Carg00441 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00441
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U-box domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_001 : 2488655 .. 2489617 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGTTGCATCTTTCCAATCATCATCGTCCATGAGGTCGATGAGTGTTGCAACTGCACATAAGAATATAACCCAGTGTGTAGCCGATGCTCGGTCGGACGCTCATGACGTTCAGGAAAAGGCTCTTAAAGACTTGGTTGCCATTACCCAGGTTAGTCCCCTATACAGGAACTTGCTTGCACAAGTAGATGGATCAATTCCAATTCTTATAGCTCTCTCCAAATCCTCTTCCTCCACCGTCCAATCCCTTTCACTGTCTATTCTCTTCAATCTTTCTCTGAATAATGACATGAAAAAGCTTCTTGCATCAATGGAAACCATTTACCATCTCAATACGCTCATATCCTTGGGCTCGCCCGAGACCGTCAAGTTAGCGTCCTCATTGATTTGTAGTCTTGCAATGCTAGACAAGAACAAGGCTAAGTTTGGGGTAGCTGGTACCATACAGTTGTTGGTTAGAGCACTTACTGTCCCTAGTGTTCCTGCTGCTCATCACCTTCTCTGTTCTCTAGCTGAACTAGGCCAGTTTCATGGAAACTGCACGGTGGCTGTTCGATCAGGAGCCATCTCGGTTCTTGTCGACGTAGTGGAGAGTACCAGTGGAGAGGATCTCGCTGGCACTGCTCTTGTTGTTCTCGGTCTCTTGGCTAGATTCGAGGAGGGGTTGAGGGCTTTGATAAAAATCGATCGGATCGTTTATTCAATGGTCAATGTGTTGAAAGGGAGGTGTATGTTGAGTAAAGAAGGTGCAACCGAGATCCTTTTGCGTTTGTTCGACGAGAGTGAAGGTTGTTTGAGAGACGCATTGAGGTTCCCGGAGTTTTTAGGCGTCGTTGCAGATCTATCTGTGAGAGGATCCACAAAAGCTAGAGAAAGAGCTACACTACTTATGAATAAGATCATGAATAATGACTTGGAGACGTATTCAAATGCCGACTCAGTGTATTCGCCATGGTATTGA

mRNA sequence

ATGTCAGTTGCATCTTTCCAATCATCATCGTCCATGAGGTCGATGAGTGTTGCAACTGCACATAAGAATATAACCCAGTGTGTAGCCGATGCTCGGTCGGACGCTCATGACGTTCAGGAAAAGGCTCTTAAAGACTTGGTTGCCATTACCCAGGTTAGTCCCCTATACAGGAACTTGCTTGCACAAGTAGATGGATCAATTCCAATTCTTATAGCTCTCTCCAAATCCTCTTCCTCCACCGTCCAATCCCTTTCACTGTCTATTCTCTTCAATCTTTCTCTGAATAATGACATGAAAAAGCTTCTTGCATCAATGGAAACCATTTACCATCTCAATACGCTCATATCCTTGGGCTCGCCCGAGACCGTCAAGTTAGCGTCCTCATTGATTTGTAGTCTTGCAATGCTAGACAAGAACAAGGCTAAGTTTGGGGTAGCTGGTACCATACAGTTGTTGGTTAGAGCACTTACTGTCCCTAGTGTTCCTGCTGCTCATCACCTTCTCTGTTCTCTAGCTGAACTAGGCCAGTTTCATGGAAACTGCACGGTGGCTGTTCGATCAGGAGCCATCTCGGTTCTTGTCGACGTAGTGGAGAGTACCAGTGGAGAGGATCTCGCTGGCACTGCTCTTGTTGTTCTCGGTCTCTTGGCTAGATTCGAGGAGGGGTTGAGGGCTTTGATAAAAATCGATCGGATCGTTTATTCAATGGTCAATGTGTTGAAAGGGAGGTGTATGTTGAGTAAAGAAGGTGCAACCGAGATCCTTTTGCGTTTGTTCGACGAGAGTGAAGGTTGTTTGAGAGACGCATTGAGGTTCCCGGAGTTTTTAGGCGTCGTTGCAGATCTATCTGTGAGAGGATCCACAAAAGCTAGAGAAAGAGCTACACTACTTATGAATAAGATCATGAATAATGACTTGGAGACGTATTCAAATGCCGACTCAGTGTATTCGCCATGGTATTGA

Coding sequence (CDS)

ATGTCAGTTGCATCTTTCCAATCATCATCGTCCATGAGGTCGATGAGTGTTGCAACTGCACATAAGAATATAACCCAGTGTGTAGCCGATGCTCGGTCGGACGCTCATGACGTTCAGGAAAAGGCTCTTAAAGACTTGGTTGCCATTACCCAGGTTAGTCCCCTATACAGGAACTTGCTTGCACAAGTAGATGGATCAATTCCAATTCTTATAGCTCTCTCCAAATCCTCTTCCTCCACCGTCCAATCCCTTTCACTGTCTATTCTCTTCAATCTTTCTCTGAATAATGACATGAAAAAGCTTCTTGCATCAATGGAAACCATTTACCATCTCAATACGCTCATATCCTTGGGCTCGCCCGAGACCGTCAAGTTAGCGTCCTCATTGATTTGTAGTCTTGCAATGCTAGACAAGAACAAGGCTAAGTTTGGGGTAGCTGGTACCATACAGTTGTTGGTTAGAGCACTTACTGTCCCTAGTGTTCCTGCTGCTCATCACCTTCTCTGTTCTCTAGCTGAACTAGGCCAGTTTCATGGAAACTGCACGGTGGCTGTTCGATCAGGAGCCATCTCGGTTCTTGTCGACGTAGTGGAGAGTACCAGTGGAGAGGATCTCGCTGGCACTGCTCTTGTTGTTCTCGGTCTCTTGGCTAGATTCGAGGAGGGGTTGAGGGCTTTGATAAAAATCGATCGGATCGTTTATTCAATGGTCAATGTGTTGAAAGGGAGGTGTATGTTGAGTAAAGAAGGTGCAACCGAGATCCTTTTGCGTTTGTTCGACGAGAGTGAAGGTTGTTTGAGAGACGCATTGAGGTTCCCGGAGTTTTTAGGCGTCGTTGCAGATCTATCTGTGAGAGGATCCACAAAAGCTAGAGAAAGAGCTACACTACTTATGAATAAGATCATGAATAATGACTTGGAGACGTATTCAAATGCCGACTCAGTGTATTCGCCATGGTATTGA

Protein sequence

MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLLAQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSPETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGNCTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVLKGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNKIMNNDLETYSNADSVYSPWY

Homology

[Close]

BLAST of Carg00441 vs. NCBI nr
Match: XP_022982428.1 (U-box domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 587.4 bits (1513), Expect = 2.9e-164
Identity = 317/320 (99.06%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL 60
           MSV+SFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL
Sbjct: 32  MSVSSFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL 91

Query: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120
           AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP
Sbjct: 92  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 151

Query: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180
           ETVKL+SSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN
Sbjct: 152 ETVKLSSSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 211

Query: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240
           CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL
Sbjct: 212 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 271

Query: 241 KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300
           KGRCMLSKEGATEILLRLF+ESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK
Sbjct: 272 KGRCMLSKEGATEILLRLFEESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 331

Query: 301 IMNNDLETYSNADSVYSPWY 321
           IMNNDLETYSNADSVYSPWY
Sbjct: 332 IMNNDLETYSNADSVYSPWY 351

[Close]

BLAST of Carg00441 vs. NCBI nr
Match: XP_023524300.1 (U-box domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >XP_023524301.1 U-box domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >XP_023524302.1 U-box domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >XP_023524303.1 U-box domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 586.3 bits (1510), Expect = 6.5e-164
Identity = 318/320 (99.38%), Postives = 318/320 (99.38%), Query Frame = 0


Query: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL 60
           MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQ KALKDLVAITQVSPLYRNLL
Sbjct: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQGKALKDLVAITQVSPLYRNLL 60

Query: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120
           AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP
Sbjct: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120

Query: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180
           ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN
Sbjct: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180

Query: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240
           CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL
Sbjct: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240

Query: 241 KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300
           KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK
Sbjct: 241 KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300

Query: 301 IMNNDLETYSNADSVYSPWY 321
           I NNDLETYSNADSVYSPWY
Sbjct: 301 ITNNDLETYSNADSVYSPWY 320

[Close]

BLAST of Carg00441 vs. NCBI nr
Match: XP_022940416.1 (U-box domain-containing protein 1-like [Cucurbita moschata] >XP_022940417.1 U-box domain-containing protein 1-like [Cucurbita moschata] >XP_022940418.1 U-box domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 585.9 bits (1509), Expect = 8.4e-164
Identity = 317/320 (99.06%), Postives = 318/320 (99.38%), Query Frame = 0


Query: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL 60
           MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLV ITQVSPLYRNLL
Sbjct: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVVITQVSPLYRNLL 60

Query: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120
           AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP
Sbjct: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120

Query: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180
           ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN
Sbjct: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180

Query: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240
           CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL
Sbjct: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240

Query: 241 KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300
           KGRCMLSKEGATEILL+LFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK
Sbjct: 241 KGRCMLSKEGATEILLQLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300

Query: 301 IMNNDLETYSNADSVYSPWY 321
           IMNNDLE YSNADSVYSPWY
Sbjct: 301 IMNNDLEMYSNADSVYSPWY 320

[Close]

BLAST of Carg00441 vs. NCBI nr
Match: XP_004136472.1 (PREDICTED: U-box domain-containing protein 8-like [Cucumis sativus] >KGN60114.1 hypothetical protein Csa_3G878830 [Cucumis sativus])

HSP 1 Score: 523.5 bits (1347), Expect = 5.1e-145
Identity = 280/319 (87.77%), Postives = 300/319 (94.04%), Query Frame = 0


Query: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL 60
           MSVASFQSSSSMRSMSVATAHK IT+C+A ARSDAH+VQEKAL++LV ITQVSPL+RNLL
Sbjct: 1   MSVASFQSSSSMRSMSVATAHKTITECMAGARSDAHEVQEKALQNLVTITQVSPLHRNLL 60

Query: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120
            QVDGSI  LI LSKSSSST+QSLSLSILFNLSLN+DMKKLLASMETIYHLNTLISLGSP
Sbjct: 61  VQVDGSISTLIGLSKSSSSTIQSLSLSILFNLSLNHDMKKLLASMETIYHLNTLISLGSP 120

Query: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180
           +TVKL+SSLICSLAMLDKNKAKFGVAGTIQLLVRAL VP++PAAHHLLCSLAELGQFHGN
Sbjct: 121 DTVKLSSSLICSLAMLDKNKAKFGVAGTIQLLVRALKVPNIPAAHHLLCSLAELGQFHGN 180

Query: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240
           CTVAVRSGAI VL+ VVESTSGEDLAGTALVVLGLLARFEEGLRALIK DRIV SMVNVL
Sbjct: 181 CTVAVRSGAIQVLISVVESTSGEDLAGTALVVLGLLARFEEGLRALIKTDRIVISMVNVL 240

Query: 241 KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300
           KGRCMLSKEGATEILLRLFDESEGCL DA + PEF GV+ADLSVRGS KARERA+LLMNK
Sbjct: 241 KGRCMLSKEGATEILLRLFDESEGCLSDASKLPEFFGVIADLSVRGSAKARERASLLMNK 300

Query: 301 IMNNDLETYSNADSVYSPW 320
           IMN+D ++YSN+DSVYS W
Sbjct: 301 IMNSDFDSYSNSDSVYSQW 319

[Close]

BLAST of Carg00441 vs. NCBI nr
Match: XP_022139603.1 (U-box domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 507.7 bits (1306), Expect = 2.9e-140
Identity = 275/320 (85.94%), Postives = 297/320 (92.81%), Query Frame = 0


Query: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL 60
           MSVASF SSSSMRSM+VATAHK IT+CVADARSD  +VQEKAL++LV+ITQVSPLYRNLL
Sbjct: 1   MSVASFHSSSSMRSMTVATAHKAITECVADARSDTLEVQEKALQNLVSITQVSPLYRNLL 60

Query: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120
           AQVDG+IPILIALSKSSSS++QSLSLSILFNLSLN+DMK+LLASMETIYHLN LISLGSP
Sbjct: 61  AQVDGAIPILIALSKSSSSSIQSLSLSILFNLSLNHDMKRLLASMETIYHLNALISLGSP 120

Query: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180
           ETVKL+SSLICSLAMLDKNKAKFGVAGTI+LLVRAL+VPSV  AHH+LCSLAELGQFHGN
Sbjct: 121 ETVKLSSSLICSLAMLDKNKAKFGVAGTIRLLVRALSVPSVLGAHHILCSLAELGQFHGN 180

Query: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240
           CTVAVRSGAI VL+ VVEST  EDLAGTAL VLGLLARFEEGLRAL+K D IV SMVNVL
Sbjct: 181 CTVAVRSGAIPVLISVVESTGVEDLAGTALTVLGLLARFEEGLRALMKTDCIVNSMVNVL 240

Query: 241 KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300
           KGRCMLSKEGATEILLRLFDES+ CLRDAL  PEFLGVVADLSVRGS KARERA LLMNK
Sbjct: 241 KGRCMLSKEGATEILLRLFDESDSCLRDALSMPEFLGVVADLSVRGSAKARERAALLMNK 300

Query: 301 IMNNDLETYSNADSVYSPWY 321
           +MN+D++ YSNA SVYS WY
Sbjct: 301 VMNSDVDAYSNAVSVYSQWY 320

[Close]

BLAST of Carg00441 vs. TAIR10
Match: AT4G21350.1 (plant U-box 8)

HSP 1 Score: 66.2 bits (160), Expect = 4.1e-11
Identity = 76/280 (27.14%), Postives = 133/280 (47.50%), Query Frame = 0


Query: 24  ITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLLAQVDGSIPILIALSKSSSSTVQS 83
           I+  V+ + S+A  ++  +L  LV +T+     R  + +  G++   +    S +  +Q 
Sbjct: 98  ISTLVSQSSSNASKLE--SLTRLVRLTKRDSSIRRKVTE-SGAVRAALDCVDSCNQVLQE 157

Query: 84  LSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSPETVKLASSLICSLAMLDKNKAKF 143
            SLS+L NLSL +D K  L +   I  + T++ +GSP+   +A++L+ SLA+++ NKA  
Sbjct: 158 KSLSLLLNLSLEDDNKVGLVADGVIRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATI 217

Query: 144 G-VAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGNCTVAVRSGAISVLVDVVESTSG 203
           G     I  LV  L V +         +L  L  F  N    V  G++ +LV+  +S   
Sbjct: 218 GSYPDAISALVSLLRVGNDRERKESATALYALCSFPDNRKRVVDCGSVPILVEAADSG-- 277

Query: 204 EDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVLKGRCMLSKEGATEILLRLFDES 263
                 A+ VLGLL +   G   + K+   V  +VNVL+   +   + +  IL  L   S
Sbjct: 278 ---LERAVEVLGLLVKCRGGREEMSKVSGFVEVLVNVLRNGNLKGIQYSLFILNCLCCCS 337

Query: 264 EGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNKIM 303
            G + D ++    + +        S K R  AT+L++ ++
Sbjct: 338 -GEIVDEVKREGVVEICFGFEDNESEKIRRNATILVHTLL 368

[Close]

BLAST of Carg00441 vs. Swiss-Prot
Match: sp|O81902|PUB8_ARATH (U-box domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=PUB8 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.4e-10
Identity = 76/280 (27.14%), Postives = 133/280 (47.50%), Query Frame = 0


Query: 24  ITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLLAQVDGSIPILIALSKSSSSTVQS 83
           I+  V+ + S+A  ++  +L  LV +T+     R  + +  G++   +    S +  +Q 
Sbjct: 98  ISTLVSQSSSNASKLE--SLTRLVRLTKRDSSIRRKVTE-SGAVRAALDCVDSCNQVLQE 157

Query: 84  LSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSPETVKLASSLICSLAMLDKNKAKF 143
            SLS+L NLSL +D K  L +   I  + T++ +GSP+   +A++L+ SLA+++ NKA  
Sbjct: 158 KSLSLLLNLSLEDDNKVGLVADGVIRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATI 217

Query: 144 G-VAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGNCTVAVRSGAISVLVDVVESTSG 203
           G     I  LV  L V +         +L  L  F  N    V  G++ +LV+  +S   
Sbjct: 218 GSYPDAISALVSLLRVGNDRERKESATALYALCSFPDNRKRVVDCGSVPILVEAADSG-- 277

Query: 204 EDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVLKGRCMLSKEGATEILLRLFDES 263
                 A+ VLGLL +   G   + K+   V  +VNVL+   +   + +  IL  L   S
Sbjct: 278 ---LERAVEVLGLLVKCRGGREEMSKVSGFVEVLVNVLRNGNLKGIQYSLFILNCLCCCS 337

Query: 264 EGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNKIM 303
            G + D ++    + +        S K R  AT+L++ ++
Sbjct: 338 -GEIVDEVKREGVVEICFGFEDNESEKIRRNATILVHTLL 368

[Close]

BLAST of Carg00441 vs. TrEMBL
Match: tr|A0A0A0LGP7|A0A0A0LGP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878830 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 3.4e-145
Identity = 280/319 (87.77%), Postives = 300/319 (94.04%), Query Frame = 0


Query: 1   MSVASFQSSSSMRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLL 60
           MSVASFQSSSSMRSMSVATAHK IT+C+A ARSDAH+VQEKAL++LV ITQVSPL+RNLL
Sbjct: 1   MSVASFQSSSSMRSMSVATAHKTITECMAGARSDAHEVQEKALQNLVTITQVSPLHRNLL 60

Query: 61  AQVDGSIPILIALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSP 120
            QVDGSI  LI LSKSSSST+QSLSLSILFNLSLN+DMKKLLASMETIYHLNTLISLGSP
Sbjct: 61  VQVDGSISTLIGLSKSSSSTIQSLSLSILFNLSLNHDMKKLLASMETIYHLNTLISLGSP 120

Query: 121 ETVKLASSLICSLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGN 180
           +TVKL+SSLICSLAMLDKNKAKFGVAGTIQLLVRAL VP++PAAHHLLCSLAELGQFHGN
Sbjct: 121 DTVKLSSSLICSLAMLDKNKAKFGVAGTIQLLVRALKVPNIPAAHHLLCSLAELGQFHGN 180

Query: 181 CTVAVRSGAISVLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVL 240
           CTVAVRSGAI VL+ VVESTSGEDLAGTALVVLGLLARFEEGLRALIK DRIV SMVNVL
Sbjct: 181 CTVAVRSGAIQVLISVVESTSGEDLAGTALVVLGLLARFEEGLRALIKTDRIVISMVNVL 240

Query: 241 KGRCMLSKEGATEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNK 300
           KGRCMLSKEGATEILLRLFDESEGCL DA + PEF GV+ADLSVRGS KARERA+LLMNK
Sbjct: 241 KGRCMLSKEGATEILLRLFDESEGCLSDASKLPEFFGVIADLSVRGSAKARERASLLMNK 300

Query: 301 IMNNDLETYSNADSVYSPW 320
           IMN+D ++YSN+DSVYS W
Sbjct: 301 IMNSDFDSYSNSDSVYSQW 319

[Close]

BLAST of Carg00441 vs. TrEMBL
Match: tr|A0A1S3CR56|A0A1S3CR56_CUCME (U-box domain-containing protein 8-like OS=Cucumis melo OX=3656 GN=LOC103503809 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 9.6e-140
Identity = 270/308 (87.66%), Postives = 287/308 (93.18%), Query Frame = 0


Query: 12  MRSMSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLLAQVDGSIPILI 71
           MRSMSVATAHK IT+C+A ARSDAH+VQEKAL++LV +TQVSPL+RNLL QVDGSI ILI
Sbjct: 1   MRSMSVATAHKTITECIAGARSDAHEVQEKALQNLVTVTQVSPLHRNLLVQVDGSISILI 60

Query: 72  ALSKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLISLGSPETVKLASSLIC 131
            LSKSS STVQSLSLSILFNLSLN+DMKKLLASME IYHLNTLISLGSPETVKL++SLIC
Sbjct: 61  DLSKSSFSTVQSLSLSILFNLSLNHDMKKLLASMENIYHLNTLISLGSPETVKLSASLIC 120

Query: 132 SLAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGNCTVAVRSGAIS 191
           SLAMLDKNKAKFGVAGTIQLLVRAL VP++PAAHHLLCSLAELGQFHGNCTVAVRSGAI 
Sbjct: 121 SLAMLDKNKAKFGVAGTIQLLVRALKVPNIPAAHHLLCSLAELGQFHGNCTVAVRSGAIQ 180

Query: 192 VLVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVLKGRCMLSKEGA 251
           VL+ VVES SGEDLAGTALVVLGLLARFEEGLRALIK DRIV SMVNVLKGRCMLSKEGA
Sbjct: 181 VLIGVVESASGEDLAGTALVVLGLLARFEEGLRALIKTDRIVISMVNVLKGRCMLSKEGA 240

Query: 252 TEILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNKIMNNDLETYSN 311
           TEILLRLFDESE CL DAL+ PEF GVVADLSVRGS KARERA+LLMNKIMN+D +TYSN
Sbjct: 241 TEILLRLFDESEDCLSDALKLPEFFGVVADLSVRGSPKARERASLLMNKIMNSDFDTYSN 300

Query: 312 ADSVYSPW 320
           ADSVYS W
Sbjct: 301 ADSVYSQW 308

[Close]

BLAST of Carg00441 vs. TrEMBL
Match: tr|F6H3U4|F6H3U4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g05110 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.5e-100
Identity = 202/306 (66.01%), Postives = 252/306 (82.35%), Query Frame = 0


Query: 15  MSVATAHKNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLLAQVDGSIPILIALS 74
           MS A   + IT+C++ A+SD+ +VQ+KAL+ L  IT+VSP  RNLLAQ DG+IP L++LS
Sbjct: 1   MSAARIRETITECLSKAQSDSPEVQQKALQTLAYITKVSPQNRNLLAQSDGAIPALLSLS 60

Query: 75  KSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLI-SLGSPETVKLASSLICSL 134
           + SS+T+Q+LSLSILF +SLN ++K+ LA METIYHLN++I SL SPE+ +LASSLICSL
Sbjct: 61  R-SSTTLQALSLSILFYISLNPNLKQSLAEMETIYHLNSIILSLSSPESSRLASSLICSL 120

Query: 135 AMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGNCTVAVRSGAISVL 194
           AMLDKNKAKFGVAGTIQ LV A++ P  PAAHHLL SLAEL +FHGNCT+AVRSGA+ VL
Sbjct: 121 AMLDKNKAKFGVAGTIQSLVTAVSDPGCPAAHHLLSSLAELVRFHGNCTLAVRSGAVPVL 180

Query: 195 VDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVLKGRCMLSKEGATE 254
           + V +S + EDLAGT+L +LGLLARFEEGL AL K D+IV SMV+VLKGRCMLSKEGA E
Sbjct: 181 IQVAQSNNSEDLAGTSLAILGLLARFEEGLNALRKTDQIVNSMVDVLKGRCMLSKEGAAE 240

Query: 255 ILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNKIMNNDLETYSNAD 314
           ILLRLFDESEGC+RDALR PEF  V+ADLS+RGS +ARE+ + LM K+M  D++ Y + +
Sbjct: 241 ILLRLFDESEGCVRDALRLPEFPTVLADLSIRGSARAREKVSSLMKKLMEADMDAYGDGN 300

Query: 315 SVYSPW 320
           S++  W
Sbjct: 301 SIFLKW 305

[Close]

BLAST of Carg00441 vs. TrEMBL
Match: tr|M5XEK4|M5XEK4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009071mg PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 3.7e-99
Identity = 199/307 (64.82%), Postives = 252/307 (82.08%), Query Frame = 0


Query: 15  MSVATAHKNITQCVADAR-SDAHDVQEKALKDLVAITQVSPLYRNLLAQVDGSIPILIAL 74
           MS A   + I QC+++A+ SD H+ ++KAL+ LV+IT+VSPL RNLLA  +G+IP L+ L
Sbjct: 1   MSSARVREVIRQCLSEAQSSDFHEAEQKALQTLVSITKVSPLNRNLLALTEGAIPALLTL 60

Query: 75  SKSSSSTVQSLSLSILFNLSLNNDMKKLLASMETIYHLNTLI-SLGSPETVKLASSLICS 134
           SKSSS  +Q LSLSILFNLSLN D+K+ LA +ETI+HLN++I +L S E+ ++ASSL+CS
Sbjct: 61  SKSSSDIIQILSLSILFNLSLNPDLKQSLADIETIHHLNSIIATLNSEESGRVASSLVCS 120

Query: 135 LAMLDKNKAKFGVAGTIQLLVRALTVPSVPAAHHLLCSLAELGQFHGNCTVAVRSGAISV 194
           LAMLDKNKAKFGVAGTIQLLV+A+  P  PAAHHLL SLAEL +FHGNCT+AVR GA+  
Sbjct: 121 LAMLDKNKAKFGVAGTIQLLVKAIAGPRCPAAHHLLSSLAELVRFHGNCTLAVREGAVQA 180

Query: 195 LVDVVESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVLKGRCMLSKEGAT 254
           L+ VVEST GEDLAGT+L+VL LLARF+EGL AL K D+IV  MV+VLKGRCMLSKEGA 
Sbjct: 181 LIQVVESTDGEDLAGTSLLVLALLARFDEGLNALRKTDQIVSKMVDVLKGRCMLSKEGAA 240

Query: 255 EILLRLFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNKIMNNDLETYSNA 314
           EILL LF+ESEGC+RDALR P+F  ++AD+SVRGS +ARE+A LL+ KIM+ DL++Y + 
Sbjct: 241 EILLLLFEESEGCVRDALRLPDFSTLIADISVRGSARAREKAALLLKKIMDADLDSYVDG 300

Query: 315 DSVYSPW 320
           + ++S W
Sbjct: 301 NPMFSQW 307

[Close]

BLAST of Carg00441 vs. TrEMBL
Match: tr|A0A2P5DUI0|A0A2P5DUI0_9ROSA (Coatomer beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_241290 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-95
Identity = 197/301 (65.45%), Postives = 242/301 (80.40%), Query Frame = 0


Query: 22  KNITQCVADARSDAHDVQEKALKDLVAITQVSPLYRNLLAQVDGSIPILIALSKSSSSTV 81
           + IT C+++A+S++H+ QE+AL+ L +IT+VSP  R+LLAQ +G+IP  + LSKSSSS +
Sbjct: 7   EKITLCLSEAQSESHETQERALRTLASITKVSPQNRSLLAQSEGAIPAFLTLSKSSSSII 66

Query: 82  QSLSLSILFNLSLNNDMKKLLASMETIYHLNTLIS--LGSPETVKLASSLICSLAMLDKN 141
           Q LSL+ILFNLSLN D+KK LA METI HLN++I+    SPE+ +LASSL+CSLAMLDKN
Sbjct: 67  QVLSLAILFNLSLNPDLKKSLADMETISHLNSMIASPKTSPESGRLASSLVCSLAMLDKN 126

Query: 142 KAKFGVAGTIQLLVRALTVPSVP--AAHHLLCSLAELGQFHGNCTVAVRSGAISVLVDVV 201
           KAKFGVAGTIQLL+ A++ P     A HHLL SLAEL QFHGN T+AVRSGAI  L+ VV
Sbjct: 127 KAKFGVAGTIQLLIEAISRPDYRGLATHHLLSSLAELVQFHGNSTLAVRSGAIPALIQVV 186

Query: 202 ESTSGEDLAGTALVVLGLLARFEEGLRALIKIDRIVYSMVNVLKGRCMLSKEGATEILLR 261
           EST GEDLAGT+L VL LLARF+EGL  L K + IV  MVNVLKGRCMLSKEGA EIL+R
Sbjct: 187 ESTDGEDLAGTSLAVLCLLARFDEGLNGLRKTEGIVSRMVNVLKGRCMLSKEGAAEILIR 246

Query: 262 LFDESEGCLRDALRFPEFLGVVADLSVRGSTKARERATLLMNKIMNNDLETYSNADSVYS 319
           LFDESEGC+RDA+R PEF  V+ADLSVRGS +ARE+A+LLM K+M  DL++Y +  +V  
Sbjct: 247 LFDESEGCVRDAMRLPEFSTVLADLSVRGSARAREKASLLMKKMMEADLDSYVDGSTVLF 306

The following BLAST results are available for this feature:

BLAST of Carg00441 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982428.1	2.9e-164	99.06	U-box domain-containing protein 1-like [Cucurbita maxima]	[more]
XP_023524300.1	6.5e-164	99.38	U-box domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >XP_02352430...	[more]
XP_022940416.1	8.4e-164	99.06	U-box domain-containing protein 1-like [Cucurbita moschata] >XP_022940417.1 U-bo...	[more]
XP_004136472.1	5.1e-145	87.77	PREDICTED: U-box domain-containing protein 8-like [Cucumis sativus] >KGN60114.1 ...	[more]
XP_022139603.1	2.9e-140	85.94	U-box domain-containing protein 1-like [Momordica charantia]	[more]

BLAST of Carg00441 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21350.1	4.1e-11	27.14	plant U-box 8	[more]

BLAST of Carg00441 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81902\|PUB8_ARATH	7.4e-10	27.14	U-box domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=PUB8 PE=2 S...	[more]

BLAST of Carg00441 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGP7\|A0A0A0LGP7_CUCSA	3.4e-145	87.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878830 PE=4 SV=1	[more]
tr\|A0A1S3CR56\|A0A1S3CR56_CUCME	9.6e-140	87.66	U-box domain-containing protein 8-like OS=Cucumis melo OX=3656 GN=LOC103503809 P...	[more]
tr\|F6H3U4\|F6H3U4_VITVI	1.5e-100	66.01	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g05110 PE=4 SV=...	[more]
tr\|M5XEK4\|M5XEK4_PRUPE	3.7e-99	64.82	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009071mg PE=4 SV=1	[more]
tr\|A0A2P5DUI0\|A0A2P5DUI0_9ROSA	2.5e-95	65.45	Coatomer beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_241290 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00441-RA	Carg00441-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 4..313 e-value: 8.9E-23 score: 82.6
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 15..319
None	No IPR available	PANTHER	PTHR23315:SF149	SUBFAMILY NOT NAMED	coord: 15..319
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 29..303

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00441	Cla020956	Watermelon (97103) v1	carwmB0670
Carg00441	Csa3G878830	Cucumber (Chinese Long) v2	carcuB0686
Carg00441	MELO3C003683	Melon (DHL92) v3.5.1	carmeB0667
Carg00441	ClCG05G017080	Watermelon (Charleston Gray)	carwcgB0650
Carg00441	CSPI03G44100	Wild cucumber (PI 183967)	carcpiB0698
Carg00441	Cucsa.310480	Cucumber (Gy14) v1	carcgyB0754
Carg00441	CmaCh01G014940	Cucurbita maxima (Rimu)	carcmaB0947
Carg00441	CmoCh01G015490	Cucurbita moschata (Rifu)	carcmoB0922
Carg00441	Lsi04G021460	Bottle gourd (USVL1VR-Ls)	carlsiB611
Carg00441	Cp4.1LG02g04110	Cucurbita pepo (Zucchini)	carcpeB0943
Carg00441	MELO3C003683.2	Melon (DHL92) v3.6.1	carmedB0679
Carg00441	CsaV3_3G046560	Cucumber (Chinese Long) v3	carcucB0700
Carg00441	Cla97C05G098190	Watermelon (97103) v2	carwmbB0699

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00441	Wax gourd	carwgoB0790
Carg00441	Silver-seed gourd	carcarB165
Carg00441	Silver-seed gourd	carcarB553
Carg00441	Silver-seed gourd	carcarB555
Carg00441	Silver-seed gourd	carcarB572
Carg00441	Cucumber (Gy14) v2	carcgybB0656
Carg00441	Cucumber (Gy14) v2	carcgybB0661
Carg00441	Cucumber (Gy14) v1	carcgyB0752
Carg00441	Cucurbita maxima (Rimu)	carcmaB0933
Carg00441	Cucurbita maxima (Rimu)	carcmaB0935
Carg00441	Cucurbita maxima (Rimu)	carcmaB0938
Carg00441	Cucurbita moschata (Rifu)	carcmoB0907
Carg00441	Cucurbita moschata (Rifu)	carcmoB0909
Carg00441	Cucurbita moschata (Rifu)	carcmoB0912
Carg00441	Cucurbita pepo (Zucchini)	carcpeB0948
Carg00441	Cucurbita pepo (Zucchini)	carcpeB0950
Carg00441	Wild cucumber (PI 183967)	carcpiB0692
Carg00441	Wild cucumber (PI 183967)	carcpiB0693
Carg00441	Cucumber (Chinese Long) v2	carcuB0681
Carg00441	Cucumber (Chinese Long) v3	carcucB0694
Carg00441	Cucumber (Chinese Long) v3	carcucB0695
Carg00441	Bottle gourd (USVL1VR-Ls)	carlsiB606
Carg00441	Melon (DHL92) v3.6.1	carmedB0676
Carg00441	Watermelon (Charleston Gray)	carwcgB0649
Carg00441	Watermelon (Charleston Gray)	carwcgB0652
Carg00441	Watermelon (97103) v1	carwmB0661
Carg00441	Watermelon (97103) v1	carwmB0669
Carg00441	Watermelon (97103) v2	carwmbB0697
Carg00441	Watermelon (97103) v2	carwmbB0702