CSPI06G29820 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G29820
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 25774942 .. 25775653 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCCATATCAGTACTAGATTTGACTTATGCTTCTATGTCCCATTCTTTTTCAAGAGAGTTATTTATTCTGGATGTGCTCTCGTCTACAAGGGCCATCCTTTGTTTGTGAGAGAGAATGATGATTGGAAACCTAACTCGTCTCTCTACCTCTTTCAAGAGTTTTCCAACTCGTTCGGTTGGTTTTTCACAAATCACAATCTCAAATAACAATGTATATAAAAGTTAATGATTAATATCTTTTGTAGGTAAAGGTTTTTAAATATAATAAAAATAGTGGATTTATTTATAACAAAATTTTGTTTTTTCTCATGCGTATTGAATGAAAAGTGTGTAACGTTTGTAAATATTTTAAAACCCTTCTAATTGATATTCAGAACAATCTTTTATATATATATATATATATATATATTTATGGAAGATATAGGAATTTGAATATACAGAAGAGAGTTATAGATATCAAAAACCCTAAACAGTGGTGGAGGGGAAGGGAAAGGAAGATGAGGGTGGGAGAGCGCCGGAAGGAAAAGCAAAAGCTGAGAGTAACAGTAGAGCGAGCCGTGCGTGTCGTTCTGTGGAGCACGTCAGTGATGACTGGGCGAGTGAGGTTAGGATGGAAAAGGAGGAAATGGGGGGAGTGAAGAAAGGGGGGCGTGGGTATCCAAGCCTAAACAGTTCTACAGATTCTCAATTACGGACATTTCAGTAA

mRNA sequence

ATGGCCATCCATATCAGTACTAGATTTGACTTATGCTTCTATGTCCCATTCTTTTTCAAGAGAGTTATTTATTCTGGATGTGCTCTCGTCTACAAGGGCCATCCTTTGTTTGTGAGAGAGAATGATGATTGGAAACCTAACTCGTCTCTCTACCTCTTTCAAGAGTTTTCCAACTCGTTCGTGGTGGAGGGGAAGGGAAAGGAAGATGAGGGTGGGAGAGCGCCGGAAGGAAAAGCAAAAGCTGAGAGTAACAGTAGAGCGAGCCGTGCGTGTCGTTCTGTGGAGCACGTCAGTGATGACTGGGCGAGTGAGGTTAGGATGGAAAAGGAGGAAATGGGGGGAGTGAAGAAAGGGGGGCGTGGGTATCCAAGCCTAAACAGTTCTACAGATTCTCAATTACGGACATTTCAGTAA

Coding sequence (CDS)

ATGGCCATCCATATCAGTACTAGATTTGACTTATGCTTCTATGTCCCATTCTTTTTCAAGAGAGTTATTTATTCTGGATGTGCTCTCGTCTACAAGGGCCATCCTTTGTTTGTGAGAGAGAATGATGATTGGAAACCTAACTCGTCTCTCTACCTCTTTCAAGAGTTTTCCAACTCGTTCGTGGTGGAGGGGAAGGGAAAGGAAGATGAGGGTGGGAGAGCGCCGGAAGGAAAAGCAAAAGCTGAGAGTAACAGTAGAGCGAGCCGTGCGTGTCGTTCTGTGGAGCACGTCAGTGATGACTGGGCGAGTGAGGTTAGGATGGAAAAGGAGGAAATGGGGGGAGTGAAGAAAGGGGGGCGTGGGTATCCAAGCCTAAACAGTTCTACAGATTCTCAATTACGGACATTTCAGTAA
Homology
[Close]
BLAST of CSPI06G29820 vs. TrEMBL
Match: A0A0A0KLS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499020 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 2.9e-71
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 1   MAIHISTRFDLCFYVPFFFKRVIYSGCALVYKGHPLFVRENDDWKPNSSLYLFQEFSNSF 60
           MAIHIS RFDLCFYVPFFFKRVIYSGCALVYKG+PLFVRENDDWKPNSSLYLFQEFSNSF
Sbjct: 1   MAIHISARFDLCFYVPFFFKRVIYSGCALVYKGYPLFVRENDDWKPNSSLYLFQEFSNSF 60

Query: 61  VVEGKGKEDEGGRAPEGKAKAESNSRASRACRSVEHVSDDWASEVRMEKEEMGGVKKGGR 120
           VVEGKGKEDEGGRAPEGKAKAESNSRASRACRSVEHVSDDWASEVRMEKEEMGGVKKGGR
Sbjct: 61  VVEGKGKEDEGGRAPEGKAKAESNSRASRACRSVEHVSDDWASEVRMEKEEMGGVKKGGR 120

Query: 121 GYPSLNSSTDSQLRTFQ 138
           GYPSLNSSTDSQLRTFQ
Sbjct: 121 GYPSLNSSTDSQLRTFQ 137

[Close]
BLAST of CSPI06G29820 vs. NCBI nr
Match: gi|700193502|gb|KGN48706.1| (hypothetical protein Csa_6G499020 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 4.1e-71
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 1 

Query: 1   MAIHISTRFDLCFYVPFFFKRVIYSGCALVYKGHPLFVRENDDWKPNSSLYLFQEFSNSF 60
           MAIHIS RFDLCFYVPFFFKRVIYSGCALVYKG+PLFVRENDDWKPNSSLYLFQEFSNSF
Sbjct: 1   MAIHISARFDLCFYVPFFFKRVIYSGCALVYKGYPLFVRENDDWKPNSSLYLFQEFSNSF 60

Query: 61  VVEGKGKEDEGGRAPEGKAKAESNSRASRACRSVEHVSDDWASEVRMEKEEMGGVKKGGR 120
           VVEGKGKEDEGGRAPEGKAKAESNSRASRACRSVEHVSDDWASEVRMEKEEMGGVKKGGR
Sbjct: 61  VVEGKGKEDEGGRAPEGKAKAESNSRASRACRSVEHVSDDWASEVRMEKEEMGGVKKGGR 120

Query: 121 GYPSLNSSTDSQLRTFQ 138
           GYPSLNSSTDSQLRTFQ
Sbjct: 121 GYPSLNSSTDSQLRTFQ 137

The following BLAST results are available for this feature:
BLAST of CSPI06G29820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G29820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLS0_CUCSA2.9e-7198.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499020 PE=4 SV=1[more]
BLAST of CSPI06G29820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G29820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193502|gb|KGN48706.1|4.1e-7198.54hypothetical protein Csa_6G499020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G29820.1CSPI06G29820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G29820Csa6G499020Cucumber (Chinese Long) v2cpicuB313
CSPI06G29820CsaV3_6G045030Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G29820Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G29820Cucurbita pepo (Zucchini)cpecpiB121
CSPI06G29820Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G29820Cucurbita pepo (Zucchini)cpecpiB848
CSPI06G29820Cucurbita pepo (Zucchini)cpecpiB841
CSPI06G29820Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G29820Bottle gourd (USVL1VR-Ls)cpilsiB462
CSPI06G29820Bottle gourd (USVL1VR-Ls)cpilsiB485
CSPI06G29820Bottle gourd (USVL1VR-Ls)cpilsiB492
CSPI06G29820Melon (DHL92) v3.6.1cpimedB462
CSPI06G29820Melon (DHL92) v3.6.1cpimedB471
CSPI06G29820Melon (DHL92) v3.6.1cpimedB493
CSPI06G29820Cucumber (Gy14) v2cgybcpiB082
CSPI06G29820Cucumber (Gy14) v2cgybcpiB287
CSPI06G29820Silver-seed gourdcarcpiB0067
CSPI06G29820Silver-seed gourdcarcpiB0446
CSPI06G29820Silver-seed gourdcarcpiB0794
CSPI06G29820Cucumber (Chinese Long) v3cpicucB326
CSPI06G29820Cucumber (Chinese Long) v3cpicucB328
CSPI06G29820Watermelon (97103) v2cpiwmbB433
CSPI06G29820Watermelon (97103) v2cpiwmbB448
CSPI06G29820Watermelon (97103) v2cpiwmbB522
CSPI06G29820Watermelon (97103) v2cpiwmbB528
CSPI06G29820Wax gourdcpiwgoB631
CSPI06G29820Wax gourdcpiwgoB654
CSPI06G29820Wild cucumber (PI 183967)cpicpiB082
CSPI06G29820Wild cucumber (PI 183967)cpicpiB085
CSPI06G29820Wild cucumber (PI 183967)cpicpiB136
CSPI06G29820Watermelon (97103) v1cpiwmB519
CSPI06G29820Cucumber (Gy14) v1cgycpiB122
CSPI06G29820Cucumber (Gy14) v1cgycpiB248
CSPI06G29820Cucumber (Gy14) v1cgycpiB476
CSPI06G29820Cucurbita maxima (Rimu)cmacpiB195
CSPI06G29820Cucurbita maxima (Rimu)cmacpiB202
CSPI06G29820Cucurbita maxima (Rimu)cmacpiB689
CSPI06G29820Cucurbita maxima (Rimu)cmacpiB821
CSPI06G29820Cucurbita maxima (Rimu)cmacpiB893
CSPI06G29820Cucurbita moschata (Rifu)cmocpiB180
CSPI06G29820Cucurbita moschata (Rifu)cmocpiB188
CSPI06G29820Cucurbita moschata (Rifu)cmocpiB681
CSPI06G29820Cucurbita moschata (Rifu)cmocpiB804
CSPI06G29820Cucurbita moschata (Rifu)cmocpiB873
CSPI06G29820Cucumber (Chinese Long) v2cpicuB278
CSPI06G29820Cucumber (Chinese Long) v2cpicuB297
CSPI06G29820Melon (DHL92) v3.5.1cpimeB471
CSPI06G29820Melon (DHL92) v3.5.1cpimeB483
CSPI06G29820Melon (DHL92) v3.5.1cpimeB508
CSPI06G29820Watermelon (Charleston Gray)cpiwcgB451
CSPI06G29820Watermelon (Charleston Gray)cpiwcgB453
CSPI06G29820Watermelon (Charleston Gray)cpiwcgB538
CSPI06G29820Watermelon (97103) v1cpiwmB487
CSPI06G29820Watermelon (97103) v1cpiwmB554