CSPI06G33030 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G33030
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransmembrane protein, putative
LocationChr6 : 27592803 .. 27594396 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAAATTCCGAACCCATCAAAATCCTATAATGGCTTTCTCTTCGTTACAAAATTTCATTCGTATCCATACCTCATTGATTTCAATCCCAAACTCCAAAAATCTCAACGCTGCTGCCTCTTTTCACACCACAATTAATAATAGCTACCTCCCTCCGCAGCTGCTCTCGACCAAGCGTCGTCGTCGAGCAGCCTCTTTGTGCATACAATGCCATGGTGGTGGTTTTTTTTCAATGGACGATGATGACAGCAGTGATAATGAAGGCCCTCTCGAAACAATCAACAAAGTTTACAAAAGTATAAAGAAGAAAGACGTTACTAAGTTGGCTAATGTAATAGCTGATCAACGTCCAGATATCGTGGATTCCATACCTTTTCTTCGAACCAAGCTGGTAAATTTTATTATTATTGAAGTTTTGGTGATTGAGTGTATTAAACATTAATAAATATATACATATGTGTTGTTGTTGTTGTTGTTATGTTGGTCAGAAAATGAGGAAGCTGGCGTCTCATATCATAAAGGGATTACAAGAGAACCTTGTGTTTTCAATCCAACCAACAACAAAAGATGGATCAATGGTGGGCATTATATGGAAAGTAGGTACATATTCTAAAACTAAAACCCACACCTTCAATTTGTTTTCTTTTTCTAATTGACACCAAATTCTTTTAGTGCTTAAAGAGTAACCCACTTGTGCCTTTAATTTATAACTATTTTCATATTATCCTACTTTGAAACATGAGTTCATGTAGCACACAATAAATGAAAAACGTGCCAAGAATTCGAATTCGTCTTACTACTTAAGTATATGGACAAATTTTCCTTTTACCACATGCAAAAAGTCATATTTTGATATATATGGATAGATAGTAGTAGTTTCATTTTTAGGCTATATTATGAAATTGACGATGATTTTTTCTCAGTCTCTTATTATTGTTTTTTACTATCATTTATCAATCTAATTTTCTAAGGTTGGTTTGATTCTATGAACGGATGTTTTTTTTTGTAAATTTAATTATTAACAAATATAGTTACAAAACAAAACCTAAATGATCCATCGTTGATGACAATGGTAGGTTGGAACAAACCGCTAATAAAAATTAAAGAAGGAATCACTATCCATTTTCACCATAGCTATGTTGGAATGTTATTGATTGGGTATGTATTCAACCAAAAAATATTTTTTTTAAAAAAAAAACGTATCTTCTCCTATTATATATCTTCCTTCAAGTTCATTATTCTCAACATTTTTTCTTTTAAATTTGAATTGGGTTTAGAAACTTGAAGACGCTATTGGATCCTCTTCTTCAACTCATGCCAACGAAAATGGTAAGTGGAATTCTAAAAAGTCGATATTCCATTATTAATTGATCCATTCTTATCGTTGTCAAACTACTAAATAAATTAAAAACAATTATAATAACTTTTCATTTTTGTGAATATCACACATCTAACCTTAGCTACTACCATTATATATATAATTGGTGAGGTAATGAATTATGGAATTACAAATAATAATGTTGATGGATCATTTTTTGACAGATGAAATGGAACGAGGAGTCAAAGTCAAAAACGAGAAGAGTTGTATCTTTGTG

mRNA sequence

ATGGCTTTCTCTTCGTTACAAAATTTCATTCGTATCCATACCTCATTGATTTCAATCCCAAACTCCAAAAATCTCAACGCTGCTGCCTCTTTTCACACCACAATTAATAATAGCTACCTCCCTCCGCAGCTGCTCTCGACCAAGCGTCGTCGTCGAGCAGCCTCTTTGTGCATACAATGCCATGGTGGTGGTTTTTTTTCAATGGACGATGATGACAGCAGTGATAATGAAGGCCCTCTCGAAACAATCAACAAAGTTTACAAAAGTATAAAGAAGAAAGACGTTACTAAGTTGGCTAATGTAATAGCTGATCAACGTCCAGATATCGTGGATTCCATACCTTTTCTTCGAACCAAGCTGAAAATGAGGAAGCTGGCGTCTCATATCATAAAGGGATTACAAGAGAACCTTGTGTTTTCAATCCAACCAACAACAAAAGATGGATCAATGGTGGGCATTATATGGAAAGTAGAAACTTGA

Coding sequence (CDS)

ATGGCTTTCTCTTCGTTACAAAATTTCATTCGTATCCATACCTCATTGATTTCAATCCCAAACTCCAAAAATCTCAACGCTGCTGCCTCTTTTCACACCACAATTAATAATAGCTACCTCCCTCCGCAGCTGCTCTCGACCAAGCGTCGTCGTCGAGCAGCCTCTTTGTGCATACAATGCCATGGTGGTGGTTTTTTTTCAATGGACGATGATGACAGCAGTGATAATGAAGGCCCTCTCGAAACAATCAACAAAGTTTACAAAAGTATAAAGAAGAAAGACGTTACTAAGTTGGCTAATGTAATAGCTGATCAACGTCCAGATATCGTGGATTCCATACCTTTTCTTCGAACCAAGCTGAAAATGAGGAAGCTGGCGTCTCATATCATAAAGGGATTACAAGAGAACCTTGTGTTTTCAATCCAACCAACAACAAAAGATGGATCAATGGTGGGCATTATATGGAAAGTAGAAACTTGA
Homology
[Close]
BLAST of CSPI06G33030 vs. TrEMBL
Match: A0A0A0KL37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511720 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.4e-79
Identity = 153/157 (97.45%), Postives = 154/157 (98.09%), Query Frame = 1 

Query: 1   MAFSSLQNFIRIHTSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRRRAASLCIQC 60
           MAFSSLQNFIRI TSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRR AASLCIQC
Sbjct: 1   MAFSSLQNFIRIPTSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRRPAASLCIQC 60

Query: 61  HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDVTKLANVIADQRPDIVDSIPFLRTKL 120
           HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDV KLANVIADQRPDIVDSIPFLRT+L
Sbjct: 61  HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDVAKLANVIADQRPDIVDSIPFLRTRL 120

Query: 121 KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWKV 158
           KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWKV
Sbjct: 121 KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWKV 157

[Close]
BLAST of CSPI06G33030 vs. TrEMBL
Match: A0A0K9PEV5_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_266G00040 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 36/126 (28.57%), Postives = 67/126 (53.17%), Query Frame = 1 

Query: 51  RRAASLCI-----QCHGGGFFSMDDDDSSDNEG---------PLETINKVYKSIKKKDVT 110
           RR   LC      +  GGG    DDD+   N+G         PL T+ K+Y SIK +D+ 
Sbjct: 65  RRLTPLCHPSGPQEVEGGGDEEEDDDNDDKNDGTDDDDDDKQPLGTVRKLYNSIKDRDIQ 124

Query: 111 KLANVIADQRPDIVDSIPF----LRTKLKMRKLASHIIKGLQENLVFSIQPTTKDGSMVG 159
            L+ +I ++  +  + +P     L  K ++ +L S +++ + +N+VF ++P+ ++G  V 
Sbjct: 125 GLSELIGEECREFCNFVPAVNGPLEGKTQVLELLSMLMRSMGDNVVFVVKPSFQNGLDVT 184

[Close]
BLAST of CSPI06G33030 vs. NCBI nr
Match: gi|778720180|ref|XP_011658120.1| (PREDICTED: uncharacterized protein LOC105435947 isoform X1 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 6.3e-79
Identity = 153/157 (97.45%), Postives = 154/157 (98.09%), Query Frame = 1 

Query: 1   MAFSSLQNFIRIHTSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRRRAASLCIQC 60
           MAFSSLQNFIRI TSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRR AASLCIQC
Sbjct: 1   MAFSSLQNFIRIPTSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRRPAASLCIQC 60

Query: 61  HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDVTKLANVIADQRPDIVDSIPFLRTKL 120
           HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDV KLANVIADQRPDIVDSIPFLRT+L
Sbjct: 61  HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDVAKLANVIADQRPDIVDSIPFLRTRL 120

Query: 121 KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWKV 158
           KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWKV
Sbjct: 121 KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWKV 157

[Close]
BLAST of CSPI06G33030 vs. NCBI nr
Match: gi|778720183|ref|XP_011658121.1| (PREDICTED: uncharacterized protein LOC105435947 isoform X2 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.8e-78
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 1 

Query: 1   MAFSSLQNFIRIHTSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRRRAASLCIQC 60
           MAFSSLQNFIRI TSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRR AASLCIQC
Sbjct: 1   MAFSSLQNFIRIPTSLISIPNSKNLNAAASFHTTINNSYLPPQLLSTKRRRPAASLCIQC 60

Query: 61  HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDVTKLANVIADQRPDIVDSIPFLRTKL 120
           HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDV KLANVIADQRPDIVDSIPFLRT+L
Sbjct: 61  HGGGFFSMDDDDSSDNEGPLETINKVYKSIKKKDVAKLANVIADQRPDIVDSIPFLRTRL 120

Query: 121 KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWK 157
           KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWK
Sbjct: 121 KMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWK 156

[Close]
BLAST of CSPI06G33030 vs. NCBI nr
Match: gi|659079093|ref|XP_008440070.1| (PREDICTED: uncharacterized protein LOC103484658 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 8.2e-55
Identity = 121/159 (76.10%), Postives = 132/159 (83.02%), Query Frame = 1 

Query: 2   AFSSLQNFIRIHTSLISIPNSKNLNAAASFHTTINN-SYLPPQLLSTKRRRRAASLCIQC 61
           A SSLQNFI   TS     NS+NLNAAASFHTTINN SYLPPQ LSTKRRRR  SLC+QC
Sbjct: 4   ALSSLQNFIHFPTSFSISSNSRNLNAAASFHTTINNNSYLPPQPLSTKRRRRP-SLCVQC 63

Query: 62  HGGGFFSM-DDDDSSDN-EGPLETINKVYKSIKKKDVTKLANVIADQRPDIVDSIPFLRT 121
           HGGG FSM + DD+ DN E PLETINKVYKSIKKKDV +LANVIADQRPDI+DSIPFL T
Sbjct: 64  HGGGSFSMKNQDDNDDNDEDPLETINKVYKSIKKKDVIELANVIADQRPDIMDSIPFLGT 123

Query: 122 KLKMRKLASHIIKGLQENLVFSIQPTTKDGSMVGIIWKV 158
            LKMRKL S+++KGLQE+LVF + PT KDGSMVGI WKV
Sbjct: 124 SLKMRKLVSNMVKGLQESLVFYVLPTKKDGSMVGIKWKV 161

[Close]
BLAST of CSPI06G33030 vs. NCBI nr
Match: gi|901812971|gb|KMZ67491.1| (hypothetical protein ZOSMA_266G00040 [Zostera marina])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 36/126 (28.57%), Postives = 67/126 (53.17%), Query Frame = 1 

Query: 51  RRAASLCI-----QCHGGGFFSMDDDDSSDNEG---------PLETINKVYKSIKKKDVT 110
           RR   LC      +  GGG    DDD+   N+G         PL T+ K+Y SIK +D+ 
Sbjct: 65  RRLTPLCHPSGPQEVEGGGDEEEDDDNDDKNDGTDDDDDDKQPLGTVRKLYNSIKDRDIQ 124

Query: 111 KLANVIADQRPDIVDSIPF----LRTKLKMRKLASHIIKGLQENLVFSIQPTTKDGSMVG 159
            L+ +I ++  +  + +P     L  K ++ +L S +++ + +N+VF ++P+ ++G  V 
Sbjct: 125 GLSELIGEECREFCNFVPAVNGPLEGKTQVLELLSMLMRSMGDNVVFVVKPSFQNGLDVT 184

The following BLAST results are available for this feature:
BLAST of CSPI06G33030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G33030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL37_CUCSA4.4e-7997.45Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511720 PE=4 SV=1[more]
A0A0K9PEV5_ZOSMR1.7e-0628.57Uncharacterized protein OS=Zostera marina GN=ZOSMA_266G00040 PE=4 SV=1[more]
BLAST of CSPI06G33030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G33030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778720180|ref|XP_011658120.1|6.3e-7997.45PREDICTED: uncharacterized protein LOC105435947 isoform X1 [Cucumis sativus][more]
gi|778720183|ref|XP_011658121.1|1.8e-7897.44PREDICTED: uncharacterized protein LOC105435947 isoform X2 [Cucumis sativus][more]
gi|659079093|ref|XP_008440070.1|8.2e-5576.10PREDICTED: uncharacterized protein LOC103484658 [Cucumis melo][more]
gi|901812971|gb|KMZ67491.1|2.4e-0628.57hypothetical protein ZOSMA_266G00040 [Zostera marina][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G33030.1CSPI06G33030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G33030Cla014404Watermelon (97103) v1cpiwmB519
CSPI06G33030Csa6G511720Cucumber (Chinese Long) v2cpicuB313
CSPI06G33030ClCG01G021470Watermelon (Charleston Gray)cpiwcgB453
CSPI06G33030CsaV3_6G048490Cucumber (Chinese Long) v3cpicucB363
CSPI06G33030Cla97C01G021040Watermelon (97103) v2cpiwmbB433
CSPI06G33030Bhi03G000495Wax gourdcpiwgoB634
CSPI06G33030Cucsa.044770Cucumber (Gy14) v1cgycpiB028
CSPI06G33030CmaCh07G003470Cucurbita maxima (Rimu)cmacpiB893
CSPI06G33030CmoCh07G003380Cucurbita moschata (Rifu)cmocpiB873
CSPI06G33030Cp4.1LG19g08160Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G33030CsGy6G032620Cucumber (Gy14) v2cgybcpiB287
CSPI06G33030Carg07876Silver-seed gourdcarcpiB0672
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G33030Wild cucumber (PI 183967)cpicpiB039
CSPI06G33030Cucurbita maxima (Rimu)cmacpiB428
CSPI06G33030Cucurbita maxima (Rimu)cmacpiB689
CSPI06G33030Cucurbita moschata (Rifu)cmocpiB681
CSPI06G33030Cucumber (Chinese Long) v2cpicuB262
CSPI06G33030Melon (DHL92) v3.5.1cpimeB451
CSPI06G33030Melon (DHL92) v3.5.1cpimeB512
CSPI06G33030Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G33030Cucurbita pepo (Zucchini)cpecpiB528
CSPI06G33030Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G33030Bottle gourd (USVL1VR-Ls)cpilsiB447
CSPI06G33030Melon (DHL92) v3.6.1cpimedB496
CSPI06G33030Cucumber (Gy14) v2cgybcpiB038
CSPI06G33030Silver-seed gourdcarcpiB0446
CSPI06G33030Cucumber (Chinese Long) v3cpicucB318
CSPI06G33030Watermelon (97103) v2cpiwmbB436