Carg00494 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00494
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rho GDP-dissociation inhibitor 1 family protein
Location	Cucurbita_argyrosperma_scaffold_014 : 32932 .. 33732 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTGACAACAATGAAGACGGAAATGGTTGTCCTGAGACCAAGAAAATAGTTGGAGTTGAAGAATATGAAGGTTGGGATGAAAGTAGAAAAAGGAGTGAGGGTTTTATATGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGGATGATGAAGATGAAGAGGGAAGGAAGATTGAGTTGGGTCCTCAGTGTACGCTGAAACAACAATTTGAGAAAGATAAGGTCCGATCTTTTTCATTCTCCTTTTATGGGTCGAAGCAATTCTATTCATGCTCAATTTCTAATGCTTCCAAAATGGTTTCTCTTAGGATGACGAAAGCCTGAGGAGGTGGAAGGAACAGCTTCTAGGGAGTGTGGATATTTCAGCTGTTGGAGGTAATTCTGTAAACCTTTTCTTATTAGCTTTCAGTCATACAGTCAACCATCATATCGTAAACTAATGCTAAAAAAAAAAAAAAAAAAACAGAAACTTTGGAACCAGAGGTGAAGATTCTTAGCCTAGCGATTAGAAGCCCAGGAAGGGCAGACATTGTTCTACAAGTTCCTGAGAGTGGGAATCCAAAAGGGTCATGGTTTACATTGAAAGAAGGCAGCCGTTACAGCTTGATCTTCACCTTCAAAGTTAGCAATAACATTGTTGCAGGTCTGAAATACGCCAACACAGTCTGGAAAACTGGTGTCAAAGGTAGATTAGATAGATATCTTCTTTCTCAACTCTTTAGTATCTCTCTCATCAAAGACTCAAGCCATTTTTGGTGTTTAAAATCTCTACAAAACAGTCGATAG

mRNA sequence

ATGGGTCTTGACAACAATGAAGACGGAAATGGTTGTCCTGAGACCAAGAAAATAGTTGGAGTTGAAGAATATGAAGGTTGGGATGAAAGTAGAAAAAGGAGTGAGGGTTTTATATGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGGATGATGAAGATGAAGAGGGAAGGAAGATTGAGTTGGGTCCTCAGTGTACGCTGAAACAACAATTTGAGAAAGATAAGGATGACGAAAGCCTGAGGAGGTGGAAGGAACAGCTTCTAGGGAGTGTGGATATTTCAGCTGTTGGAGAAACTTTGGAACCAGAGGTGAAGATTCTTAGCCTAGCGATTAGAAGCCCAGGAAGGGCAGACATTGTTCTACAAGTTCCTGAGAGTGGGAATCCAAAAGGGTCATGGTTTACATTGAAAGAAGGCAGCCGTTACAGCTTGATCTTCACCTTCAAAGTTAGCAATAACATTGTTGCAGGTCTGAAATACGCCAACACAGTCTGGAAAACTGGTGTCAAAGGTAGATTAGATAGATATCTTCTTTCTCAACTCTTTAGTATCTCTCTCATCAAAGACTCAAGCCATTTTTGGTGTTTAAAATCTCTACAAAACAGTCGATAG

Coding sequence (CDS)

ATGGGTCTTGACAACAATGAAGACGGAAATGGTTGTCCTGAGACCAAGAAAATAGTTGGAGTTGAAGAATATGAAGGTTGGGATGAAAGTAGAAAAAGGAGTGAGGGTTTTATATGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGGATGATGAAGATGAAGAGGGAAGGAAGATTGAGTTGGGTCCTCAGTGTACGCTGAAACAACAATTTGAGAAAGATAAGGATGACGAAAGCCTGAGGAGGTGGAAGGAACAGCTTCTAGGGAGTGTGGATATTTCAGCTGTTGGAGAAACTTTGGAACCAGAGGTGAAGATTCTTAGCCTAGCGATTAGAAGCCCAGGAAGGGCAGACATTGTTCTACAAGTTCCTGAGAGTGGGAATCCAAAAGGGTCATGGTTTACATTGAAAGAAGGCAGCCGTTACAGCTTGATCTTCACCTTCAAAGTTAGCAATAACATTGTTGCAGGTCTGAAATACGCCAACACAGTCTGGAAAACTGGTGTCAAAGGTAGATTAGATAGATATCTTCTTTCTCAACTCTTTAGTATCTCTCTCATCAAAGACTCAAGCCATTTTTGGTGTTTAAAATCTCTACAAAACAGTCGATAG

Protein sequence

MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFICAAAAAAAAAAAAAEDDEDEEGRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGRADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVKGRLDRYLLSQLFSISLIKDSSHFWCLKSLQNSR

Homology

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BLAST of Carg00494 vs. NCBI nr
Match: XP_022950568.1 (rho GDP-dissociation inhibitor 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 165/174 (94.83%), Postives = 165/174 (94.83%), Query Frame = 0


Query: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFIXXXXXXXXXXXXXXXXXXXXXX 60
           MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFI        XXXXXXXXXXXXX 
Sbjct: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFI-------CXXXXXXXXXXXXXG 60

Query: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120
           RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR
Sbjct: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120

Query: 121 ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK
Sbjct: 121 ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 167

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BLAST of Carg00494 vs. NCBI nr
Match: XP_022950567.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 296.6 bits (758), Expect = 6.6e-77
Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFI---XXXXXXXXXXXXXXXXXXX 60
           MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFI   XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFIXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRS 120
           XXXRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRS
Sbjct: 61  XXXRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRS 120

Query: 121 PGRADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           PGRADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK
Sbjct: 121 PGRADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 177

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BLAST of Carg00494 vs. NCBI nr
Match: XP_022979079.1 (rho GDP-dissociation inhibitor 1-like [Cucurbita maxima] >XP_022979080.1 rho GDP-dissociation inhibitor 1-like [Cucurbita maxima] >XP_022979081.1 rho GDP-dissociation inhibitor 1-like [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 2.5e-76
Identity = 163/174 (93.68%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFIXXXXXXXXXXXXXXXXXXXXXX 60
           MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGF+        XXXXXXXXXXXXX 
Sbjct: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFM-------CXXXXXXXXXXXXXG 60

Query: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120
           RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR
Sbjct: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120

Query: 121 ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           ADIVLQVPESGNPKG WFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK
Sbjct: 121 ADIVLQVPESGNPKGPWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 167

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BLAST of Carg00494 vs. NCBI nr
Match: XP_023543408.1 (rho GDP-dissociation inhibitor 1-like [Cucurbita pepo subsp. pepo] >XP_023543409.1 rho GDP-dissociation inhibitor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.7 bits (748), Expect = 9.6e-76
Identity = 157/174 (90.23%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDESRKRSEGFIXXXXXXXXXXXXXXXXXXXXXX 60
           MGLDNNEDGNGCPETKKIVGVEE EGWDESRKRSEGFI             XXXXXXX  
Sbjct: 1   MGLDNNEDGNGCPETKKIVGVEEVEGWDESRKRSEGFI---------CAAAXXXXXXXEG 60

Query: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120
           RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR
Sbjct: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120

Query: 121 ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           ADIVLQVPESGNPKG WFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK
Sbjct: 121 ADIVLQVPESGNPKGPWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 165

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BLAST of Carg00494 vs. NCBI nr
Match: XP_008440067.1 (PREDICTED: rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo] >XP_016899134.1 PREDICTED: rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 3.5e-62
Identity = 134/177 (75.71%), Postives = 139/177 (78.53%), Query Frame = 0


Query: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDE---SRKRSEGFIXXXXXXXXXXXXXXXXXXX 60
           MGLDNNEDGNG  E KKI GVEE  G D    SRK SE  I                   
Sbjct: 1   MGLDNNEDGNGSLEIKKIGGVEEENGDDSVGLSRKMSETSI-----------CAAEDDED 60

Query: 61  XXXRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRS 120
              RKIELGPQCTLK+Q EKDKDDESLRRWKEQLLGSVD+SAVGETLEPEVKILSLAIR+
Sbjct: 61  EEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVGETLEPEVKILSLAIRT 120

Query: 121 PGRADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           PGRADIVLQVPE+GNPKG WFTLKEGSRY+LIFTFKVSNNIVAGLKYANTVWKTGVK
Sbjct: 121 PGRADIVLQVPETGNPKGLWFTLKEGSRYNLIFTFKVSNNIVAGLKYANTVWKTGVK 166

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BLAST of Carg00494 vs. TAIR10
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 182.2 bits (461), Expect = 3.3e-46
Identity = 85/113 (75.22%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 62  KIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGRA 121
           K++LGPQ T+K+  EKDKDDESLR+WKEQLLGSVD++ +GETL+PEV+I SLAI SPGR 
Sbjct: 61  KLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAIISPGRP 120

Query: 122 DIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           DIVL VPE+GNPKG WFTLKEGS+Y+L FTF V+NNIV+GL+Y NTVWKTGVK
Sbjct: 121 DIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVK 173

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BLAST of Carg00494 vs. TAIR10
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-43
Identity = 82/114 (71.93%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 63  IELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGRAD 122
           +ELGP   LK+Q EKDKDDESLRRWKEQLLGSVD+  VGET +P VKIL+L IRSP R D
Sbjct: 45  LELGPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILTLTIRSPDRED 104

Query: 123 IVLQVPESGNP--KGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           +VL +PE+G P  KG WFTLKEGS+Y+LIFTF+V+NNIV+GL+Y+NTVWKTG+K
Sbjct: 105 MVLTIPENGKPASKGPWFTLKEGSKYTLIFTFRVTNNIVSGLQYSNTVWKTGIK 158

[Close]

BLAST of Carg00494 vs. TAIR10
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 168.7 bits (426), Expect = 3.8e-42
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120
           +K+ELGP   LK+Q E+DKDDESLRRWKEQLLG VD+  VGET +P VKIL L IRSP R
Sbjct: 43  KKLELGPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDR 102

Query: 121 ADIVLQVPESG--NPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
            ++VL +PE G  NPKG WFT+KEGS+Y+L+F F+V+NNIV+GL+Y NTVWKTGVK
Sbjct: 103 EEMVLTIPEDGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVK 158

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BLAST of Carg00494 vs. Swiss-Prot
Match: sp|Q9SFC6|GDIR_ARATH (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.9e-45
Identity = 85/113 (75.22%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 62  KIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGRA 121
           K++LGPQ T+K+  EKDKDDESLR+WKEQLLGSVD++ +GETL+PEV+I SLAI SPGR 
Sbjct: 61  KLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAIISPGRP 120

Query: 122 DIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           DIVL VPE+GNPKG WFTLKEGS+Y+L FTF V+NNIV+GL+Y NTVWKTGVK
Sbjct: 121 DIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVK 173

[Close]

BLAST of Carg00494 vs. Swiss-Prot
Match: sp|Q61599|GDIR2_MOUSE (Rho GDP-dissociation inhibitor 2 OS=Mus musculus OX=10090 GN=Arhgdib PE=1 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 67  PQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAI---RSPGRADI 126
           PQ +LK+  E DKDDESL ++K+ LLG  D+  V +   P V +  L++    +PG   +
Sbjct: 27  PQKSLKELQEMDKDDESLTKYKKTLLG--DVPVVADPTVPNVTVTRLSLVCDSAPGPITM 86

Query: 127 VLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
            L        K + F LKEG  Y +   FKV+ +IV+GLKY    ++TG++
Sbjct: 87  DLTGDLEALKKDT-FVLKEGIEYRVKINFKVNKDIVSGLKYVQHTYRTGMR 134

[Close]

BLAST of Carg00494 vs. Swiss-Prot
Match: sp|Q9TU03|GDIR2_BOVIN (Rho GDP-dissociation inhibitor 2 OS=Bos taurus OX=9913 GN=ARHGDIB PE=2 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-10
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 67  PQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAI---RSPGRADI 126
           PQ +LK+  E DKDDESL ++K+ LLG  D   V +   P V +  L +    +PG   +
Sbjct: 27  PQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPGPITM 86

Query: 127 VLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
            L   +    K   F LKEG  Y +   FKV+ +IV+GLKY    ++TGVK
Sbjct: 87  DL-TGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQHTYRTGVK 134

[Close]

BLAST of Carg00494 vs. Swiss-Prot
Match: sp|P52565|GDIR1_HUMAN (Rho GDP-dissociation inhibitor 1 OS=Homo sapiens OX=9606 GN=ARHGDIA PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 68  QCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAI---RSPGRADIV 127
           Q ++++  E DKDDESLR++KE LLG V +SA  +   P V +  L +    +PG  ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 91

Query: 128 LQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           L        K S F LKEG  Y +  +F+V+  IV+G+KY    ++ GVK
Sbjct: 92  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK 138

[Close]

BLAST of Carg00494 vs. Swiss-Prot
Match: sp|Q4R4J0|GDIR1_MACFA (Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis OX=9541 GN=ARHGDIA PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 68  QCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAI---RSPGRADIV 127
           Q ++++  E DKDDESLR++KE LLG V +SA  +   P V +  L +    +PG  ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 91

Query: 128 LQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           L        K S F LKEG  Y +  +F+V+  IV+G+KY    ++ GVK
Sbjct: 92  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK 138

[Close]

BLAST of Carg00494 vs. TrEMBL
Match: tr|A0A1S3B0Z9|A0A1S3B0Z9_CUCME (rho GDP-dissociation inhibitor 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484655 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.3e-62
Identity = 134/177 (75.71%), Postives = 139/177 (78.53%), Query Frame = 0


Query: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDE---SRKRSEGFIXXXXXXXXXXXXXXXXXXX 60
           MGLDNNEDGNG  E KKI GVEE  G D    SRK SE  I                   
Sbjct: 1   MGLDNNEDGNGSLEIKKIGGVEEENGDDSVGLSRKMSETSI-----------CAAEDDED 60

Query: 61  XXXRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRS 120
              RKIELGPQCTLK+Q EKDKDDESLRRWKEQLLGSVD+SAVGETLEPEVKILSLAIR+
Sbjct: 61  EEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVGETLEPEVKILSLAIRT 120

Query: 121 PGRADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           PGRADIVLQVPE+GNPKG WFTLKEGSRY+LIFTFKVSNNIVAGLKYANTVWKTGVK
Sbjct: 121 PGRADIVLQVPETGNPKGLWFTLKEGSRYNLIFTFKVSNNIVAGLKYANTVWKTGVK 166

[Close]

BLAST of Carg00494 vs. TrEMBL
Match: tr|A0A1S3B0V5|A0A1S3B0V5_CUCME (rho GDP-dissociation inhibitor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484655 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 5.7e-61
Identity = 134/178 (75.28%), Postives = 139/178 (78.09%), Query Frame = 0


Query: 1   MGLDNNEDGNGCPETKKIVGVEEYEGWDE---SRKRSEGFIXXXXXXXXXXXXXXXXXXX 60
           MGLDNNEDGNG  E KKI GVEE  G D    SRK SE  I                   
Sbjct: 1   MGLDNNEDGNGSLEIKKIGGVEEENGDDSVGLSRKMSETSI-----------CAAEDDED 60

Query: 61  XXXRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVG-ETLEPEVKILSLAIR 120
              RKIELGPQCTLK+Q EKDKDDESLRRWKEQLLGSVD+SAVG ETLEPEVKILSLAIR
Sbjct: 61  EEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVGAETLEPEVKILSLAIR 120

Query: 121 SPGRADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
           +PGRADIVLQVPE+GNPKG WFTLKEGSRY+LIFTFKVSNNIVAGLKYANTVWKTGVK
Sbjct: 121 TPGRADIVLQVPETGNPKGLWFTLKEGSRYNLIFTFKVSNNIVAGLKYANTVWKTGVK 167

[Close]

BLAST of Carg00494 vs. TrEMBL
Match: tr|A0A2K1X938|A0A2K1X938_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G013700v3 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.6e-50
Identity = 98/118 (83.05%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120
           RKIELGPQCTLK+Q EKDKDDESLRRWKEQLLG+VDI A GETLEPEVKILSL I+S GR
Sbjct: 75  RKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGAVDIEAAGETLEPEVKILSLEIKSSGR 134

Query: 121 ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVKGRLD 179
            DIVL VPE+G PKGSWFTLKEGSRYSL FTF+V NNIV+GLKY NTVWKTG+KG++D
Sbjct: 135 PDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKYTNTVWKTGIKGKID 192

[Close]

BLAST of Carg00494 vs. TrEMBL
Match: tr|A0A067KNI7|A0A067KNI7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06445 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.9e-49
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120
           RKIELGPQC+LK+Q EKDKDDESLRRWKEQLLGSVD +AVGETL+PEVKILSLAI+SPGR
Sbjct: 71  RKIELGPQCSLKEQLEKDKDDESLRRWKEQLLGSVDFNAVGETLDPEVKILSLAIKSPGR 130

Query: 121 ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
            DIVL VPE+G PKG WFTLKEGSRYSL FTFKV NNIV+GLKY NTVWKTGVK
Sbjct: 131 PDIVLSVPENGTPKGVWFTLKEGSRYSLQFTFKVGNNIVSGLKYTNTVWKTGVK 184

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BLAST of Carg00494 vs. TrEMBL
Match: tr|B9S3J1|B9S3J1_RICCO (Rho GDP-dissociation inhibitor, putative OS=Ricinus communis OX=3988 GN=RCOM_0669590 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 61  RKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVGETLEPEVKILSLAIRSPGR 120
           RKIELGPQ TLK+Q EKDKDDESLRRWKEQLLGSVDI+AVGETL+PEVKI+SLAI+SPGR
Sbjct: 63  RKIELGPQYTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLDPEVKIISLAIKSPGR 122

Query: 121 ADIVLQVPESGNPKGSWFTLKEGSRYSLIFTFKVSNNIVAGLKYANTVWKTGVK 175
            DIVL +PE GNPKG+WFTLKEGSRYSL FTF+V NNIV+GLKY NTVWKTGVK
Sbjct: 123 DDIVLSIPEDGNPKGTWFTLKEGSRYSLQFTFQVGNNIVSGLKYTNTVWKTGVK 176

The following BLAST results are available for this feature:

BLAST of Carg00494 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950568.1	3.0e-77	94.83	rho GDP-dissociation inhibitor 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022950567.1	6.6e-77	98.31	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022979079.1	2.5e-76	93.68	rho GDP-dissociation inhibitor 1-like [Cucurbita maxima] >XP_022979080.1 rho GDP...	[more]
XP_023543408.1	9.6e-76	90.23	rho GDP-dissociation inhibitor 1-like [Cucurbita pepo subsp. pepo] >XP_023543409...	[more]
XP_008440067.1	3.5e-62	75.71	PREDICTED: rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo] >XP_016899...	[more]

BLAST of Carg00494 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07880.1	3.3e-46	75.22	Immunoglobulin E-set superfamily protein	[more]
AT1G12070.1	2.0e-43	71.93	Immunoglobulin E-set superfamily protein	[more]
AT1G62450.1	3.8e-42	68.10	Immunoglobulin E-set superfamily protein	[more]

BLAST of Carg00494 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SFC6\|GDIR_ARATH	5.9e-45	75.22	Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV...	[more]
sp\|Q61599\|GDIR2_MOUSE	2.1e-10	37.84	Rho GDP-dissociation inhibitor 2 OS=Mus musculus OX=10090 GN=Arhgdib PE=1 SV=3	[more]
sp\|Q9TU03\|GDIR2_BOVIN	3.6e-10	39.64	Rho GDP-dissociation inhibitor 2 OS=Bos taurus OX=9913 GN=ARHGDIB PE=2 SV=3	[more]
sp\|P52565\|GDIR1_HUMAN	1.4e-09	38.18	Rho GDP-dissociation inhibitor 1 OS=Homo sapiens OX=9606 GN=ARHGDIA PE=1 SV=3	[more]
sp\|Q4R4J0\|GDIR1_MACFA	1.4e-09	38.18	Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis OX=9541 GN=ARHGDIA PE=2 ...	[more]

BLAST of Carg00494 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B0Z9\|A0A1S3B0Z9_CUCME	2.3e-62	75.71	rho GDP-dissociation inhibitor 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
tr\|A0A1S3B0V5\|A0A1S3B0V5_CUCME	5.7e-61	75.28	rho GDP-dissociation inhibitor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
tr\|A0A2K1X938\|A0A2K1X938_POPTR	4.6e-50	83.05	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G013700v3 PE=...	[more]
tr\|A0A067KNI7\|A0A067KNI7_JATCU	3.9e-49	85.96	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06445 PE=4 SV=1	[more]
tr\|B9S3J1\|B9S3J1_RICCO	8.6e-49	85.09	Rho GDP-dissociation inhibitor, putative OS=Ricinus communis OX=3988 GN=RCOM_066...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0005094	Rho GDP-dissociation inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR014756	Ig_E-set
IPR024792	RhoGDI_dom_sf
IPR000406	Rho_GDI

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00494-RA	Carg00494-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000406	Rho protein GDP-dissociation inhibitor	PFAM	PF02115	Rho_GDI	coord: 50..174 e-value: 1.6E-41 score: 142.1
IPR000406	Rho protein GDP-dissociation inhibitor	PANTHER	PTHR10980	RHO GDP-DISSOCIATION INHIBITOR	coord: 18..175
IPR024792	Rho GDP-dissociation inhibitor domain superfamily	GENE3D	G3DSA:2.70.50.30		coord: 61..185 e-value: 1.3E-31 score: 111.7
None	No IPR available	PANTHER	PTHR10980:SF30	IMMUNOGLOBULIN E-SET SUPERFAMILY PROTEIN	coord: 18..175
IPR014756	Immunoglobulin E-set	SUPERFAMILY	SSF81296	E set domains	coord: 48..175

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00494	Cla014406	Watermelon (97103) v1	carwmB0407
Carg00494	MELO3C007434	Melon (DHL92) v3.5.1	carmeB0413
Carg00494	ClCG01G021490	Watermelon (Charleston Gray)	carwcgB0397
Carg00494	CSPI01G16010	Wild cucumber (PI 183967)	carcpiB0435
Carg00494	CSPI06G33050	Wild cucumber (PI 183967)	carcpiB0446
Carg00494	Cucsa.044780	Cucumber (Gy14) v1	carcgyB0466
Carg00494	CmaCh03G005700	Cucurbita maxima (Rimu)	carcmaB0567
Carg00494	CmaCh13G003970	Cucurbita maxima (Rimu)	carcmaB0559
Carg00494	CmoCh03G005990	Cucurbita moschata (Rifu)	carcmoB0551
Carg00494	Lsi01G004760	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00494	Cp4.1LG10g10050	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00494	Cp4.1LG20g06570	Cucurbita pepo (Zucchini)	carcpeB0564
Carg00494	CsGy6G032640	Cucumber (Gy14) v2	carcgybB0418
Carg00494	MELO3C007434.2	Melon (DHL92) v3.6.1	carmedB0417
Carg00494	CsaV3_6G048510	Cucumber (Chinese Long) v3	carcucB0442

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00494	Silver-seed gourd	carcarB425
Carg00494	Cucumber (Gy14) v2	carcgybB0408
Carg00494	Cucurbita maxima (Rimu)	carcmaB0562
Carg00494	Cucurbita maxima (Rimu)	carcmaB0571
Carg00494	Cucurbita moschata (Rifu)	carcmoB0554
Carg00494	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00494	Cucumber (Chinese Long) v2	carcuB0441
Carg00494	Watermelon (97103) v2	carwmbB0426
Carg00494	Wax gourd	carwgoB0488