPFSLSVSASLQALI 60

Query: 61 FDCDGVILESEH 73
          FDCDGVILESEH
Sbjct: 61 FDCDGVILESEH 72

[Close]
BLAST of Carg00703 vs. NCBI nr
Match: XP_023517752.1 (haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60
          MASI+TML+RP    SSSD+VS +  RSLPPTAI FRTSRKSTTHK FSLSVSASLQALI
Sbjct: 1  MASISTMLVRPNLILSSSDLVSPSFHRSLPPTAIRFRTSRKSTTHKPFSLSVSASLQALI 60

Query: 61 FDCDGVILESEH 73
          FDCDGVILESEH
Sbjct: 61 FDCDGVILESEH 72

[Close]
BLAST of Carg00703 vs. TrEMBL
Match: tr|A0A0A0KIV1|A0A0A0KIV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499830 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-20
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60
          MASITTMLLRP   PSSS ++S +LR SLPP+ I FRTSRKSTTHK FSLSVSA+LQALI
Sbjct: 1  MASITTMLLRPNLIPSSSHLLSPSLRPSLPPSIIRFRTSRKSTTHKPFSLSVSATLQALI 60

Query: 61 FDCDGVILESEH 73
          FDCDGVILESEH
Sbjct: 61 FDCDGVILESEH 72

[Close]
BLAST of Carg00703 vs. TrEMBL
Match: tr|A0A1S3B1H7|A0A1S3B1H7_CUCME (haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Cucumis melo OX=3656 GN=LOC103484962 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.1e-20
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPPTAIHFRTSRKSTTHKLFSLSVSASLQALI 60
          MASI T L+RP   PSSSD+VS +LR SLPP+AI FRT RKSTTHK FSLSVSA+LQALI
Sbjct: 1  MASIATTLVRPNLIPSSSDLVSPSLRPSLPPSAIRFRTFRKSTTHKRFSLSVSAALQALI 60

Query: 61 FDCDGVILESEH 73
          FDCDGVILESEH
Sbjct: 61 FDCDGVILESEH 72

[Close]
BLAST of Carg00703 vs. TrEMBL
Match: tr|A0A2P4I6Z9|A0A2P4I6Z9_QUESU (Haloacid dehalogenase-like hydrolase domain-containing protein OS=Quercus suber OX=58331 GN=CFP56_36938 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-06
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 8  LLRPTFKPSSSDMVSLTLRRSLPP-------TAIHFRTSRK---STTHKLFSLSVSASLQ 67
          L RPT  PSSS     T    LPP       T   FRT R    S++ KL S+S SASLQ
Sbjct: 9  LSRPTLSPSSSS----TAPSFLPPNPLCHVTTLRRFRTVRSKSFSSSKKLLSVSASASLQ 68

Query: 68 ALIFDCDGVILESEH 73
          AL+FDCDGVILESEH
Sbjct: 69 ALVFDCDGVILESEH 79

[Close]
BLAST of Carg00703 vs. TrEMBL
Match: tr|A0A2N9ETJ9|A0A2N9ETJ9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10009 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04
Identity = 43/82 (52.44%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 1  MASITTMLLRPTFKPSSSDMVSLTLRRSLPP-------TAIHFRTSRKSTTHKLFSLSVS 60
          MA + T L RPT  PSSS    L     LPP       T   FRT R  +     SLSVS
Sbjct: 1  MACMIT-LSRPTLSPSSSSSAPL----FLPPNPLCQVTTLRRFRTVRSKSFTSDKSLSVS 60

Query: 61 A---SLQALIFDCDGVILESEH 73
          A   SLQAL+FDCDGVILESEH
Sbjct: 61 ASSSSLQALVFDCDGVILESEH 77

[Close]
BLAST of Carg00703 vs. TrEMBL
Match: tr|A0A2P6RQG2|A0A2P6RQG2_ROSCH (Putative HAD hydrolase, subfamily IA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0112791 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.1e-04
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 15 PSSSDMVSLTLRRSLPPTAIHFRTSR--KSTTHKLFSLSVSAS----LQALIFDCDGVIL 73
          PSSS ++S T       T +HFR+ R   + T +  SLSVSAS    LQALIFDCDGVIL
Sbjct: 10 PSSSFLLSHT-------TRLHFRSPRNLSTPTRRPLSLSVSASSSAALQALIFDCDGVIL 66

The following BLAST results are available for this feature:
BLAST of Carg00703 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950347.14.4e-3497.56haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurb... [more]
XP_022132960.13.3e-2183.33haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Momord... [more]
XP_023003094.17.3e-2183.33haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurb... [more]
XP_022963402.12.1e-2081.94haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurb... [more]
XP_023517752.12.1e-2081.94haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Cucurb... [more]
BLAST of Carg00703 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg00703 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00703 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KIV1|A0A0A0KIV1_CUCSA3.1e-2080.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499830 PE=4 SV=1[more]
tr|A0A1S3B1H7|A0A1S3B1H7_CUCME9.1e-2079.17haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Cucu... [more]
tr|A0A2P4I6Z9|A0A2P4I6Z9_QUESU7.5e-0654.67Haloacid dehalogenase-like hydrolase domain-containing protein OS=Quercus suber ... [more]
tr|A0A2N9ETJ9|A0A2N9ETJ9_FAGSY7.0e-0452.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10009 PE=4 SV=1[more]
tr|A0A2P6RQG2|A0A2P6RQG2_ROSCH9.1e-0456.25Putative HAD hydrolase, subfamily IA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00703-RACarg00703-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR42896FAMILY NOT NAMEDcoord: 25..73
NoneNo IPR availablePANTHERPTHR42896:SF1SUBFAMILY NOT NAMEDcoord: 25..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00703CmaCh03G008100Cucurbita maxima (Rimu)carcmaB0567
Carg00703CsGy6G029610Cucumber (Gy14) v2carcgybB0418
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg00703Wax gourdcarwgoB0486
Carg00703Wax gourdcarwgoB0491
Carg00703Wax gourdcarwgoB0495
Carg00703Silver-seed gourdcarcarB064
Carg00703Silver-seed gourdcarcarB426
Carg00703Silver-seed gourdcarcarB431
Carg00703Cucumber (Gy14) v2carcgybB0410
Carg00703Cucumber (Gy14) v1carcgyB0471
Carg00703Cucumber (Gy14) v1carcgyB0467
Carg00703Cucumber (Gy14) v1carcgyB0469
Carg00703Cucurbita maxima (Rimu)carcmaB0568
Carg00703Cucurbita maxima (Rimu)carcmaB0571
Carg00703Cucurbita moschata (Rifu)carcmoB0544
Carg00703Cucurbita moschata (Rifu)carcmoB0551
Carg00703Cucurbita moschata (Rifu)carcmoB0552
Carg00703Cucurbita moschata (Rifu)carcmoB0554
Carg00703Cucurbita pepo (Zucchini)carcpeB0554
Carg00703Cucurbita pepo (Zucchini)carcpeB0555
Carg00703Cucurbita pepo (Zucchini)carcpeB0557
Carg00703Cucurbita pepo (Zucchini)carcpeB0562
Carg00703Cucurbita pepo (Zucchini)carcpeB0563
Carg00703Cucurbita pepo (Zucchini)carcpeB0571
Carg00703Wild cucumber (PI 183967)carcpiB0437
Carg00703Wild cucumber (PI 183967)carcpiB0446
Carg00703Cucumber (Chinese Long) v2carcuB0432
Carg00703Cucumber (Chinese Long) v2carcuB0441
Carg00703Cucumber (Chinese Long) v3carcucB0434
Carg00703Cucumber (Chinese Long) v3carcucB0442
Carg00703Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00703Bottle gourd (USVL1VR-Ls)carlsiB366
Carg00703Bottle gourd (USVL1VR-Ls)carlsiB370
Carg00703Melon (DHL92) v3.5.1carmeB0407
Carg00703Melon (DHL92) v3.5.1carmeB0414
Carg00703Melon (DHL92) v3.6.1carmedB0411
Carg00703Melon (DHL92) v3.6.1carmedB0413
Carg00703Melon (DHL92) v3.6.1carmedB0418
Carg00703Watermelon (Charleston Gray)carwcgB0397
Carg00703Watermelon (Charleston Gray)carwcgB0402
Carg00703Watermelon (97103) v1carwmB0399
Carg00703Watermelon (97103) v1carwmB0407
Carg00703Watermelon (97103) v1carwmB0408
Carg00703Watermelon (97103) v2carwmbB0426
Carg00703Watermelon (97103) v2carwmbB0431