CSPI07G13120 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G13120
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RNA-directed DNA polymerase (Reverse transcriptase)
Location	Chr7 : 11540016 .. 11540999 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAATGGCAAACCTAGAGGCAGAATTTTCCCAAACAGAGGAATCAGACAAGGAGATCCTTTATCCTCTTTCATTTTTGTGCTATCCATAGATTATCTTAGCAGGATTCTACAACATCTTGAGCAACAGAAACAAATAAAAGGTATCACAATAAAAGATTTAAATCTAACTCACCTTCTCTTTTCAGATGACATCTTGGTCTTTGTTGAAGATAGTGGTGAATATATTAGGAATCTTCAATTCGCTATTCACCTTTTTGAAAAGGCCATCGACTTAAACATTAACCTCAACAAGTCCACCATCTCTCCAGTTAACGTTTCAAAAGAGAGATCAGATAAGATTGCAGTCAGTTAGGGGATAAAGACATATTTTCTCCCGATAACATACTTAGGGATGCCTCTTGGGGGCAATCCAAGATCAAAACCTTTTTGGGACAATATTACAGAGAAGATTCAGAAAAAACTGAACAAATGGAAATATTCCTTCATCGCAAAGGGAGGTAGAATTACTTTCATTAACACATCACTTGTCAGTCTACCTATATATCAACTCTCTATGTTTAAAGCACCTACTCATGCATATAAAACCATTGAGAAATATTGGAGGAATTTTCTCTGGAAAGGTAACTACGACAACATCTGCATAACAGGAACTCAAAAAAACAACCTCAACCTTGTTAAATAGTCTAAAGTTACAAACTCTCTCGACTCTAGAGGATTGGGCATTACACCTCTTTCTGCTACAAATTTTGCTTTGCTCACAAAATGGCTATGGAGATATTTAAATGAACCAAATGCTCTCTGGAAATCTCTAATTGATGCAAAATACTGTTGTAGAGATATGAATATGTTTCCTATCGCTGCAAAATACAGTAGCTCCAATGCTCCATGGAGATCCATTGATTGGTTCAACTCACAAATTAAGTGGAAAGTTAATAATGGCAGCTCTTTATCCTTCTGGCATAGCAATTGGAGCACATAG

mRNA sequence

ATGATCAATGGCAAACCTAGAGGCAGAATTTTCCCAAACAGAGGAATCAGACAAGGAGATCCTTTATCCTCTTTCATTTTTGTGCTATCCATAGATTATCTTAGCAGGATTCTACAACATCTTGAGCAACAGAAACAAATAAAAGATGACATCTTGGTCTTTGTTGAAGATAGTGGTGAATATATTAGGAATCTTCAATTCGCTATTCACCTTTTTGAAAAGGCCATCGACTTAAACATTAACCTCAACAAGTCCACCATCTCTCCAGTTAACGTTTCAAAAGAGAGATCAGATAAGATTGCATCTAAAGTTACAAACTCTCTCGACTCTAGAGGATTGGGCATTACACCTCTTTCTGCTACAAATTTTGCTTTGCTCACAAAATGGCTATGGAGATATTTAAATGAACCAAATGCTCTCTGGAAATCTCTAATTGATGCAAAATACTGTTGTAGAGATATGAATATGTTTCCTATCGCTGCAAAATACAGTAGCTCCAATGCTCCATGGAGATCCATTGATTGGTTCAACTCACAAATTAAGTGGAAAGTTAATAATGGCAGCTCTTTATCCTTCTGGCATAGCAATTGGAGCACATAG

Coding sequence (CDS)

ATGATCAATGGCAAACCTAGAGGCAGAATTTTCCCAAACAGAGGAATCAGACAAGGAGATCCTTTATCCTCTTTCATTTTTGTGCTATCCATAGATTATCTTAGCAGGATTCTACAACATCTTGAGCAACAGAAACAAATAAAAGATGACATCTTGGTCTTTGTTGAAGATAGTGGTGAATATATTAGGAATCTTCAATTCGCTATTCACCTTTTTGAAAAGGCCATCGACTTAAACATTAACCTCAACAAGTCCACCATCTCTCCAGTTAACGTTTCAAAAGAGAGATCAGATAAGATTGCATCTAAAGTTACAAACTCTCTCGACTCTAGAGGATTGGGCATTACACCTCTTTCTGCTACAAATTTTGCTTTGCTCACAAAATGGCTATGGAGATATTTAAATGAACCAAATGCTCTCTGGAAATCTCTAATTGATGCAAAATACTGTTGTAGAGATATGAATATGTTTCCTATCGCTGCAAAATACAGTAGCTCCAATGCTCCATGGAGATCCATTGATTGGTTCAACTCACAAATTAAGTGGAAAGTTAATAATGGCAGCTCTTTATCCTTCTGGCATAGCAATTGGAGCACATAG

Homology

[Close]

BLAST of CSPI07G13120 vs. Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 1  MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQIKDDILVFVEDSGE 60
          +ING P+G + P+RG+RQGDPLS ++F+L  + LS + +  ++Q ++     + V ++  
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPG---IRVSNNSP 72

Query: 61 YIRNLQFA 69
           I +L FA
Sbjct: 73 RINHLLFA 77

[Close]

BLAST of CSPI07G13120 vs. TrEMBL
Match: A6YTD8_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.2e-21
Identity = 59/132 (44.70%), Postives = 91/132 (68.94%), Query Frame = 1


Query: 1   MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQ---IKD-------- 60
           +ING+PRG+  P+RGI QGDP+S FIFVL++DYLSR+++ L  + +   + D        
Sbjct: 168 IINGRPRGKFQPSRGIHQGDPISPFIFVLAMDYLSRLIETLVDKIKGVSLNDNLNLTHLL 227

Query: 61  ---DILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPVNVSKERSDKIASK--- 116
              DIL+FVED+ + ++NL+  IHLF+ A+ +N+NLNKSTISPVN+   R++++A+    
Sbjct: 228 FAYDILLFVEDNEDSLKNLRNVIHLFQLALGINVNLNKSTISPVNLGASRTNQVATSWGI 287

[Close]

BLAST of CSPI07G13120 vs. TrEMBL
Match: A5BZV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006044 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 70/245 (28.57%), Postives = 111/245 (45.31%), Query Frame = 1


Query: 1   MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQI------------- 60
           M+NG P G    ++G+RQGDPLS ++FV+ ++ LS +++   ++  I             
Sbjct: 339 MVNGTPAGFFSSSKGLRQGDPLSPYLFVMGMEVLSVLIRRAMEEGFILGCKIQRDRGRAV 398

Query: 61  -------KDDILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPVNVSKERSDKI 120
                   DD +VF E   EY+ NL + +  FE A  L INL KS + PV    +R ++ 
Sbjct: 399 HIAHLLFADDTIVFCEAKKEYLTNLSWILFWFEAAXGLRINLAKSEVIPVG-EVQRIEEX 458

Query: 121 ASKVTNSL------------------------DSRGLGITPLSATNFALLTKWLWRYLNE 180
           A ++   +                        ++ GLGI   +  N ALL KW WR+ ++
Sbjct: 459 AVELGCRVGQLPSVYLGLXLGXPNKAXYGWDGENGGLGIRKFTIMNKALLGKWTWRFASD 518

Query: 181 PNALWKSLIDAKYCCRDMNMFPIAAKYSSSNAPWRSI----DWFNSQIKWKVNNGSSLSF 198
             ALWK +++AKY   D       A  +     W+ I     W   ++ + V  G+ +SF
Sbjct: 519 KEALWKHVLEAKYGQEDYGWRTKKAVGACGVGVWKEILKEAGWCWDKMGFNVGKGNKISF 578

[Close]

BLAST of CSPI07G13120 vs. TrEMBL
Match: A5CBF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028525 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.3e-19
Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 1


Query: 1   MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQIK------------ 60
           +ING P G    ++G+RQGDP+S ++F+L ++ LS +++   Q   I             
Sbjct: 375 LINGVPAGFFSSSKGLRQGDPISPYLFILGMEVLSXLIRRAVQGNFISGCRLRGRGDAEI 434

Query: 61  --------DDILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPV---NVSKERS 120
                   DD ++F E S + + +L + +  FE A  L INL KS + PV   +  +E +
Sbjct: 435 MVSHLLFADDTILFCEASKDQLTHLGWILAWFEVASGLRINLAKSELIPVGEIDNIEEMA 494

Query: 121 DKIASKVTNSLDSRGLGITPLSATNFALLTKWLWRYLNEPNALWKSLIDAKYCCRDMNMF 180
            ++  ++ +  +  GLGI  +   N  LL KW+WR+  E + LWK +I  K+        
Sbjct: 495 VELGCRIGSFPEKGGLGIRRMGLLNKVLLGKWIWRFAVEKDVLWKKVIGVKHGLEGCGWK 554

Query: 181 PIAAKYSSSNAPWRSI----DWFNSQIKWKVNNGSSLSFWHSNW 198
              A+       W+ I     W  + +K+KV  G+ + FW  +W
Sbjct: 555 SKEARGPFGVGVWKEILKEMSWCWNNMKFKVVRGTKIMFWIDHW 598

[Close]

BLAST of CSPI07G13120 vs. TrEMBL
Match: A5BCE8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013346 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 71/247 (28.74%), Postives = 107/247 (43.32%), Query Frame = 1


Query: 1    MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQIK------------ 60
            +ING P G    ++G+RQGDPLS ++FVL ++ LS +L+   +   +             
Sbjct: 2581 LINGVPVGFFSNSKGLRQGDPLSPYLFVLGMEXLSTLLRXAGEGGFLSNCRLRGRXGEEL 2640

Query: 61   --------DDILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPVNVSKERSDKI 120
                    DD ++F +   E + NL + +  FE A  L INL KS   PV    +  +++
Sbjct: 2641 TVSHLLFADDTIIFCKARREQLTNLSWILAWFEAASSLRINLAKSVQIPVG-EVDELEEL 2700

Query: 121  ASKVTNSL--------------------------DSRGLGITPLSATNFALLTKWLWRYL 180
            A+++   L                          D  GLGI  +   N ALL KW+WRY+
Sbjct: 2701 AAELGCRLGALPTVYWGCPLEPIIKPLLPGMGPKDEGGLGIRKIDLLNKALLGKWVWRYV 2760

Query: 181  NEPNALWKSLIDAKYCCRDMNMFPIAAKYSSSNAPWRSI----DWFNSQIKWKVNNGSSL 198
             E + LWK++I  KY              S     W+ I    DW    I++KV  G+ +
Sbjct: 2761 YEKDNLWKTVIGVKYGQEGCGWRTKEVCGSFGVGLWKEIMKEADWCWESIEFKVGKGTKV 2820

[Close]

BLAST of CSPI07G13120 vs. TrEMBL
Match: A5BQN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029835 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 71/237 (29.96%), Postives = 107/237 (45.15%), Query Frame = 1


Query: 1    MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQIK------------ 60
            +ING P G    ++G+RQGDPLS ++FVL ++ LS +++   +   I             
Sbjct: 1236 LINGVPAGFFSNSKGLRQGDPLSPYLFVLGMEVLSTLIRRXGEXGFISGCRLRGRGGEEL 1295

Query: 61   --------DDILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPVNVSKERSDKI 120
                    DD L+F +   E + NL + +  FE A  L INL KS + PV    +  +++
Sbjct: 1296 AVSHLLFADDTLIFCKARXEQLTNLSWILAWFEAASGLRINLAKSVLIPVG-EVDELEEL 1355

Query: 121  ASKV---TNSLDSRGLGITPLSA-------------TNFALLTKWLWRYLNEPNALWKSL 180
            A+++     +L +  LG+ PL A              N ALL KW+WRY  E + LWK++
Sbjct: 1356 AAELGCRLGALPTVYLGL-PLGAHHKTSSSWDGIDLLNKALLGKWVWRYAYEKDNLWKTV 1415

Query: 181  IDAKYCCRDMNMFPIAAKYSSSNAPWRSI----DWFNSQIKWKVNNGSSLSFWHSNW 198
            I  KY                    W+ I    DW    I +KV  G+ + FW   W
Sbjct: 1416 IGVKYGQEGCRWKTKEVCGPFGVGLWKEIMKEADWCWESIIFKVGKGNRVMFWTDKW 1470

[Close]

BLAST of CSPI07G13120 vs. TAIR10
Match: ATMG01250.1 (ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase))

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 1  MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQIKDDILVFVEDSGE 60
          +ING P+G + P+RG+RQGDPLS ++F+L  + LS + +  ++Q ++     + V ++  
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPG---IRVSNNSP 72

Query: 61 YIRNLQFA 69
           I +L FA
Sbjct: 73 RINHLLFA 77

[Close]

BLAST of CSPI07G13120 vs. NCBI nr
Match: gi|659068893|ref|XP_008446987.1| (PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.9e-48
Identity = 110/234 (47.01%), Postives = 141/234 (60.26%), Query Frame = 1


Query: 1   MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQIKD----------- 60
           ++NG+P+GRI  NRG+RQGDPLS F+FV+++DYLSR+L HLE    IK            
Sbjct: 152 IVNGRPQGRIKANRGLRQGDPLSPFLFVIAMDYLSRLLSHLESSGAIKGVSLNSNCNISH 211

Query: 61  -----DILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPVNVSKERSDKIAS-- 120
                DIL+F+ED+  ++ NL+ A+ LFE+A  L INL KS + PVNVS  R+ + AS  
Sbjct: 212 ILFAYDILLFIEDNDCFLNNLRMALSLFERASGLKINLLKSALVPVNVSLNRAKECASFW 271

Query: 121 --------------KVTNSLDSRGLGITPLSATNFALLTKWLWRYLNEPNALWKSLIDAK 180
                         KV  S +  GLGI+ L  TN ALL+KWLW YL+EPNALW+ LI  K
Sbjct: 272 GNNGSEGSYLINWTKVFKSKEEGGLGISRLHVTNKALLSKWLWCYLSEPNALWRRLIQCK 331

Query: 181 YCCRDMNMFPIAAKYSSSNAPWRS----IDWFNSQIKWKVNNGSSLSFWHSNWS 199
           Y        P     S+S APWRS    IDWF S   W++NNG  +SFW+SNWS
Sbjct: 332 YKGNYPGDIPSNISSSTSKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNWS 385

[Close]

BLAST of CSPI07G13120 vs. NCBI nr
Match: gi|659131345|ref|XP_008465637.1| (PREDICTED: putative ribonuclease H protein At1g65750, partial [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 73/151 (48.34%), Postives = 88/151 (58.28%), Query Frame = 1


Query: 68  AIHLFEKAIDLNINLNKSTISPVNVSKERSDKIAS----------------KVTNSLDSR 127
           A+ LFE+A  L INL +S + PVNVS  R+   AS                KV+ S +  
Sbjct: 2   ALSLFERASGLKINLLESALVPVNVSVNRAKDCASLWGNNGTEGSHLINWTKVSKSKEEG 61

Query: 128 GLGITPLSATNFALLTKWLWRYLNEPNALWKSLIDAKYCCRDMNMFPIAAKYSSSNAPWR 187
           GLGI  L  TN ALLTKWLWRYL+EP ALW+SLI+ KY        P     S+S APWR
Sbjct: 62  GLGILRLHVTNKALLTKWLWRYLSEPKALWRSLIECKYKGNYPGDIPSNISSSTSKAPWR 121

Query: 188 S----IDWFNSQIKWKVNNGSSLSFWHSNWS 199
           S    IDWF S   W++NNG  +SFW+SNWS
Sbjct: 122 SIIDNIDWFKSNQSWELNNGDQISFWYSNWS 152

[Close]

BLAST of CSPI07G13120 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = 1


Query: 1   MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQIK------------ 60
           ++NG P+GRI   RGIRQGDPLS FIFV+++DYLSR+L HLE +  IK            
Sbjct: 78  LLNGSPKGRIKAERGIRQGDPLSPFIFVIAMDYLSRLLSHLETKGAIKGVSFNNCCNISH 137

Query: 61  ----DDILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPVNVSKERSDKIA 102
               DD+L+FVED+ +Y+ NLQ A+ LFEKA  L  N +KSTISP+N+S +R+D+IA
Sbjct: 138 LLFADDVLIFVEDNEKYLSNLQMALSLFEKASGLTFNHSKSTISPINISADRTDQIA 194

[Close]

BLAST of CSPI07G13120 vs. NCBI nr
Match: gi|659086627|ref|XP_008444035.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-23
Identity = 57/102 (55.88%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 102 SKVTNSLDSRGLGITPLSATNFALLTKWLWRYLNEPNALWKSLIDAKYCCRDMNMFPIAA 161
           +KV+ S +  GLGI+ L  TN ALLTKWLWRYL+EPNALW+SLI  KY        P   
Sbjct: 104 TKVSKSKEEGGLGISRLHVTNKALLTKWLWRYLSEPNALWRSLIQCKYKGNYPGDIPSNI 163

Query: 162 KYSSSNAPWRS-----IDWFNSQIKWKVNNGSSLSFWHSNWS 199
             S+S APWRS     IDWF S   WK+NNG  +SFW+SNWS
Sbjct: 164 SSSTSKAPWRSIIDNIIDWFKSNQSWKLNNGDQISFWYSNWS 205

[Close]

BLAST of CSPI07G13120 vs. NCBI nr
Match: gi|150036245|gb|ABR67408.1| (reverse transcriptase [Cucumis melo subsp. melo])

HSP 1 Score: 109.4 bits (272), Expect = 7.4e-21
Identity = 59/132 (44.70%), Postives = 91/132 (68.94%), Query Frame = 1


Query: 1   MINGKPRGRIFPNRGIRQGDPLSSFIFVLSIDYLSRILQHLEQQKQ---IKD-------- 60
           +ING+PRG+  P+RGI QGDP+S FIFVL++DYLSR+++ L  + +   + D        
Sbjct: 168 IINGRPRGKFQPSRGIHQGDPISPFIFVLAMDYLSRLIETLVDKIKGVSLNDNLNLTHLL 227

Query: 61  ---DILVFVEDSGEYIRNLQFAIHLFEKAIDLNINLNKSTISPVNVSKERSDKIASK--- 116
              DIL+FVED+ + ++NL+  IHLF+ A+ +N+NLNKSTISPVN+   R++++A+    
Sbjct: 228 FAYDILLFVEDNEDSLKNLRNVIHLFQLALGINVNLNKSTISPVNLGASRTNQVATSWGI 287

The following BLAST results are available for this feature:

BLAST of CSPI07G13120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M1250_ARATH	2.3e-06	36.76	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CSPI07G13120 vs. TrEMBL


Match Name	E-value	Identity	Description
A6YTD8_CUCME	5.2e-21	44.70	Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5BZV7_VITVI	2.8e-19	28.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006044 PE=4 SV=1	[more]
A5CBF3_VITVI	6.3e-19	28.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028525 PE=4 SV=1	[more]
A5BCE8_VITVI	3.5e-17	28.74	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013346 PE=4 SV=1	[more]
A5BQN8_VITVI	3.8e-16	29.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029835 PE=4 SV=1	[more]

BLAST of CSPI07G13120 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG01250.1	1.3e-07	36.76	ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)	[more]

BLAST of CSPI07G13120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068893\|ref\|XP_008446987.1\|	1.9e-48	47.01	PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo]	[more]
gi\|659131345\|ref\|XP_008465637.1\|	2.4e-27	48.34	PREDICTED: putative ribonuclease H protein At1g65750, partial [Cucumis melo]	[more]
gi\|659130833\|ref\|XP_008465376.1\|	1.1e-24	52.99	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659086627\|ref\|XP_008444035.1\|	3.6e-23	55.88	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|150036245\|gb\|ABR67408.1\|	7.4e-21	44.70	reverse transcriptase [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071704	organic substance metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G13120.1	CSPI07G13120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..88 score: 6.
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 1..115 score: 9
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 1..105 score: 8.3
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 1..105 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G13120	Cucsa.079170	Cucumber (Gy14) v1	cgycpiB079

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G13120	Wax gourd	cpiwgoB719
CSPI07G13120	Cucurbita maxima (Rimu)	cmacpiB045
CSPI07G13120	Cucurbita maxima (Rimu)	cmacpiB493
CSPI07G13120	Cucurbita moschata (Rifu)	cmocpiB035
CSPI07G13120	Cucurbita moschata (Rifu)	cmocpiB484
CSPI07G13120	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G13120	Melon (DHL92) v3.5.1	cpimeB529
CSPI07G13120	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G13120	Watermelon (97103) v1	cpiwmB586
CSPI07G13120	Cucurbita pepo (Zucchini)	cpecpiB593
CSPI07G13120	Cucurbita pepo (Zucchini)	cpecpiB801
CSPI07G13120	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G13120	Melon (DHL92) v3.6.1	cpimedB517
CSPI07G13120	Melon (DHL92) v3.6.1	cpimedB529
CSPI07G13120	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G13120	Silver-seed gourd	carcpiB0324
CSPI07G13120	Silver-seed gourd	carcpiB1050
CSPI07G13120	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G13120	Watermelon (97103) v2	cpiwmbB597