CSPI06G26620 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G26620
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 23454792 .. 23455202 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATAATCAAATACAGGAATCACAACCCAAGGAAGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAGCAAAATTCAACAGTGTCACCGACCCGGCTAAGAATATGGCTAATGAAATGAAACTTCTCAAGAGTCAATTGCCACGTCTTTTAGAAAAGTATAAAAAAAACCCAAAAAACCAACCCAAGTTCTTTGTATCGAGCTCAAGTCCAATGGAGGGAGGAAAGACCAGTCTCTACATAAATAAGAGAAAATGGCGGGGGAAGGGAAAAAAAAGAAGAATTGGGGTAAAAGCAAAACAGATGTCAGTTGTTGTAGCGAAGAGGAAAAGAGCCTCGAGATCTGTGTTCGAAATTGTAAGCGCACGAGCGACAAACAAGAGCGGCGCGGTCCGATAA

mRNA sequence

ATGGGAATAATCAAATACAGGAATCACAACCCAAGGAAGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAGCAAAATTCAACAGTGTCACCGACCCGGCTAAGAATATGGCTAATGAAATGAAACTTCTCAAGAGTCAATTGCCACGTCTTTTAGAAAAGTATAAAAAAAACCCAAAAAACCAACCCAAGTTCTTTGTATCGAGCTCAAGTCCAATGGAGGGAGGAAAGACCAGTCTCTACATAAATAAGAGAAAATGGCGGGGGAAGGGAAAAAAAAGAAGAATTGGGGTAAAAGCAAAACAGATGTCAGTTGTTGTAGCGAAGAGGAAAAGAGCCTCGAGATCTGTGTTCGAAATTGTAAGCGCACGAGCGACAAACAAGAGCGGCGCGGTCCGATAA

Coding sequence (CDS)

ATGGGAATAATCAAATACAGGAATCACAACCCAAGGAAGCAAGGTTCGAAGGCTATACCTCGAGATCACCGCAAAGCAACAGCAAAATTCAACAGTGTCACCGACCCGGCTAAGAATATGGCTAATGAAATGAAACTTCTCAAGAGTCAATTGCCACGTCTTTTAGAAAAGTATAAAAAAAACCCAAAAAACCAACCCAAGTTCTTTGTATCGAGCTCAAGTCCAATGGAGGGAGGAAAGACCAGTCTCTACATAAATAAGAGAAAATGGCGGGGGAAGGGAAAAAAAAGAAGAATTGGGGTAAAAGCAAAACAGATGTCAGTTGTTGTAGCGAAGAGGAAAAGAGCCTCGAGATCTGTGTTCGAAATTGTAAGCGCACGAGCGACAAACAAGAGCGGCGCGGTCCGATAA
Homology
[Close]
BLAST of CSPI06G26620 vs. TrEMBL
Match: A0A0A0KKU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483510 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 53
          MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP
Sbjct: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 52

[Close]
BLAST of CSPI06G26620 vs. NCBI nr
Match: gi|700193167|gb|KGN48371.1| (hypothetical protein Csa_6G483510 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 53
          MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP
Sbjct: 1  MGIIKYRNHNPRKQGSKAIPRDHRKATAKFNSVTDPAKNMANEMKLLKSQLP 52

The following BLAST results are available for this feature:
BLAST of CSPI06G26620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G26620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKU3_CUCSA3.0e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483510 PE=4 SV=1[more]
BLAST of CSPI06G26620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G26620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193167|gb|KGN48371.1|4.3e-20100.00hypothetical protein Csa_6G483510 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G26620.1CSPI06G26620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 37..57
scor