CSPI07G02970 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G02970
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 2424999 .. 2425872 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTAGATAGCAATAACTATAGTATATAGTAAGCCTTTTTCTTTCCTTTTAAGTTTCTAGCTTCGTCTCTCGTAAGAAATTACTATGATAACTTGCAGATCGTATCTCCGAATGCCACTCTCTTAGAAGACACGACGACTGTTAAAGAGACGGTCACAAAAGAAGAAGTCGAGGAACAATCGTCACCAGACACGACATCAAAAGAGAACGTAGAAGAAAAAGAAGAGAGTGTTAAAGTTGACGAAGTTGTTGATGAAAAATCGTCAGATGATTCAGAAGCCGTTGTTCCAAATGAAAAAGTTGAAGCAACGGCTGAAGAGGAAGAGGAGGAAGATGAGGTTGTTATCCTAACAGATGATGACGAGGTCGAGGAATTAGAATATAATGAAGAAGCTGCAGAAGTAGCCAAGGAAGAAAACGACAAACCCGACGAGTCATCGGTCGTACCGGAAGCCAAAGCTGTAGTATCAGAGGAGGCAGAGGAAGAAGATGAGAAGAAAGATGAAGCCGCAGAGGAGAAGAAAGAGTAAGGAAATATGGGATAAAAATTAGGCAATATGATGCATGGGATGGGATAGAGTTGTGTGTTAAAATATTAGTGTGTGGAATATATGTTTGGAAGTTTGGAAGTTTGGAAGCCACCTAAAGAGTCTCTTGACACGTCATTTTCCACGTGGCAAATAAAGTGTTGGTTTGGCTTTTGGTTGTGTAATGGTATAGGGCAAAATTGGGGTTTGTCCCATAATTTTAATTATATATGAGATGTATTTTTATAAGGAGTGGAACTGCTGCCATTATGTTCATCATATCAAGATGTATATTTTAATATTTTCATCTTGGTTGGAACTTGTGTTTATATATGTTGGGGAA

mRNA sequence

ATGATATTAGATAGCAATAACTATACTTCGTCTCTCGTAAGAAATTACTATGATAACTTGCAGATCGTATCTCCGAATGCCACTCTCTTAGAAGACACGACGACTGTTAAAGAGACGGTCACAAAAGAAGAAGTCGAGGAACAATCGTCACCAGACACGACATCAAAAGAGAACGTAGAAGAAAAAGAAGAGAGTGTTAAAGTTGACGAAGTTGTTGATGAAAAATCGTCAGATGATTCAGAAGCCGTTGTTCCAAATGAAAAAGTTGAAGCAACGGCTGAAGAGGAAGAGGAGGAAGATGAGGTTGTTATCCTAACAGATGATGACGAGGTCGAGGAATTAGAATATAATGAAGAAGCTGCAGAAGTAGCCAAGGAAGAAAACGACAAACCCGACGAGTCATCGGTCGTACCGGAAGCCAAAGCTGTAGTATCAGAGGAGGCAGAGGAAGAAGATGAGAAGAAAGATGAAGCCGCAGAGGAGAAGAAAGAGTAA

Coding sequence (CDS)

ATGATATTAGATAGCAATAACTATACTTCGTCTCTCGTAAGAAATTACTATGATAACTTGCAGATCGTATCTCCGAATGCCACTCTCTTAGAAGACACGACGACTGTTAAAGAGACGGTCACAAAAGAAGAAGTCGAGGAACAATCGTCACCAGACACGACATCAAAAGAGAACGTAGAAGAAAAAGAAGAGAGTGTTAAAGTTGACGAAGTTGTTGATGAAAAATCGTCAGATGATTCAGAAGCCGTTGTTCCAAATGAAAAAGTTGAAGCAACGGCTGAAGAGGAAGAGGAGGAAGATGAGGTTGTTATCCTAACAGATGATGACGAGGTCGAGGAATTAGAATATAATGAAGAAGCTGCAGAAGTAGCCAAGGAAGAAAACGACAAACCCGACGAGTCATCGGTCGTACCGGAAGCCAAAGCTGTAGTATCAGAGGAGGCAGAGGAAGAAGATGAGAAGAAAGATGAAGCCGCAGAGGAGAAGAAAGAGTAA

Homology

[Close]

BLAST of CSPI07G02970 vs. TrEMBL
Match: A0A0A0K197_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037490 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 20  LQIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 79
           ++IVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD
Sbjct: 4   VEIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 63

Query: 80  SEAVVPNEKVEATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVPE 139
           SEAVVPNEKVEATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVPE
Sbjct: 64  SEAVVPNEKVEATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVPE 123

Query: 140 AKAVVSEEAEEEDEKKDEAAEEKKE 165
           AKAVVSEEAEEEDEKKDEAAEEKKE
Sbjct: 124 AKAVVSEEAEEEDEKKDEAAEEKKE 148

[Close]

BLAST of CSPI07G02970 vs. NCBI nr
Match: gi|778723579|ref|XP_011658674.1| (PREDICTED: nucleoplasmin-like protein ANO39 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 2.0e-56
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 20  LQIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 79
           ++IVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD
Sbjct: 4   VEIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 63

Query: 80  SEAVVPNEKVEATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVPE 139
           SEAVVPNEKVEATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVPE
Sbjct: 64  SEAVVPNEKVEATAEEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDESSVVPE 123

Query: 140 AKAVVSEEAEEEDEKKDEAAEEKKE 165
           AKAVVSEEAEEEDEKKDEAAEEKKE
Sbjct: 124 AKAVVSEEAEEEDEKKDEAAEEKKE 148

[Close]

BLAST of CSPI07G02970 vs. NCBI nr
Match: gi|659110983|ref|XP_008455514.1| (PREDICTED: uncharacterized protein C53C9.2-like [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 120/150 (80.00%), Postives = 128/150 (85.33%), Query Frame = 1


Query: 20  LQIVSPNATLLEDTTTVKETVTKEEVEEQSSPDTTSKENVEEKEESVKVDEVVDEKSSDD 79
           ++ VSPNA LLEDTT VKET  KEEVEEQSSP+ TSKE VEEKEESVKV EVVDE+SSDD
Sbjct: 4   VETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKV-EVVDERSSDD 63

Query: 80  -SEAVVPNEKVEATA----EEEEEEDEVVILTDDDEVEELEYNEEAAEVAKEENDKPDES 139
            SEAVV NEKVEATA    EEEEEEDEVVILTDDDEVEE   ++EAA VAKEENDKPDE 
Sbjct: 64  YSEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEVEEYLESKEAAGVAKEENDKPDEP 123

Query: 140 SVVPEAKAVVSEEAEEEDEKKDEAAEEKKE 165
           SVV EAKA+VSEEAEE+DEKK EA EEKKE
Sbjct: 124 SVVAEAKALVSEEAEEKDEKK-EAREEKKE 151

The following BLAST results are available for this feature:

BLAST of CSPI07G02970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G02970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K197_CUCSA	1.4e-56	98.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037490 PE=4 SV=1	[more]

BLAST of CSPI07G02970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G02970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778723579\|ref\|XP_011658674.1\|	2.0e-56	98.62	PREDICTED: nucleoplasmin-like protein ANO39 [Cucumis sativus]	[more]
gi\|659110983\|ref\|XP_008455514.1\|	1.5e-35	80.00	PREDICTED: uncharacterized protein C53C9.2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G02970.1	CSPI07G02970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 141..164 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G02970	CsaV3_7G002860	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G02970	CsGy7G002660	Cucumber (Gy14) v2	cgybcpiB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G02970	Bottle gourd (USVL1VR-Ls)	cpilsiB498
CSPI07G02970	Bottle gourd (USVL1VR-Ls)	cpilsiB505
CSPI07G02970	Bottle gourd (USVL1VR-Ls)	cpilsiB514
CSPI07G02970	Melon (DHL92) v3.6.1	cpimedB506
CSPI07G02970	Melon (DHL92) v3.6.1	cpimedB521
CSPI07G02970	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G02970	Silver-seed gourd	carcpiB0235
CSPI07G02970	Silver-seed gourd	carcpiB0387
CSPI07G02970	Silver-seed gourd	carcpiB1103
CSPI07G02970	Cucumber (Chinese Long) v3	cpicucB419
CSPI07G02970	Watermelon (97103) v2	cpiwmbB552
CSPI07G02970	Watermelon (97103) v2	cpiwmbB553
CSPI07G02970	Wax gourd	cpiwgoB680
CSPI07G02970	Wax gourd	cpiwgoB681
CSPI07G02970	Wax gourd	cpiwgoB691
CSPI07G02970	Cucumber (Gy14) v1	cgycpiB287
CSPI07G02970	Cucurbita maxima (Rimu)	cmacpiB151
CSPI07G02970	Cucurbita maxima (Rimu)	cmacpiB533
CSPI07G02970	Cucurbita maxima (Rimu)	cmacpiB582
CSPI07G02970	Cucurbita moschata (Rifu)	cmocpiB131
CSPI07G02970	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G02970	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G02970	Cucumber (Chinese Long) v2	cpicuB358
CSPI07G02970	Melon (DHL92) v3.5.1	cpimeB535
CSPI07G02970	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G02970	Melon (DHL92) v3.5.1	cpimeB522
CSPI07G02970	Watermelon (Charleston Gray)	cpiwcgB574
CSPI07G02970	Watermelon (97103) v1	cpiwmB621
CSPI07G02970	Watermelon (97103) v1	cpiwmB624
CSPI07G02970	Cucurbita pepo (Zucchini)	cpecpiB257
CSPI07G02970	Cucurbita pepo (Zucchini)	cpecpiB301
CSPI07G02970	Cucurbita pepo (Zucchini)	cpecpiB692