CSPI06G25290 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G25290
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 22538692 .. 22539072 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTAAGCTCACCAGTCTTGTTGTAAGGAGGGCATGCGTGGCTTATCGAGTTGGAGCATGTGACTTTAATAGCGTTTGTAATATTATATCTATTTTCACTTAATTCAAGCTCCTCTTGTGATTTTATGATCTTATTTTGATTATTGTGCTCTATGTTTTGAGCAATTCGAAGGTAGAATGTGGTGATGATGTCGATTTGGAGCTAATTCGAGCAAAACGATGTCAACCGAAGCAAATGAGTAATGAAATGAAGCCAATTAGGCTTTTGTCTCGTAGCGCATCAATTGCCCTACGACGCTATGCGTGGTGTTGTAAGATAGAAGGGATTATTATTCACGAAAATGATGTGGCACCATCTCAGAGTGTCACGGTACTC

mRNA sequence

ATGGGTTTTAAGCTCACCAGTCTTGTTGTAAGGAGGGCATGCGTGGCTTATCGAGTTGGAGCATGTGACTTTAATAGCGTAGAATGTGGTGATGATGTCGATTTGGAGCTAATTCGAGCAAAACGATGTCAACCGAAGCAAATGAGTAATGAAATGAAGCCAATTAGGCTTTTGTCTCGTAGCGCATCAATTGCCCTACGACGCTATGCGTGGTGTTGTAAGATAGAAGGGATTATTATTCACGAAAATGATGTGGCACCATCTCAGAGTGTCACGGTACTC

Coding sequence (CDS)

ATGGGTTTTAAGCTCACCAGTCTTGTTGTAAGGAGGGCATGCGTGGCTTATCGAGTTGGAGCATGTGACTTTAATAGCGTAGAATGTGGTGATGATGTCGATTTGGAGCTAATTCGAGCAAAACGATGTCAACCGAAGCAAATGAGTAATGAAATGAAGCCAATTAGGCTTTTGTCTCGTAGCGCATCAATTGCCCTACGACGCTATGCGTGGTGTTGTAAGATAGAAGGGATTATTATTCACGAAAATGATGTGGCACCATCTCAGAGTGTCACGGTACTC
Homology
[Close]
BLAST of CSPI06G25290 vs. TrEMBL
Match: A0A0A0KKF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G450950 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.6e-43
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 1  MGFKLTSLVVRRACVAYRVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60
          MGFKLTSLVVRRAC+AY VGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR
Sbjct: 1  MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60

Query: 61 SASIALRRYAWCCKIEGIIIHENDVAPSQSVTVL 95
          SA I LRRYAWCCKIE IIIHENDVAPS SVTVL
Sbjct: 61 SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL 94

[Close]
BLAST of CSPI06G25290 vs. NCBI nr
Match: gi|700193037|gb|KGN48241.1| (hypothetical protein Csa_6G450950 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 9.5e-43
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 1  MGFKLTSLVVRRACVAYRVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60
          MGFKLTSLVVRRAC+AY VGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR
Sbjct: 1  MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60

Query: 61 SASIALRRYAWCCKIEGIIIHENDVAPSQSVTVL 95
          SA I LRRYAWCCKIE IIIHENDVAPS SVTVL
Sbjct: 61 SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL 94

The following BLAST results are available for this feature:
BLAST of CSPI06G25290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G25290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKF0_CUCSA6.6e-4393.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G450950 PE=4 SV=1[more]
BLAST of CSPI06G25290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G25290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193037|gb|KGN48241.1|9.5e-4393.62hypothetical protein Csa_6G450950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G25290.1CSPI06G25290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G25290Csa6G450950Cucumber (Chinese Long) v2cpicuB313
CSPI06G25290CsaV3_6G040480Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G25290Bottle gourd (USVL1VR-Ls)cpilsiB423
CSPI06G25290Bottle gourd (USVL1VR-Ls)cpilsiB440
CSPI06G25290Bottle gourd (USVL1VR-Ls)cpilsiB452
CSPI06G25290Melon (DHL92) v3.6.1cpimedB420
CSPI06G25290Melon (DHL92) v3.6.1cpimedB473
CSPI06G25290Melon (DHL92) v3.6.1cpimedB497
CSPI06G25290Cucumber (Gy14) v2cgybcpiB140
CSPI06G25290Cucumber (Gy14) v2cgybcpiB287
CSPI06G25290Cucumber (Gy14) v2cgybcpiB290
CSPI06G25290Silver-seed gourdcarcpiB0173
CSPI06G25290Silver-seed gourdcarcpiB0271
CSPI06G25290Silver-seed gourdcarcpiB0282
CSPI06G25290Silver-seed gourdcarcpiB0845
CSPI06G25290Silver-seed gourdcarcpiB0847
CSPI06G25290Silver-seed gourdcarcpiB0965
CSPI06G25290Cucumber (Chinese Long) v3cpicucB334
CSPI06G25290Cucumber (Chinese Long) v3cpicucB367
CSPI06G25290Watermelon (97103) v2cpiwmbB438
CSPI06G25290Watermelon (97103) v2cpiwmbB442
CSPI06G25290Watermelon (97103) v2cpiwmbB458
CSPI06G25290Watermelon (97103) v2cpiwmbB479
CSPI06G25290Wax gourdcpiwgoB532
CSPI06G25290Wax gourdcpiwgoB619
CSPI06G25290Wax gourdcpiwgoB635
CSPI06G25290Wild cucumber (PI 183967)cpicpiB125
CSPI06G25290Wild cucumber (PI 183967)cpicpiB186
CSPI06G25290Cucumber (Gy14) v1cgycpiB085
CSPI06G25290Cucumber (Gy14) v1cgycpiB571
CSPI06G25290Cucurbita maxima (Rimu)cmacpiB271
CSPI06G25290Cucurbita maxima (Rimu)cmacpiB689
CSPI06G25290Cucurbita maxima (Rimu)cmacpiB855
CSPI06G25290Cucurbita maxima (Rimu)cmacpiB894
CSPI06G25290Cucurbita moschata (Rifu)cmocpiB259
CSPI06G25290Cucurbita moschata (Rifu)cmocpiB639
CSPI06G25290Cucurbita moschata (Rifu)cmocpiB681
CSPI06G25290Cucurbita moschata (Rifu)cmocpiB838
CSPI06G25290Cucurbita moschata (Rifu)cmocpiB874
CSPI06G25290Cucumber (Chinese Long) v2cpicuB284
CSPI06G25290Cucumber (Chinese Long) v2cpicuB315
CSPI06G25290Melon (DHL92) v3.5.1cpimeB426
CSPI06G25290Melon (DHL92) v3.5.1cpimeB485
CSPI06G25290Melon (DHL92) v3.5.1cpimeB513
CSPI06G25290Watermelon (Charleston Gray)cpiwcgB444
CSPI06G25290Watermelon (Charleston Gray)cpiwcgB463
CSPI06G25290Watermelon (Charleston Gray)cpiwcgB488
CSPI06G25290Watermelon (97103) v1cpiwmB467
CSPI06G25290Watermelon (97103) v1cpiwmB524
CSPI06G25290Watermelon (97103) v1cpiwmB534
CSPI06G25290Cucurbita pepo (Zucchini)cpecpiB081
CSPI06G25290Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G25290Cucurbita pepo (Zucchini)cpecpiB627
CSPI06G25290Cucurbita pepo (Zucchini)cpecpiB762
CSPI06G25290Cucurbita pepo (Zucchini)cpecpiB878