CSPI07G03170 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G03170
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Nucleic acid-binding, OB-fold-like protein
Location	Chr7 : 2544697 .. 2546736 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGAAAATGAGCCCATATTCTAAAACCCAATCTGGAAATCCCAAATGTGAGTAGAACGCGAAATTAATTTCTTAGGGTTAGGGTTTTGACCCTCAGGTTCGGTTTCATTCTCCATTTTCGCGTTCTATTTTCATCGGCAACGGAAATTCGTTCATATTCTTGGATTTCCATGGCGACGCCAGCAGCCAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTAAAGCCTGGTACCAGTGGCCACACTCTCACCGTCAAGGTTGTGAGTTCCAAAAATGTTAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACTGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGGTGTGTTTCTCTGATGATTTTGTTTGAAAGCTTACGTTTTTCTCATCTTTTGAATGTATTCATGTGCTTGCTGAGACGATTTTTTGTATGTTTCCATTTCGTTGGATGTCATTTGGTGATTTTGAATTCTTCTGGAACAGTTAGTGGTCTTCTTTTTTGTTTGTGGAAGTCCTTGATAACTGAGAAGTTACAATATAGACTGCAAATAACTCTCCTTTACAGTGTTATATAATCTTAAAGAGTTGCACCAATGAAAATTTATTTCACCCTAGAGATGACCTCCTCTGTGCTGAACCACCGTGGATAATAGTTATTTAATAGTTATATTCTAATATAAACAGAATTTGAATGTTGAGATAATTGTATTACAAGGAGTGTAATCATAATCAAACATTGAGATTCAAGATAACTTGAAAATGCGTTTAACAAGGTCTGTAATAGGAATACTCTTTGGGCAGAACACTTGGGTGTTTTGGATTGACTTTCTACATGCTTAAAGTTACTTTTTTTTTAACACTTAAAAACACTTCTTTTTAGCCTTTATGTACTAGTTGCGCAAAGTGAACTACATTGTCGAAAACAGAACACTAAGAATTACTGTAGGGTAGGATATCTTTTGTTCAAGCACTTGAAATGATCCTCAAGGACAGTTAGTGTGTGAGTTTTTTAGTCTGTGGGATTAGATGTTACTGGTCAGGATAGAGCTTCTTTTATGTTTATCTCCTTCAAGTCAGGACCGTTGAGATGGTGGATTTAGGTTCATGGGTGTAGACATACTTAGTCTTCATGTTGCATTGTTGTCATTTTAATTCCATAGCAGTTTGGCCCGTTTCTTTATATATTGCCTCTTACTTAGTGATTGATATTTTTTGATGTGTCTGCTTGGTATCAACAACCTATTGCTATGTATCGTGTATATTATAGGCGGTAAAATGCTTGTATTGGTGGAAGTGATCTTCAATCGTTGCTCATCCTCCCCCCTGCTCCCAAACAAACTTGTGTATGTTTGTATGTAATTAATGTTTATTGTGTAATATTATCTAAACAAATGGTTGTAAACTCTGCAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTAAGGAATGCAAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTAGCTGAACCAGCCAACTTTGAGGCTAAAGAAGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGACTTGAAATTATGCAGTGTTAATTATCATGGATTTACTTTCTTTATTGTGTGGTGGACTGCTATTTAACTGGTATACAGTTTCTATATGGCAACACAAAAATCTTGCTGAGAGTAATATAAGTTGATTATTGATGTGCCCAACTATGCTTAATTTGGATCTGATGTGATAAAGATCTTCAAAGGCAAAGTGCAAATGTTACTATCTGGTCTACTTATTATTTTGAAAAGTAAATAGAATGCTTTACCAATGTAGCTTTGTTTTGGTCCCTTATTTCTATTAACTATTGGGGTATTCTGCTAACTTGCATTTGAGGAAAGGTATATTTGATACATACATTGTAGCCTTTGCATTCATGGAAATCGAC

mRNA sequence

ATGGCGACGCCAGCAGCCAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTAAAGCCTGGTACCAGTGGCCACACTCTCACCGTCAAGGTTGTGAGTTCCAAAAATGTTAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACTGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTAAGGAATGCAAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTAGCTGAACCAGCCAACTTTGAGGCTAAAGAAGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA

Coding sequence (CDS)

ATGGCGACGCCAGCAGCCAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTAAAGCCTGGTACCAGTGGCCACACTCTCACCGTCAAGGTTGTGAGTTCCAAAAATGTTAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACTGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTAAGGAATGCAAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTAGCTGAACCAGCCAACTTTGAGGCTAAAGAAGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA

Homology

[Close]

BLAST of CSPI07G03170 vs. Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.7e-46
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = 1


Query: 2   ATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLT 61
           A     +  KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +
Sbjct: 8   AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS 67

Query: 62  RISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAE 121
           RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGR+E   
Sbjct: 68  RIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 127

Query: 122 PANFEAKEDNNLSLVEYELVNV 144
            A+F  KEDNNLSLVEYEL+NV
Sbjct: 128 AASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of CSPI07G03170 vs. TrEMBL
Match: A0A0A0K1C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G038160 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.3e-73
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEAKEDNNLSLVEYELVNVEE 146
           EPANFEAKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of CSPI07G03170 vs. TrEMBL
Match: W9RPM9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001332 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-52
Identity = 116/150 (77.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MATPAANAPA----KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKG-GRST-MLT 60
           MAT   NA      KRKPVF  V++LKPGTSGHTLTVKVVSSK VKV N+G GRS+ M+ 
Sbjct: 1   MATATTNATGMVTEKRKPVFKTVDQLKPGTSGHTLTVKVVSSKPVKVGNRGTGRSSAMVM 60

Query: 61  ARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKW 120
            RP Q TRISECLVGD+TG+I+FTARNDQVDIM PG TV LRNAKIDMFKG+MRLAVDKW
Sbjct: 61  NRPSQPTRISECLVGDDTGTILFTARNDQVDIMTPGTTVILRNAKIDMFKGTMRLAVDKW 120

Query: 121 GRVEVAEPANFEAKEDNNLSLVEYELVNVE 145
           GRVEV EPANFE KEDNNLSLVEYELVNV+
Sbjct: 121 GRVEVTEPANFEVKEDNNLSLVEYELVNVD 150

[Close]

BLAST of CSPI07G03170 vs. TrEMBL
Match: M5VHB0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012918mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-52
Identity = 108/144 (75.00%), Postives = 122/144 (84.72%), Query Frame = 1


Query: 2   ATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLT 61
           A+ +    AKRKPVFVKV++L+P TSGHTLTVKVVSSK VKV NK G     ++RP Q +
Sbjct: 6   ASGSGTVTAKRKPVFVKVDQLQPNTSGHTLTVKVVSSKPVKVTNKNGGRPSFSSRPLQPS 65

Query: 62  RISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAE 121
           RI+ECLVGDETG+I+FTARNDQVD MKP  TV LRNAKIDMFKG+MRLAVDKWGRVEV E
Sbjct: 66  RIAECLVGDETGTILFTARNDQVDTMKPDTTVILRNAKIDMFKGTMRLAVDKWGRVEVTE 125

Query: 122 PANFEAKEDNNLSLVEYELVNVEE 146
           PANF+ KE+NNLSLVEYELVNVEE
Sbjct: 126 PANFQVKEENNLSLVEYELVNVEE 149

[Close]

BLAST of CSPI07G03170 vs. TrEMBL
Match: V7BXN5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G101100g PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-51
Identity = 107/141 (75.89%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 6   ANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVV-NKGGRSTMLTARPQQLTRIS 65
           A    KRKPVFVKV++LKPGT+GHTLTVKVVSSK VK V N+GGRS++LTARP   +RI+
Sbjct: 7   ATTTTKRKPVFVKVDQLKPGTNGHTLTVKVVSSKPVKTVSNRGGRSSVLTARP---SRIA 66

Query: 66  ECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPAN 125
           EC+VGDETG+I+FTARN+QVD+M  G ++TLRNAKIDMFKGSMRLAVD+WGR+E  EPAN
Sbjct: 67  ECVVGDETGTIIFTARNEQVDLMNAGASLTLRNAKIDMFKGSMRLAVDRWGRIEATEPAN 126

Query: 126 FEAKEDNNLSLVEYELVNVEE 146
           FE KEDNNLSLVEYELVNV E
Sbjct: 127 FEVKEDNNLSLVEYELVNVVE 144

[Close]

BLAST of CSPI07G03170 vs. TrEMBL
Match: A0A0S3SHE6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100300 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.0e-51
Identity = 107/141 (75.89%), Postives = 123/141 (87.23%), Query Frame = 1


Query: 6   ANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVV-NKGGRSTMLTARPQQLTRIS 65
           A    KRKPVFVKV++L PGT+GHTLTVKVVSSK VK V N+GGRS++LTARP   +RI+
Sbjct: 2   ATTMTKRKPVFVKVDQLTPGTNGHTLTVKVVSSKPVKTVSNRGGRSSVLTARP---SRIA 61

Query: 66  ECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPAN 125
           ECLVGDETG+I+FTARN+QVD+M  G T+TLRNAKIDMFKGSMRLAVD+WGR+E  EPA+
Sbjct: 62  ECLVGDETGTIIFTARNEQVDLMNAGATLTLRNAKIDMFKGSMRLAVDRWGRIEATEPAD 121

Query: 126 FEAKEDNNLSLVEYELVNVEE 146
           FE KEDNNLSLVEYELVNV E
Sbjct: 122 FEVKEDNNLSLVEYELVNVVE 139

[Close]

BLAST of CSPI07G03170 vs. TAIR10
Match: AT4G28440.1 (AT4G28440.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-47
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = 1


Query: 2   ATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLT 61
           A     +  KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +
Sbjct: 8   AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS 67

Query: 62  RISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAE 121
           RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGR+E   
Sbjct: 68  RIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 127

Query: 122 PANFEAKEDNNLSLVEYELVNV 144
            A+F  KEDNNLSLVEYEL+NV
Sbjct: 128 AASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of CSPI07G03170 vs. TAIR10
Match: AT2G33845.1 (AT2G33845.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 184.1 bits (466), Expect = 6.1e-47
Identity = 98/142 (69.01%), Postives = 109/142 (76.76%), Query Frame = 1


Query: 4   PAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRI 63
           P      K+KPVFVKV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RI
Sbjct: 45  PQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP--QKPGAASSSHLRP---ARI 104

Query: 64  SECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPA 123
           SECLVGDET  I+FTARNDQV++MKPG TV LRNAKIDMFKGSMRLAVDKWGR+E  EPA
Sbjct: 105 SECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPA 164

Query: 124 NFEAKEDNNLSLVEYELVNVEE 146
           +   KEDNNLSLVEYELVNV E
Sbjct: 165 DITVKEDNNLSLVEYELVNVVE 181

[Close]

BLAST of CSPI07G03170 vs. TAIR10
Match: AT1G23750.1 (AT1G23750.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-45
Identity = 92/134 (68.66%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 12  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDE 71
           +KP F KV++L+PGTSGH + VK+VS+K   +V + GR+    AR     RISEC+VGDE
Sbjct: 10  KKPAFTKVDQLRPGTSGHNVNVKIVSTK---MVLQKGRADGPQARQ---LRISECIVGDE 69

Query: 72  TGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEAKEDN 131
           TG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAVDKWGRVEV EPA+F+ KED 
Sbjct: 70  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 129

Query: 132 NLSLVEYELVNVEE 146
           N+SL+EYELVNV E
Sbjct: 130 NMSLIEYELVNVVE 137

[Close]

BLAST of CSPI07G03170 vs. TAIR10
Match: AT1G10590.3 (AT1G10590.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-43
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 1


Query: 10  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVG 69
           A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVG
Sbjct: 21  ALRKPVFTKVNELRPGTNGHSLNVKVVNTK--MVMQRGGGRPMGPQSRQM--RIAECLVG 80

Query: 70  DETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA-EPANFEAK 129
           DETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGRVEVA EP +   K
Sbjct: 81  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 140

Query: 130 EDNNLSLVEYELVNVE 145
           +DNNLSL+EYELV+VE
Sbjct: 141 DDNNLSLIEYELVSVE 152

[Close]

BLAST of CSPI07G03170 vs. TAIR10
Match: AT1G03810.1 (AT1G03810.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-42
Identity = 87/139 (62.59%), Postives = 106/139 (76.26%), Query Frame = 1


Query: 3   TPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTR 62
           T A  AP KRKPVFVKV++LKPGTSGHTL VKV+ S  VK      R + LT +P    R
Sbjct: 7   TNATTAP-KRKPVFVKVDQLKPGTSGHTLIVKVLESNPVK---PAIRKSSLTQQPISSPR 66

Query: 63  ISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEP 122
           I+ECL+GD+TG I+FTARNDQVD+MK G TV LRNAKID+FK +MR+AVD+WGR+E+  P
Sbjct: 67  IAECLIGDDTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGP 126

Query: 123 ANFEAKEDNNLSLVEYELV 142
            +FE    NNLSLVEYE++
Sbjct: 127 VSFEVNRANNLSLVEYEVI 141

[Close]

BLAST of CSPI07G03170 vs. NCBI nr
Match: gi|449453557|ref|XP_004144523.1| (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 4.7e-73
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEAKEDNNLSLVEYELVNVEE 146
           EPANFEAKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of CSPI07G03170 vs. NCBI nr
Match: gi|659110951|ref|XP_008455497.1| (PREDICTED: uncharacterized protein At4g28440 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.0e-73
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEAKEDNNLSLVEYELVNVEE 146
           EPANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of CSPI07G03170 vs. NCBI nr
Match: gi|658045127|ref|XP_008358240.1| (PREDICTED: uncharacterized protein At4g28440-like [Malus domestica])

HSP 1 Score: 218.8 bits (556), Expect = 6.4e-54
Identity = 113/149 (75.84%), Postives = 125/149 (83.89%), Query Frame = 1


Query: 1   MATPAAN----APAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTAR 60
           MAT  AN      AKRKPVFVKVE+L+P T+GHTLTVKVVSSK VKV NK G  + L++R
Sbjct: 1   MATTTANNLGTVTAKRKPVFVKVEQLQPNTNGHTLTVKVVSSKPVKVTNKNGGRSSLSSR 60

Query: 61  PQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR 120
           P Q  RI+ECLVGDETG+I+FTARNDQVD MKP  TV LRNAKIDMFKG+MRLAVDKWGR
Sbjct: 61  PTQPARIAECLVGDETGTILFTARNDQVDTMKPDTTVNLRNAKIDMFKGTMRLAVDKWGR 120

Query: 121 VEVAEPANFEAKEDNNLSLVEYELVNVEE 146
           VEV EPANF+ KEDNNLSL+EYELVNVEE
Sbjct: 121 VEVTEPANFQVKEDNNLSLIEYELVNVEE 149

[Close]

BLAST of CSPI07G03170 vs. NCBI nr
Match: gi|694333053|ref|XP_009357136.1| (PREDICTED: uncharacterized protein At4g28440 [Pyrus x bretschneideri])

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 113/149 (75.84%), Postives = 125/149 (83.89%), Query Frame = 1


Query: 1   MATPAAN----APAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTAR 60
           MAT  AN      AKRKPVFVKVE+L+P T+GHTLTVKVVSSK VKV NK G  + L++R
Sbjct: 1   MATTTANNLGTVTAKRKPVFVKVEQLQPNTNGHTLTVKVVSSKPVKVTNKNGGRSSLSSR 60

Query: 61  PQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR 120
           P Q  RI+ECLVGDETG+I+FTARNDQVD MKP  TV LRNAKIDMFKG+MRLAVDKWGR
Sbjct: 61  PIQPARIAECLVGDETGTILFTARNDQVDTMKPDTTVNLRNAKIDMFKGTMRLAVDKWGR 120

Query: 121 VEVAEPANFEAKEDNNLSLVEYELVNVEE 146
           VEV EPANF+ KEDNNLSL+EYELVNVEE
Sbjct: 121 VEVTEPANFQVKEDNNLSLIEYELVNVEE 149

[Close]

BLAST of CSPI07G03170 vs. NCBI nr
Match: gi|1021561252|ref|XP_016171866.1| (PREDICTED: uncharacterized protein At4g28440-like [Arachis ipaensis])

HSP 1 Score: 215.3 bits (547), Expect = 7.0e-53
Identity = 116/147 (78.91%), Postives = 130/147 (88.44%), Query Frame = 1


Query: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVV-NKGGRSTMLTA-RPQ 60
           MATPAA    KRKPVFVKV++LKPGTSGHTLTVKVVSSK VK V N+GGR++ML A RP 
Sbjct: 1   MATPAA----KRKPVFVKVDQLKPGTSGHTLTVKVVSSKPVKTVSNRGGRTSMLAAARP- 60

Query: 61  QLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVE 120
             +RI+ECLVGDETG+IVFTARN+QV++MKPG+T+ LRNAKIDMFKGSMRLAVDKWGR+E
Sbjct: 61  --SRIAECLVGDETGTIVFTARNEQVELMKPGSTLILRNAKIDMFKGSMRLAVDKWGRIE 120

Query: 121 VAEPANFEAKEDNNLSLVEYELVNVEE 146
           V EPA FE KEDNNLSLVEYELVNV E
Sbjct: 121 VTEPATFEVKEDNNLSLVEYELVNVVE 140

The following BLAST results are available for this feature:

BLAST of CSPI07G03170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4844_ARATH	3.7e-46	64.79	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1	[more]

BLAST of CSPI07G03170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1C6_CUCSA	3.3e-73	99.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G038160 PE=4 SV=1	[more]
W9RPM9_9ROSA	1.1e-52	77.33	Uncharacterized protein OS=Morus notabilis GN=L484_001332 PE=4 SV=1	[more]
M5VHB0_PRUPE	1.9e-52	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012918mg PE=4 SV=1	[more]
V7BXN5_PHAVU	1.6e-51	75.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G101100g PE=4 SV=1	[more]
A0A0S3SHE6_PHAAN	6.0e-51	75.89	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100300 PE=...	[more]

BLAST of CSPI07G03170 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28440.1	2.1e-47	64.79	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	6.1e-47	69.01	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	3.4e-45	68.66	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	1.8e-43	67.65	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G03810.1	2.0e-42	62.59	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CSPI07G03170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453557\|ref\|XP_004144523.1\|	4.7e-73	99.31	PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus]	[more]
gi\|659110951\|ref\|XP_008455497.1\|	8.0e-73	99.31	PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]	[more]
gi\|658045127\|ref\|XP_008358240.1\|	6.4e-54	75.84	PREDICTED: uncharacterized protein At4g28440-like [Malus domestica]	[more]
gi\|694333053\|ref\|XP_009357136.1\|	1.1e-53	75.84	PREDICTED: uncharacterized protein At4g28440 [Pyrus x bretschneideri]	[more]
gi\|1021561252\|ref\|XP_016171866.1\|	7.0e-53	78.91	PREDICTED: uncharacterized protein At4g28440-like [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G03170.1	CSPI07G03170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 15..141 score: 1.5
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 7..143 score: 6.0
None	No IPR available	PANTHER	PTHR31472	FAMILY NOT NAMED	coord: 2..145 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G03170	Cla015644	Watermelon (97103) v1	cpiwmB624
CSPI07G03170	Csa7G038160	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G03170	MELO3C018870	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G03170	ClCG02G002390	Watermelon (Charleston Gray)	cpiwcgB574
CSPI07G03170	Lsi11G013920	Bottle gourd (USVL1VR-Ls)	cpilsiB505
CSPI07G03170	MELO3C018870.2	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G03170	CsaV3_7G003050	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G03170	Cla97C02G028840	Watermelon (97103) v2	cpiwmbB553
CSPI07G03170	Bhi05G001241	Wax gourd	cpiwgoB681
CSPI07G03170	Cucsa.181140	Cucumber (Gy14) v1	cgycpiB287
CSPI07G03170	CmaCh11G017940	Cucurbita maxima (Rimu)	cmacpiB144
CSPI07G03170	CmoCh19G009020	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G03170	CmoCh11G018690	Cucurbita moschata (Rifu)	cmocpiB131
CSPI07G03170	Cp4.1LG15g07110	Cucurbita pepo (Zucchini)	cpecpiB257
CSPI07G03170	Cp4.1LG04g03910	Cucurbita pepo (Zucchini)	cpecpiB692
CSPI07G03170	CsGy7G002840	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G03170	Carg18050	Silver-seed gourd	carcpiB1103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G03170	Wild cucumber (PI 183967)	cpicpiB090
CSPI07G03170	Cucurbita maxima (Rimu)	cmacpiB533
CSPI07G03170	Cucurbita maxima (Rimu)	cmacpiB576
CSPI07G03170	Cucurbita moschata (Rifu)	cmocpiB568
CSPI07G03170	Cucumber (Chinese Long) v2	cpicuB326
CSPI07G03170	Cucumber (Chinese Long) v2	cpicuB358
CSPI07G03170	Melon (DHL92) v3.5.1	cpimeB535
CSPI07G03170	Watermelon (97103) v1	cpiwmB621
CSPI07G03170	Cucurbita pepo (Zucchini)	cpecpiB301
CSPI07G03170	Bottle gourd (USVL1VR-Ls)	cpilsiB498
CSPI07G03170	Bottle gourd (USVL1VR-Ls)	cpilsiB514
CSPI07G03170	Melon (DHL92) v3.6.1	cpimedB521
CSPI07G03170	Cucumber (Gy14) v2	cgybcpiB087
CSPI07G03170	Silver-seed gourd	carcpiB0235
CSPI07G03170	Cucumber (Chinese Long) v3	cpicucB385
CSPI07G03170	Cucumber (Chinese Long) v3	cpicucB419
CSPI07G03170	Watermelon (97103) v2	cpiwmbB552
CSPI07G03170	Wax gourd	cpiwgoB680
CSPI07G03170	Wax gourd	cpiwgoB691