Carg00283 (gene) Silver-seed gourd

Overview
NameCarg00283
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA-binding protein CP31B, chloroplastic
LocationCucurbita_argyrosperma_scaffold_001 : 1531315 .. 1533545 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAGTTCATGTTCATCTGTTATATATCTCAGTAGCTTAGTATTTCCTTTCGAACTCTTAGATTGAATGACATTGATGAACTATGATTAATTCATTATGAAGTTTTCTGGAAATGGTTTGTCTGTGGTTATTTACTGTTAATGCTCGAGGAGGAAGAAACTGTATTACTAATATGAAATTGTTGATTAAGGAATGACTTGTTCTTGATGAAGCTTCAAATCTCTTTCTCTTGTGTTAGTTCCTTTGTAGATATTGTGTACACAACAATGCCTAAAGAGCTAATTATGCGTTTAATATACTTATCTGAGGAATTTGTAATGGTATCACGTCTTAGTCCAATCTGTATTATCCAGACTGATAGATGCATTAGTGCTGCCCCCTCCCTCCCTTTTGATCACATAAATTTACTTGTGTTCTTGCAATATTCCCCAGTGAAGTAAGTGAAAATGGTGGCTACAAAAGTGTATGTTGGAGGCATTCCATATTATTCAACTGAGGACGATATTTGTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAAGTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTGATTTTCAAGGTATGGTAATCTGATTAATATGAACTTTCATTCCTCTTAGTAGCTAAGATCAATCAAGTCTTGAAGATGTTTCATGATTTATACTTTGTTCTAAGATCATAGGCTTACTGAGAGTGAATGAGTGCAAGTGTTGGGTCCTTTTTGAAGTTAATTGAGGTTAGAAAATGCGGATTTATAAGGCTTATTATGACACTAAGATTTCCGACCAAGACGTATATGAACATTATTAAAGAATATTCATATGAGCATACAATTAGCCTTCTCGCACTAAATAGTATATAGCATATCATCTTGTAAGTCTGCTTCATTTGGCTTTTTAAGCTAGAATCAGTCAAGATTCCATCAGTGTTGAAAAAGTATCAAATATTGCTGGTGTGTTCTTCTATGTAATAGAAATAGTTACCAGAGCTGTGTTGGGGCTGGTGTGGGGATTACAATTTTACTGAATTTTGGATTTCTGGAGGTCAGATTTCTTTAGTTTTCGAGTTACCTTACCACTGTTTACCATTTGCAGACCGAAGCTGCAGCAAAACGAGCACTAGCCATGGATGGAGCTGACATGTGAGAATATGAACAATTTGATATCATGTCGCCATTATACTTTCTGTCCTTTTCCACCATCTTATTACAAATTATTTCTTATGTAGGGGGGGGGCCTCTTCCTTAAAGTACAGCCCTACAAGGGAACTCGAACGAGTAAAGCAGTCGATTCCTCTTTGGGAATCGTGGAAGGCTACAACAGAATCTATCTGGGGAATCTGTCGTGGGATGTAACAGAGGATGATCTGAAGAAACTCTTCTCTCACTGTAACACTGCATTGATACGTTTTGGCATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAGGCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAAAACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAACTGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG

mRNA sequence

ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGACGATATTTGTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAAGTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTGATTTTCAAGGGGGGGGGCCTCTTCCTTAAAGTACAGCCCTACAAGGGAACTCGAACGAGTAAAGCAGTCGATTCCTCTTTGGGAATCGTGGAAGGCTACAACAGAATCTATCTGGGGAATCTGTCGTGGGATGTAACAGAGGATGATCTGAAGAAACTCTTCTCTCACTGTAACACTGCATTGATACGTTTTGGCATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAGGCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAAAACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAACTGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG

Coding sequence (CDS)

ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGACGATATTTGTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAAGTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTGATTTTCAAGGGGGGGGGCCTCTTCCTTAAAGTACAGCCCTACAAGGGAACTCGAACGAGTAAAGCAGTCGATTCCTCTTTGGGAATCGTGGAAGGCTACAACAGAATCTATCTGGGGAATCTGTCGTGGGATGTAACAGAGGATGATCTGAAGAAACTCTTCTCTCACTGTAACACTGCATTGATACGTTTTGGCATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAGGCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAAAACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAACTGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG

Protein sequence

MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEKQGDDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKGGGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS
Homology
[Close]
BLAST of Carg00283 vs. NCBI nr
Match: XP_022139342.1 (protein gar2 [Momordica charantia])

HSP 1 Score: 328.6 bits (841), Expect = 2.6e-86
Identity = 173/248 (69.76%), Postives = 184/248 (74.19%), Query Frame = 0 

Query: 127 CSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYK 186
           CSFFESCGTITEVDCMKFPESGKFRGIAIL FK                GGLFLKVQPYK
Sbjct: 198 CSFFESCGTITEVDCMKFPESGKFRGIAILSFKTEAAAKRALAMDGADMGGLFLKVQPYK 257

Query: 187 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFR 246
           GTR +KAVD S GI+EGYNRIYLGNLSWDVTEDDLKKLFS+C  A IRFGMDKE TGEFR
Sbjct: 258 GTRLNKAVDFSPGIMEGYNRIYLGNLSWDVTEDDLKKLFSNCKIASIRFGMDKE-TGEFR 317

Query: 247 GYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXX 306
           GYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPKKGTERG G A             
Sbjct: 318 GYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKKGTERGAGGA---------AAAE 377

Query: 307 TQAKP----------------VPEMKEAETGLSSISGKIRRRTCYECGEKGHLSSNCPKK 344
           T +KP                     EA++GLSS+SGKIRRRTCYECGEKGHLSSNCPKK
Sbjct: 378 THSKPXXXXXXXXXXXXXXXXXXXXXEADSGLSSVSGKIRRRTCYECGEKGHLSSNCPKK 435

[Close]
BLAST of Carg00283 vs. NCBI nr
Match: XP_023517053.1 (protein gar2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 2.9e-85
Identity = 176/247 (71.26%), Postives = 189/247 (76.52%), Query Frame = 0 

Query: 127 CSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYK 186
           CSFFESCGTITEVDCM FPESGKFRGIAIL FK                GGLFLKVQPYK
Sbjct: 208 CSFFESCGTITEVDCMMFPESGKFRGIAILSFKTEAAAKRALAMDGADMGGLFLKVQPYK 267

Query: 187 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFR 246
           GTR++KAVD S GIVEGYNRIYLGNLSWDVTEDDLKKLF++C  A IRFGMDKE TGEFR
Sbjct: 268 GTRSNKAVDFSPGIVEGYNRIYLGNLSWDVTEDDLKKLFANCQIASIRFGMDKE-TGEFR 327

Query: 247 GYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTER---------------GGG 306
           GYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+GT R                  
Sbjct: 328 GYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKQGTARXXXXXXXXXXXXXXXXXX 387

Query: 307 EAXXXXXXXXXXXXXTQAKPVPEMKEAETGLSSISGKIRRRTCYECGEKGHLSSNCPKKL 344
             XXXXXXX      T  KPVPEM  A++GLS++SGKIRRRTCYECGEKGHLSSNCP K 
Sbjct: 388 XXXXXXXXXTLAVAETLPKPVPEMTVADSGLSTVSGKIRRRTCYECGEKGHLSSNCPTKQ 447

[Close]
BLAST of Carg00283 vs. NCBI nr
Match: XP_022943192.1 (protein gar2 [Cucurbita moschata])

HSP 1 Score: 323.9 bits (829), Expect = 6.4e-85
Identity = 181/250 (72.40%), Postives = 194/250 (77.60%), Query Frame = 0 

Query: 127 CSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYK 186
           CSFFESCGTITEVDCM FPESGKFRGIAIL FK                GGLFLKVQPYK
Sbjct: 202 CSFFESCGTITEVDCMMFPESGKFRGIAILSFKTEAAAKRALAMDGADMGGLFLKVQPYK 261

Query: 187 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFR 246
           GTR++KAVD S GIVEGYNRIYLGNLSWDVTEDDLKKLF++C  A IRFGMDKE TGEFR
Sbjct: 262 GTRSNKAVDFSPGIVEGYNRIYLGNLSWDVTEDDLKKLFANCKIASIRFGMDKE-TGEFR 321

Query: 247 GYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTER------------------ 306
           GYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+GT R                  
Sbjct: 322 GYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKQGTARXXXXXXXXXXXXXXXXXX 381

Query: 307 GGGEAXXXXXXXXXXXXXTQAKPVPEMKEAETGLSSISGKIRRRTCYECGEKGHLSSNCP 344
                XXXXXXXXXXXX T  KPVPEM  A++GLS++SGKIRRRTCYECGEKGHLSSNCP
Sbjct: 382 XXXXXXXXXXXXXXXXXETLPKPVPEMTVADSGLSTVSGKIRRRTCYECGEKGHLSSNCP 441

[Close]
BLAST of Carg00283 vs. NCBI nr
Match: XP_022986056.1 (protein gar2-like [Cucurbita maxima])

HSP 1 Score: 323.6 bits (828), Expect = 8.4e-85
Identity = 181/249 (72.69%), Postives = 193/249 (77.51%), Query Frame = 0 

Query: 127 CSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYK 186
           CSFFESCGTITEVDCM FPESGKFRGIAIL FK                GGLFLKVQPYK
Sbjct: 206 CSFFESCGTITEVDCMMFPESGKFRGIAILSFKTEAAAKRALAMDGADMGGLFLKVQPYK 265

Query: 187 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFR 246
           GTR++KAVD S GIVEGYNRIYLGNLSWDVTEDDLKKLF+ C  A IRFGMDKE TGEFR
Sbjct: 266 GTRSNKAVDFSPGIVEGYNRIYLGNLSWDVTEDDLKKLFASCKIASIRFGMDKE-TGEFR 325

Query: 247 GYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTER-----------------G 306
           GYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+GT R                  
Sbjct: 326 GYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKQGTARXXXXXXXXXXXXXXXXXX 385

Query: 307 GGEAXXXXXXXXXXXXXTQAKPVPEMKEAETGLSSISGKIRRRTCYECGEKGHLSSNCPK 344
               XXXXXXXXXXXX T  KPVPEM  A++GLS++SGKIRRRTCYECGEKGHLSSNCP 
Sbjct: 386 XXXXXXXXXXXXXXXXETLPKPVPEMAVADSGLSTVSGKIRRRTCYECGEKGHLSSNCPT 445

[Close]
BLAST of Carg00283 vs. NCBI nr
Match: XP_011654941.1 (PREDICTED: protein gar2 isoform X1 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 2.4e-84
Identity = 162/233 (69.53%), Postives = 178/233 (76.39%), Query Frame = 0 

Query: 127 CSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYK 186
           CSFFESCGTITE+DCMKFPESGKFRGIAIL FK                GGLFLKVQPYK
Sbjct: 205 CSFFESCGTITEIDCMKFPESGKFRGIAILSFKTEAAAKRALACDGADMGGLFLKVQPYK 264

Query: 187 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFR 246
           GTR ++A D S G+VEGYNRIY+GNLSWDVTEDDLKKLF +C  A IRFGMDKE TGEFR
Sbjct: 265 GTRKNRAADFSPGLVEGYNRIYIGNLSWDVTEDDLKKLFVNCKIASIRFGMDKE-TGEFR 324

Query: 247 GYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXX 306
           GYAHVDF+D + LKTALKLDQ+ IHGRPVK+RCAVPKKGTE GGG A             
Sbjct: 325 GYAHVDFSDGISLKTALKLDQKIIHGRPVKIRCAVPKKGTENGGGGA----VAGAETHPE 384

Query: 307 TQAKPVPEMKEAETG-LSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS 344
              +P+PE KEA    +S++SGKIRRRTCYECGEKGHLSSNCP K LADS+ S
Sbjct: 385 MNPEPIPETKEAAVSVVSAVSGKIRRRTCYECGEKGHLSSNCPNKQLADSVTS 432

[Close]
BLAST of Carg00283 vs. TAIR10
Match: AT3G55340.1 (phragmoplastin interacting protein 1)

HSP 1 Score: 176.0 bits (445), Expect = 3.9e-44
Identity = 103/238 (43.28%), Postives = 131/238 (55.04%), Query Frame = 0 

Query: 128 SFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYKG 187
           S+F SCG I +VDC   PE G F GIA + F                 G  +L +Q Y  
Sbjct: 179 SYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYLTIQQYVK 238

Query: 188 TRT----SKAVDSSLG--IVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKET 247
           T T     +   S     +V+GYNR+Y+GNL+WD TE D++KLFS C    +R G +KE 
Sbjct: 239 TTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKE- 298

Query: 248 TGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAV-PKKGTERGGGEAXXXXXXX 307
           TGEF+GYAHVDF DSV +  ALKLDQ+ I GRPVK+ CA+  +  T+   GE        
Sbjct: 299 TGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKICCALKDRPATDHTPGET-NNAGSY 358

Query: 308 XXXXXXTQAKPVPEM---KEAETG----LSSISGKIRRRTCYECGEKGHLSSNCPKKL 337
                   A PVP +    E + G     +  S K++RR CYECGEKGHLS+ CP KL
Sbjct: 359 NMEDTYAAADPVPALAGRSEVDDGNYFATTVSSSKVKRRVCYECGEKGHLSTACPIKL 414

[Close]
BLAST of Carg00283 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 52.4 bits (124), Expect = 6.5e-07
Identity = 33/110 (30.00%), Postives = 59/110 (53.64%), Query Frame = 0 

Query: 173 TRTSKAVDSSLGIVEGY-----NRIYLGNLSWDVTEDDLKKLFSHCNTAL-IRFGMDKET 232
           ++TS  V +S  +++       ++I++G +S+   E  L++ FS     +  +  +D+E 
Sbjct: 12  SQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRE- 71

Query: 233 TGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGG 277
           TG  RG+A V F  +     A++LD + +HGR ++V  A     TERG G
Sbjct: 72  TGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYA-----TERGSG 115

[Close]
BLAST of Carg00283 vs. TAIR10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 8.5e-07
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 0 

Query: 187 EGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKT 246
           E  +++++GNLSW VT + L   F  C   +    +    TG  RGY  V ++    ++T
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233

Query: 247 ALK-LDQETIHGRPVKVRCAVPKK 270
           AL+ LD   + GR ++V  A  KK
Sbjct: 234 ALESLDGFELEGRAIRVNLAQGKK 257

[Close]
BLAST of Carg00283 vs. TAIR10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 40/144 (27.78%), Postives = 58/144 (40.28%), Query Frame = 0 

Query: 190 NRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALK 249
           +RI++G LSWDVTE  L+  F           M    TG  RG+  + F D      A+K
Sbjct: 12  SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71

Query: 250 LDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXXTQAKPVPEMKEAETGLSS 309
                +HGR +  +     K   + GGE                   V ++K+   G  S
Sbjct: 72  ----HMHGRELGNKVISVNKAEPKVGGE------------------DVDQLKKG--GGYS 131

Query: 310 ISGKIRRRTCYECGEKGHLSSNCP 334
             GK     C++C   GH + +CP
Sbjct: 132 SRGKGTEDECFKCRRPGHWARDCP 131

[Close]
BLAST of Carg00283 vs. TAIR10
Match: AT4G24770.1 (31-kDa RNA binding protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 0 

Query: 191 RIYLGNLSWDVTEDDLKKLFS-HCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALK 250
           R+Y+GNL WDV    L++LFS H      R   D+E TG  RG+  V  +D   L  A+ 
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRE-TGRSRGFGFVTMSDVDELNEAIS 304

Query: 251 -LDQETIHGRPVKVRCA---VPKKG 271
            LD + + GR ++V  A    P++G
Sbjct: 305 ALDGQNLEGRAIRVNVAEERPPRRG 328

[Close]
BLAST of Carg00283 vs. Swiss-Prot
Match: sp|P41891|GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gar2 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 32/104 (30.77%), Postives = 54/104 (51.92%), Query Frame = 0 

Query: 168 QPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHC-NTALIRFGMDKET 227
           QPY   R     D    + E  + +++GNLS++ TEDDL   F  C +   IR   D + 
Sbjct: 347 QPYAQQRAGNFGDQ---LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQ- 406

Query: 228 TGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKG 271
           +G  +G+ +V F+D    K  ++++   I GRP ++  + P+ G
Sbjct: 407 SGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTG 446

[Close]
BLAST of Carg00283 vs. Swiss-Prot
Match: sp|Q7XTT4|NUCL2_ORYSJ (Nucleolin 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0620700 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 6.2e-07
Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 0 

Query: 172 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTAL-IRFGMDKETTGEF 231
           G    K   S+     G   +++GNL ++V ++ +K+ F      + IRF   ++  G F
Sbjct: 431 GQEEPKTPASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFED--GNF 490

Query: 232 RGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGG 277
           RG+ HV+FA +   K AL+L    + GRPV++  A  +     G G
Sbjct: 491 RGFGHVEFATAEAAKKALELAGHDLMGRPVRLDLARERGAYTPGSG 534

[Close]
BLAST of Carg00283 vs. Swiss-Prot
Match: sp|Q9WX37|RBPE_NOSS1 (Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbpE PE=3 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 8.2e-07
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 192 IYLGNLSWDVTEDDLKKLFS-HCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALK- 251
           IY+GNLS+ VT+DDL K+FS + +   ++   D+E TG  RG+  V+   S     A++ 
Sbjct: 3   IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRE-TGRVRGFGFVEMESSAAEDAAIQA 62

Query: 252 LDQETIHGRPVKVRCAVPK--KGTERGGG 277
           LD     GR +KV  A P+  KG   GGG
Sbjct: 63  LDGAEWMGRVLKVNKARPREEKGARSGGG 90

[Close]
BLAST of Carg00283 vs. Swiss-Prot
Match: sp|Q8BGD9|IF4B_MOUSE (Eukaryotic translation initiation factor 4B OS=Mus musculus OX=10090 GN=Eif4b PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-06
Identity = 24/73 (32.88%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 193 YLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQ 252
           +LGNL +DVTED +K  F   N + +R   +       +G+ + +F D   L +AL L++
Sbjct: 99  FLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSLNE 158

Query: 253 ETIHGRPVKVRCA 266
           E++  R ++V  A
Sbjct: 159 ESLGNRRIRVDVA 171

[Close]
BLAST of Carg00283 vs. Swiss-Prot
Match: sp|O14369|SCE3_SCHPO (Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sce3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-06
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 193 YLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQ 252
           ++GNLS+D+TE+DL   F    T+ IR  +D   T   RG+ +V+F  +  L  AL L  
Sbjct: 97  HVGNLSFDLTENDLGDFFGEGVTS-IRLVID-PLTERSRGFGYVEFETADTLSAALALSG 156

Query: 253 ETIHGRPVKVRCAVPKKGTER 274
           E + GRPV++  A P++   R
Sbjct: 157 EDLMGRPVRITVAEPRRSFAR 175

[Close]
BLAST of Carg00283 vs. TrEMBL
Match: tr|A0A0A0KLT8|A0A0A0KLT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.6e-84
Identity = 162/233 (69.53%), Postives = 178/233 (76.39%), Query Frame = 0 

Query: 127 CSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYK 186
           CSFFESCGTITE+DCMKFPESGKFRGIAIL FK                GGLFLKVQPYK
Sbjct: 255 CSFFESCGTITEIDCMKFPESGKFRGIAILSFKTEAAAKRALACDGADMGGLFLKVQPYK 314

Query: 187 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFR 246
           GTR ++A D S G+VEGYNRIY+GNLSWDVTEDDLKKLF +C  A IRFGMDKE TGEFR
Sbjct: 315 GTRKNRAADFSPGLVEGYNRIYIGNLSWDVTEDDLKKLFVNCKIASIRFGMDKE-TGEFR 374

Query: 247 GYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXX 306
           GYAHVDF+D + LKTALKLDQ+ IHGRPVK+RCAVPKKGTE GGG A             
Sbjct: 375 GYAHVDFSDGISLKTALKLDQKIIHGRPVKIRCAVPKKGTENGGGGA----VAGAETHPE 434

Query: 307 TQAKPVPEMKEAETG-LSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS 344
              +P+PE KEA    +S++SGKIRRRTCYECGEKGHLSSNCP K LADS+ S
Sbjct: 435 MNPEPIPETKEAAVSVVSAVSGKIRRRTCYECGEKGHLSSNCPNKQLADSVTS 482

[Close]
BLAST of Carg00283 vs. TrEMBL
Match: tr|A0A1S3CF29|A0A1S3CF29_CUCME (RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.0e-83
Identity = 165/235 (70.21%), Postives = 182/235 (77.45%), Query Frame = 0 

Query: 127 CSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYK 186
           CSFFESCGTITE+DCMKFPESGKFRGIAIL FK                GGLFLKVQPYK
Sbjct: 199 CSFFESCGTITEIDCMKFPESGKFRGIAILSFKTEAAAKRALACDGADMGGLFLKVQPYK 258

Query: 187 GTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFR 246
           GTR ++A D S G+VEGYNRIY+GNLSWDVTEDDLKKLFS+C    IRFGMDKE TGEFR
Sbjct: 259 GTRKNRAADFSPGLVEGYNRIYMGNLSWDVTEDDLKKLFSNCKIGSIRFGMDKE-TGEFR 318

Query: 247 GYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXX 306
           GYAHVDF+DS+ LKTALKLDQE IHGRPVK+RCAVPKKGTE+  G  XXXX         
Sbjct: 319 GYAHVDFSDSISLKTALKLDQEIIHGRPVKIRCAVPKKGTEK--GXXXXXXVAREEMHPE 378

Query: 307 TQAKPVPEMKE---AETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS 344
              +P+PE KE   AE+ ++S+SGKIRRRTCYECGEKGHLSSNCP K  ADS+ S
Sbjct: 379 MNLEPMPETKEAQAAESVVNSVSGKIRRRTCYECGEKGHLSSNCPNKQPADSVTS 430

[Close]
BLAST of Carg00283 vs. TrEMBL
Match: tr|A0A068TVG2|A0A068TVG2_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00029804001 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 134/228 (58.77%), Postives = 162/228 (71.05%), Query Frame = 0 

Query: 128 SFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYKG 187
           S+FE CGTITE+DCMKFPESGKFRGIAI+ FK                GGLFLK+QPYK 
Sbjct: 198 SYFEGCGTITEIDCMKFPESGKFRGIAIISFKTEAAARRALALDGSDMGGLFLKIQPYKS 257

Query: 188 TRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRG 247
            R +K  + +  IVEGYNRIY+GNLSWD+TEDDL+K FS CN + IRFG DKE TG+FRG
Sbjct: 258 ARVTKTSNFAPKIVEGYNRIYVGNLSWDITEDDLRKFFSVCNISSIRFGEDKE-TGDFRG 317

Query: 248 YAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXXT 307
           YAHVDF+DS+ L TALKLDQ+ + GRP+++ CAVPKKG+E                    
Sbjct: 318 YAHVDFSDSLSLNTALKLDQKIVCGRPIRISCAVPKKGSE-------------------D 377

Query: 308 QAKPVPEMKEA-ETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLAD 340
           + KP+PE  +A   G +++SGKIRRRTCYECGE+GHLSS+CPKK  AD
Sbjct: 378 KTKPLPENNQAVGDGATAVSGKIRRRTCYECGERGHLSSSCPKKQTAD 405

[Close]
BLAST of Carg00283 vs. TrEMBL
Match: tr|A0A2I4FY07|A0A2I4FY07_9ROSI (protein gar2 isoform X1 OS=Juglans regia OX=51240 GN=LOC109003035 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.4e-66
Identity = 137/231 (59.31%), Postives = 158/231 (68.40%), Query Frame = 0 

Query: 128 SFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYKG 187
           S+FE CGTITE+DCMKFPE+GKFRGI+I+ FK                GGL+LK+QPYK 
Sbjct: 208 SYFEGCGTITEIDCMKFPETGKFRGISIISFKTEAAAKRALALDGSDMGGLYLKIQPYKV 267

Query: 188 TRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRG 247
           TR +KA   S  IVEGYNRIY+GNL WDVTEDDL+KL S CN + IRFG DKE TGEFRG
Sbjct: 268 TRANKASHFSPEIVEGYNRIYVGNLPWDVTEDDLRKLLSDCNISSIRFGADKE-TGEFRG 327

Query: 248 YAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXXT 307
           YAHVDF+DS+ L  ALKLDQ+ + GRPVK+ CAVPKKG    G ++             T
Sbjct: 328 YAHVDFSDSMSLTMALKLDQQIVCGRPVKISCAVPKKG---AGADS-------------T 387

Query: 308 QAKPVPEMKEAE----TGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLAD 340
             +  P  +E E     G S+ SGKIRRRTCYECGEKGHLSS CPKK  AD
Sbjct: 388 DTRSAPARQETENLESAGSSATSGKIRRRTCYECGEKGHLSSACPKKQNAD 421

[Close]
BLAST of Carg00283 vs. TrEMBL
Match: tr|A0A2I4FY15|A0A2I4FY15_9ROSI (protein gar2 isoform X2 OS=Juglans regia OX=51240 GN=LOC109003035 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.4e-66
Identity = 137/231 (59.31%), Postives = 158/231 (68.40%), Query Frame = 0 

Query: 128 SFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFLKVQPYKG 187
           S+FE CGTITE+DCMKFPE+GKFRGI+I+ FK                GGL+LK+QPYK 
Sbjct: 207 SYFEGCGTITEIDCMKFPETGKFRGISIISFKTEAAAKRALALDGSDMGGLYLKIQPYKV 266

Query: 188 TRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRG 247
           TR +KA   S  IVEGYNRIY+GNL WDVTEDDL+KL S CN + IRFG DKE TGEFRG
Sbjct: 267 TRANKASHFSPEIVEGYNRIYVGNLPWDVTEDDLRKLLSDCNISSIRFGADKE-TGEFRG 326

Query: 248 YAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAXXXXXXXXXXXXXT 307
           YAHVDF+DS+ L  ALKLDQ+ + GRPVK+ CAVPKKG    G ++             T
Sbjct: 327 YAHVDFSDSMSLTMALKLDQQIVCGRPVKISCAVPKKG---AGADS-------------T 386

Query: 308 QAKPVPEMKEAE----TGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLAD 340
             +  P  +E E     G S+ SGKIRRRTCYECGEKGHLSS CPKK  AD
Sbjct: 387 DTRSAPARQETENLESAGSSATSGKIRRRTCYECGEKGHLSSACPKKQNAD 420

The following BLAST results are available for this feature:
BLAST of Carg00283 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022139342.12.6e-8669.76protein gar2 [Momordica charantia][more]
XP_023517053.12.9e-8571.26protein gar2 [Cucurbita pepo subsp. pepo][more]
XP_022943192.16.4e-8572.40protein gar2 [Cucurbita moschata][more]
XP_022986056.18.4e-8572.69protein gar2-like [Cucurbita maxima][more]
XP_011654941.12.4e-8469.53PREDICTED: protein gar2 isoform X1 [Cucumis sativus][more]
BLAST of Carg00283 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G55340.13.9e-4443.28phragmoplastin interacting protein 1[more]
AT1G74230.16.5e-0730.00glycine-rich RNA-binding protein 5[more]
AT1G60000.18.5e-0733.33RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G60650.11.1e-0627.78RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT4G24770.11.1e-0637.6531-kDa RNA binding protein[more]
BLAST of Carg00283 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P41891|GAR2_SCHPO2.8e-0730.77Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN... [more]
sp|Q7XTT4|NUCL2_ORYSJ6.2e-0730.19Nucleolin 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0620700 PE=2 SV=2[more]
sp|Q9WX37|RBPE_NOSS18.2e-0740.45Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / U... [more]
sp|Q8BGD9|IF4B_MOUSE1.8e-0632.88Eukaryotic translation initiation factor 4B OS=Mus musculus OX=10090 GN=Eif4b PE... [more]
sp|O14369|SCE3_SCHPO2.4e-0638.27Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATC... [more]
BLAST of Carg00283 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLT8|A0A0A0KLT8_CUCSA1.6e-8469.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1[more]
tr|A0A1S3CF29|A0A1S3CF29_CUCME4.0e-8370.21RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194... [more]
tr|A0A068TVG2|A0A068TVG2_COFCA1.2e-6858.77Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00029804001 PE=4 ... [more]
tr|A0A2I4FY07|A0A2I4FY07_9ROSI4.4e-6659.31protein gar2 isoform X1 OS=Juglans regia OX=51240 GN=LOC109003035 PE=4 SV=1[more]
tr|A0A2I4FY15|A0A2I4FY15_9ROSI4.4e-6659.31protein gar2 isoform X2 OS=Juglans regia OX=51240 GN=LOC109003035 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR001878Znf_CCHC
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00283-RACarg00283-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..117
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 311..336
e-value: 1.3E-7
score: 33.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..306
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 191..289
NoneNo IPR availablePANTHERPTHR23236:SF11EUKARYOTIC TRANSLATION INITIATION FACTOR 4Hcoord: 191..289
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 191..263
e-value: 6.9E-15
score: 65.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 192..261
e-value: 2.0E-11
score: 43.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 190..267
score: 13.584
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 318..334
e-value: 2.1E-4
score: 30.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 317..334
e-value: 4.1E-6
score: 26.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 319..334
score: 10.708
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 171..275
e-value: 1.8E-18
score: 68.4
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 187..275
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 123..159
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 313..335