CSPI06G19950 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G19950
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LRR and NB-ARC domains-containing disease resistance protein, putative
Location	Chr6 : 17899617 .. 17899814 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAATCAATTTTGTTTAGTCTTTCAGCAAATATTGCAACCAAATTGGGTTCTTTCTCGCTCCTAGAGCTTGGATTGTTGTGGATCGGTTTCCATGAAGAGCTTGACAAACTGAAAGACACTCTTTTCGCCATCCAAGTAGTACTTCTCGACGCAGAACATAAGCAGTACAAGAGTTATGCGGTGAAGGAATAG

mRNA sequence

ATGGCACAATCAATTTTGTTTAGTCTTTCAGCAAATATTGCAACCAAATTGGGTTCTTTCTCGCTCCTAGAGCTTGGATTGTTGTGGATCGGTTTCCATGAAGAGCTTGACAAACTGAAAGACACTCTTTTCGCCATCCAAGTAGTACTTCTCGACGCAGAACATAAGCAGTACAAGAGTTATGCGGTGAAGGAATAG

Coding sequence (CDS)

ATGGCACAATCAATTTTGTTTAGTCTTTCAGCAAATATTGCAACCAAATTGGGTTCTTTCTCGCTCCTAGAGCTTGGATTGTTGTGGATCGGTTTCCATGAAGAGCTTGACAAACTGAAAGACACTCTTTTCGCCATCCAAGTAGTACTTCTCGACGCAGAACATAAGCAGTACAAGAGTTATGCGGTGAAGGAATAG

Homology

[Close]

BLAST of CSPI06G19950 vs. TrEMBL
Match: A0A0A0KDA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G375720 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS
Sbjct: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60

Query: 61 YAVKE 66
          YAVKE
Sbjct: 61 YAVKE 65

[Close]

BLAST of CSPI06G19950 vs. TrEMBL
Match: A0A0A0LZ44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572380 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.8e-18
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MA+SILFSL+ANIATKLGS +L +LGLLW G HEE+DKL+DTL AIQ VL DAE KQYKS
Sbjct: 1  MAESILFSLAANIATKLGSLALQDLGLLWTGIHEEIDKLRDTLSAIQAVLHDAEQKQYKS 60

Query: 61 YAVKE 66
           AVKE
Sbjct: 61 SAVKE 65

[Close]

BLAST of CSPI06G19950 vs. TrEMBL
Match: A0A0A0KIT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G375730 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-13
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MA+SIL SL+ +I TKLGSF+L +LGLLW GFH+ELDKLK T+ A++ VLLDAE KQ KS
Sbjct: 1  MAESILCSLAGSIITKLGSFALQDLGLLW-GFHDELDKLKGTVSALEAVLLDAEEKQSKS 60

Query: 61 YAVKE 66
           AVK+
Sbjct: 61 RAVKD 64

[Close]

BLAST of CSPI06G19950 vs. TrEMBL
Match: A0A0A0K9P7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425940 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-10
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MA S+LF+++A++ TKLGS +L ELG LW G ++ELDKL++TL AI+ VLLDAE +Q KS
Sbjct: 1  MADSVLFNVAASVITKLGSSALRELGSLW-GVNDELDKLQNTLSAIKAVLLDAEEQQSKS 60

Query: 61 YAVKE 66
          + VK+
Sbjct: 61 HTVKD 64

[Close]

BLAST of CSPI06G19950 vs. TrEMBL
Match: A0A0A0KBD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420890 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-10
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MA++IL++++A+I  KLGS +L ELGLLW G ++ELDKLK +L AIQ VLLDAE +Q KS
Sbjct: 1  MAEAILYNVTADIIFKLGSSALQELGLLW-GVNDELDKLKHSLSAIQAVLLDAEEQQSKS 60

Query: 61 YAVK 65
           AVK
Sbjct: 61 LAVK 63

[Close]

BLAST of CSPI06G19950 vs. NCBI nr
Match: gi|700192476|gb|KGN47680.1| (hypothetical protein Csa_6G375720 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS
Sbjct: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60

Query: 61 YAVKE 66
          YAVKE
Sbjct: 61 YAVKE 65

[Close]

BLAST of CSPI06G19950 vs. NCBI nr
Match: gi|778722268|ref|XP_011658447.1| (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 8    SLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKSYAVKE 66
            SLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKSYAVKE
Sbjct: 1031 SLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKSYAVKE 1088

[Close]

BLAST of CSPI06G19950 vs. NCBI nr
Match: gi|659099641|ref|XP_008450703.1| (PREDICTED: putative disease resistance protein RGA4 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-21
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MA+SILF+L+ANIATKLGSF L ELGLLW GFHEELDKLKDTL AIQ VLLDAE KQYKS
Sbjct: 1  MAESILFTLAANIATKLGSFPLHELGLLWTGFHEELDKLKDTLSAIQAVLLDAEEKQYKS 60

Query: 61 YAVKE 66
          YAVKE
Sbjct: 61 YAVKE 65

[Close]

BLAST of CSPI06G19950 vs. NCBI nr
Match: gi|700211021|gb|KGN66117.1| (hypothetical protein Csa_1G572380 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MA+SILFSL+ANIATKLGS +L +LGLLW G HEE+DKL+DTL AIQ VL DAE KQYKS
Sbjct: 1  MAESILFSLAANIATKLGSLALQDLGLLWTGIHEEIDKLRDTLSAIQAVLHDAEQKQYKS 60

Query: 61 YAVKE 66
           AVKE
Sbjct: 61 SAVKE 65

[Close]

BLAST of CSPI06G19950 vs. NCBI nr
Match: gi|778662590|ref|XP_011659913.1| (PREDICTED: putative disease resistance protein RGA4 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1  MAQSILFSLSANIATKLGSFSLLELGLLWIGFHEELDKLKDTLFAIQVVLLDAEHKQYKS 60
          MA+SILFSL+ANIATKLGS +L +LGLLW G HEE+DKL+DTL AIQ VL DAE KQYKS
Sbjct: 1  MAESILFSLAANIATKLGSLALQDLGLLWTGIHEEIDKLRDTLSAIQAVLHDAEQKQYKS 60

Query: 61 YAVKE 66
           AVKE
Sbjct: 61 SAVKE 65

The following BLAST results are available for this feature:

BLAST of CSPI06G19950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G19950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDA1_CUCSA	1.4e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G375720 PE=4 SV=1	[more]
A0A0A0LZ44_CUCSA	8.8e-18	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572380 PE=4 SV=1	[more]
A0A0A0KIT2_CUCSA	2.2e-13	67.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G375730 PE=3 SV=1	[more]
A0A0A0K9P7_CUCSA	1.8e-10	58.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425940 PE=3 SV=1	[more]
A0A0A0KBD9_CUCSA	3.0e-10	62.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420890 PE=3 SV=1	[more]

BLAST of CSPI06G19950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G19950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192476\|gb\|KGN47680.1\|	1.9e-26	100.00	hypothetical protein Csa_6G375720 [Cucumis sativus]	[more]
gi\|778722268\|ref\|XP_011658447.1\|	5.8e-23	100.00	PREDICTED: disease resistance protein RGA2-like [Cucumis sativus]	[more]
gi\|659099641\|ref\|XP_008450703.1\|	4.2e-21	86.15	PREDICTED: putative disease resistance protein RGA4 [Cucumis melo]	[more]
gi\|700211021\|gb\|KGN66117.1\|	1.3e-17	76.92	hypothetical protein Csa_1G572380 [Cucumis sativus]	[more]
gi\|778662590\|ref\|XP_011659913.1\|	1.3e-17	76.92	PREDICTED: putative disease resistance protein RGA4 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19950.1	CSPI06G19950.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G19950	Csa6G375720	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G19950	CsaV3_6G033980	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G19950	Cucsa.328080	Cucumber (Gy14) v1	cgycpiB492
CSPI06G19950	CsGy6G019440	Cucumber (Gy14) v2	cgybcpiB287

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G19950	Melon (DHL92) v3.6.1	cpimedB458
CSPI06G19950	Watermelon (97103) v2	cpiwmbB523
CSPI06G19950	Wax gourd	cpiwgoB577
CSPI06G19950	Cucurbita maxima (Rimu)	cmacpiB779
CSPI06G19950	Cucurbita moschata (Rifu)	cmocpiB770
CSPI06G19950	Melon (DHL92) v3.5.1	cpimeB466
CSPI06G19950	Watermelon (Charleston Gray)	cpiwcgB533
CSPI06G19950	Watermelon (97103) v1	cpiwmB482
CSPI06G19950	Cucurbita pepo (Zucchini)	cpecpiB200
CSPI06G19950	Cucurbita pepo (Zucchini)	cpecpiB462
CSPI06G19950	Bottle gourd (USVL1VR-Ls)	cpilsiB489