CSPI06G12820 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G12820
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Reticulon-like protein
Location	Chr6 : 11200616 .. 11202929 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAAAGGAAGCTTTCTCCCACCCAACGGCTCGATGGGCATGGGCTTCAGCGGATGGGCACTACCGAAATTTCCTCCTTCAAAAATCAAATTCAAAACCACGACTTGAACTTAAACATTTTCAAAAATCCGATTCTGTACTCTAAGATCTTCCATTAAACCAATCTCCTCCATGGATTTCACTCCTCCTTCTCACCGATCCGACCCTCGATCTCGCACAAAATCATCCTCACGCCTCGCCGTTGAAGCCGACCAAACACCCCATTTCTCAGTCGACGCCATTTCTTCGCCGCGAAGGAAAACCCCTTCCCCTTCCATCCAGGACATCTTGTTTCTTTCCCCTTCCACTGTCGGCAAATCCAGGTCCCGTCTCGTGGATCGCTTCGAAATGAACGACGAAGTTCCGGAGCCCGCCGTCTCACGGAGAAGGTGTAGAAACCGTGGCCCCCAATTGGGTCTTATGGGTTGTGCTTCTCCGAGGAGTATTAGAAGGTCAAGAAGACGATCTGAGGTGGAGACTAGAGAAGAGAGAGATTTGTGTTTAGCGGAAGAGTTTGTGAAGGCTAGAAAGAGGAAACAGAGCGGGAGGTCGAAGAAGGAGAAGCTCAGTTTGGTTCCAGTTCCATCGACGCCTTCGAGTTCAACAACTCCAAGTATATCTAAGATTTCTCTATTTGGTGTTCTTGATTGATTTGGTTTCTATCTGTTCTGATTTGATTTGTATGTGTTTAATAGAACTTGATAATGATGAGAATGGTAGTTTGGATCAAATTGGGCAGCTGATAACTGATCTGATAATGTGGAAAGATGTGGCTAAGTCAAGCCTTTGGTTTGGACTTGGCTCTTTGTTTTTCTTCTCCACTTGCTTCACTCGAGGAGTTAGCTTTAGGTCTGCGTCTTAAACTCGAATAAATCGTTAACCATTGTACATTTCTGCGAATGTTTGATCATCTATTAACAGCTCTAATATTGATAATTACAGCATTTTCTCAGCAATTTCCCAGCTTGGACTTCTGTTTTTGGGTCTTGCATTTGTCTCCAATTCAATCTGTCAAAGGTACAGTTTCTAATGAATCTTTAATCACCTCAAAATCTGTTAAGAGAGTTCCTAATGTTTATAAGATAGATGGTCATTCCTCCCATTATTAATTGGGTTTGATAAAATCCAATTGATTCTTGTTATAAGGTAAAATTTGAAATTGTAGGAACAATGATGAAAAGAAACATAAAGACTTCAAGCTTAAAGAAGATGACATAAAACGCTTGGTGAAACTGGTTCTTCCGGCTGCAAATTTCGCCATTTTCAAGATTCGGGAGCTTTTCTGTGGAGAGGCAGAGATGACCTTGAAAGTAACCATAAAACTCAGCATCTATGATCATTGAACAATTTCAATTAACTAATCATATAAACTAAACTGGTTGGATGTTTAATGGATTTAAGTATTTCTGGGGTTTTTCAGGTAGCTCCATTTCTCATTTTAGGAGCTGAATATGGATATCTTATTACTCTTAGAAGACTCTGTGCAATTGGTATAATACAACAGAAAAATCATTTCAGAACTTGCTTAAAAATCTCTCGTTGATTTATGATCGCTACTTTAATCTTCATTCACTTTCAGGGTTCTTTAGCAGTTTCTCTGTGCCAAAGCTGTATACATGTTACCAGATACAGATAAACAGCAAAGGTAAATAGGAATTCTAGGAAACACCCACTTAAATATAGCTACTTCTGCATTTTGTATGTAAAATGTGATGCTGAAAAAGAAGAATGATGATGGTGGTGGTATTTTACAGTGGATGCCGTAAAACAATGGATGTTTGAAGCATGGGAAGCTTGCTCACATAAGAAGGTTGTGATAGGATCAGCAGCCACAGCGTTTTGGAACTTTTCTTCCCTGAAGACCCGAATTTTCACAGGTAACAATCATGTTAGATGATCTTAGTTTCTTCAATCTCCATTGTTCTAGCTTAATAAAGGATGATTATTAAGCTCTGTCAGGTTTTGTTTGTTACAGCTTTCATTGTTCTAGTCATAGTTCGATACTGCCGGCAATTTATAGTGTCGTCAGAACCGGAAATTGAAGAAGTACAAGAGGATGAGAAGCAGGCATTGGTTGTTGTAGAAGCAGGCAAGGAGGAGGAGCAGAAGCAAGTTCAAGTGGTGGCGGAACCCCATTGTTAGCTGTGATTTGGCTTTAGAGTTTTTTTTACTGCCAACACTGAAGTGTATAATAAACAAATGGGTTGTTTAGAGCTTTTTTACCTCTTAAATTTAATTGATTGATTTAAAGCTCAAACATCTTTTGGCCAGAAAA

mRNA sequence

ATGGATTTCACTCCTCCTTCTCACCGATCCGACCCTCGATCTCGCACAAAATCATCCTCACGCCTCGCCGTTGAAGCCGACCAAACACCCCATTTCTCAGTCGACGCCATTTCTTCGCCGCGAAGGAAAACCCCTTCCCCTTCCATCCAGGACATCTTGTTTCTTTCCCCTTCCACTGTCGGCAAATCCAGGTCCCGTCTCGTGGATCGCTTCGAAATGAACGACGAAGTTCCGGAGCCCGCCGTCTCACGGAGAAGGTGTAGAAACCGTGGCCCCCAATTGGGTCTTATGGGTTGTGCTTCTCCGAGGAGTATTAGAAGGTCAAGAAGACGATCTGAGGTGGAGACTAGAGAAGAGAGAGATTTGTGTTTAGCGGAAGAGTTTGTGAAGGCTAGAAAGAGGAAACAGAGCGGGAGGTCGAAGAAGGAGAAGCTCAGTTTGGTTCCAGTTCCATCGACGCCTTCGAGTTCAACAACTCCAAAACTTGATAATGATGAGAATGGTAGTTTGGATCAAATTGGGCAGCTGATAACTGATCTGATAATGTGGAAAGATGTGGCTAAGTCAAGCCTTTGGTTTGGACTTGGCTCTTTGTTTTTCTTCTCCACTTGCTTCACTCGAGGAGTTAGCTTTAGCATTTTCTCAGCAATTTCCCAGCTTGGACTTCTGTTTTTGGGTCTTGCATTTGTCTCCAATTCAATCTGTCAAAGGAACAATGATGAAAAGAAACATAAAGACTTCAAGCTTAAAGAAGATGACATAAAACGCTTGGTGAAACTGGTTCTTCCGGCTGCAAATTTCGCCATTTTCAAGATTCGGGAGCTTTTCTGTGGAGAGGCAGAGATGACCTTGAAAGTAGCTCCATTTCTCATTTTAGGAGCTGAATATGGATATCTTATTACTCTTAGAAGACTCTGTGCAATTGGGTTCTTTAGCAGTTTCTCTGTGCCAAAGCTGTATACATGTTACCAGATACAGATAAACAGCAAAGTGGATGCCGTAAAACAATGGATGTTTGAAGCATGGGAAGCTTGCTCACATAAGAAGGTTGTGATAGGATCAGCAGCCACAGCGTTTTGGAACTTTTCTTCCCTGAAGACCCGAATTTTCACAGCTTTCATTGTTCTAGTCATAGTTCGATACTGCCGGCAATTTATAGTGTCGTCAGAACCGGAAATTGAAGAAGTACAAGAGGATGAGAAGCAGGCATTGGTTGTTGTAGAAGCAGGCAAGGAGGAGGAGCAGAAGCAAGTTCAAGTGGTGGCGGAACCCCATTGTTAG

Coding sequence (CDS)

ATGGATTTCACTCCTCCTTCTCACCGATCCGACCCTCGATCTCGCACAAAATCATCCTCACGCCTCGCCGTTGAAGCCGACCAAACACCCCATTTCTCAGTCGACGCCATTTCTTCGCCGCGAAGGAAAACCCCTTCCCCTTCCATCCAGGACATCTTGTTTCTTTCCCCTTCCACTGTCGGCAAATCCAGGTCCCGTCTCGTGGATCGCTTCGAAATGAACGACGAAGTTCCGGAGCCCGCCGTCTCACGGAGAAGGTGTAGAAACCGTGGCCCCCAATTGGGTCTTATGGGTTGTGCTTCTCCGAGGAGTATTAGAAGGTCAAGAAGACGATCTGAGGTGGAGACTAGAGAAGAGAGAGATTTGTGTTTAGCGGAAGAGTTTGTGAAGGCTAGAAAGAGGAAACAGAGCGGGAGGTCGAAGAAGGAGAAGCTCAGTTTGGTTCCAGTTCCATCGACGCCTTCGAGTTCAACAACTCCAAAACTTGATAATGATGAGAATGGTAGTTTGGATCAAATTGGGCAGCTGATAACTGATCTGATAATGTGGAAAGATGTGGCTAAGTCAAGCCTTTGGTTTGGACTTGGCTCTTTGTTTTTCTTCTCCACTTGCTTCACTCGAGGAGTTAGCTTTAGCATTTTCTCAGCAATTTCCCAGCTTGGACTTCTGTTTTTGGGTCTTGCATTTGTCTCCAATTCAATCTGTCAAAGGAACAATGATGAAAAGAAACATAAAGACTTCAAGCTTAAAGAAGATGACATAAAACGCTTGGTGAAACTGGTTCTTCCGGCTGCAAATTTCGCCATTTTCAAGATTCGGGAGCTTTTCTGTGGAGAGGCAGAGATGACCTTGAAAGTAGCTCCATTTCTCATTTTAGGAGCTGAATATGGATATCTTATTACTCTTAGAAGACTCTGTGCAATTGGGTTCTTTAGCAGTTTCTCTGTGCCAAAGCTGTATACATGTTACCAGATACAGATAAACAGCAAAGTGGATGCCGTAAAACAATGGATGTTTGAAGCATGGGAAGCTTGCTCACATAAGAAGGTTGTGATAGGATCAGCAGCCACAGCGTTTTGGAACTTTTCTTCCCTGAAGACCCGAATTTTCACAGCTTTCATTGTTCTAGTCATAGTTCGATACTGCCGGCAATTTATAGTGTCGTCAGAACCGGAAATTGAAGAAGTACAAGAGGATGAGAAGCAGGCATTGGTTGTTGTAGAAGCAGGCAAGGAGGAGGAGCAGAAGCAAGTTCAAGTGGTGGCGGAACCCCATTGTTAG

Homology

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BLAST of CSPI06G12820 vs. Swiss-Prot
Match: RTNLQ_ARATH (Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.4e-93
Identity = 216/426 (50.70%), Postives = 287/426 (67.37%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAI-SSPRRKTPSPS----IQDILFL 60
           M+ TPP HRS+    TKS+SRL  ++   P+ S+D + SSP   TP+PS    ++DIL L
Sbjct: 1   MESTPPYHRSN----TKSASRLQ-DSSNPPNLSLDLVLSSPN--TPNPSSPVPLRDILLL 60

Query: 61  SPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVE 120
            PS + KSR+RL DR EM  E    AV R+R + +G Q  L+  ASPR+ RRSRRRSE  
Sbjct: 61  PPSPLRKSRTRLSDRLEMTSE-DAMAVVRKRGKGKGGQKSLL--ASPRNPRRSRRRSEAV 120

Query: 121 TREERDLCLAEEFVKA--RKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQI 180
             +E +L + EE VK   RKRK +GR KK+K S     S P   ++  L N     L+ I
Sbjct: 121 EEKEANLVI-EEIVKLPPRKRKTNGRPKKDKQS-----SAPPLCSSSDLPNTCQSDLNLI 180

Query: 181 GQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNS 240
           G++I+DL+MW+DVAKS+LWFG G L F S+CF +GV+FS+FSA+S LGL+ L  +F+SN+
Sbjct: 181 GEIISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNT 240

Query: 241 ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300
           +CQR N++ K + F + EDD+ R  + VLPA NF I K  ELF GE  MTLKV PFL+LG
Sbjct: 241 LCQRKNEDTK-RAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLG 300

Query: 301 AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG 360
           AEYG+LITL RL A GFF SF++PKLY+CY  QI+ KV+ VK  + EAW  CSHKK++ G
Sbjct: 301 AEYGHLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGEAWGVCSHKKILAG 360

Query: 361 SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQ-EDEKQALVVVEAGKE 419
           SA TAFWN +S++TRIF  FI+LVI RY RQ +  +  E+E V+ E E++ L   E    
Sbjct: 361 SAVTAFWNLTSIRTRIFAVFIILVIFRYRRQNLQLTPEEVEPVENEQEEETLPQEEETVP 409

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BLAST of CSPI06G12820 vs. Swiss-Prot
Match: RTNLR_ARATH (Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2)

HSP 1 Score: 333.2 bits (853), Expect = 4.2e-90
Identity = 202/421 (47.98%), Postives = 280/421 (66.51%), Query Frame = 1


Query: 4   TPPSHRSDPRS--RTKSSSRLAVEA---------------DQTPHFSVDAISSPRRKTPS 63
           TPPS RS+ RS  R   +++  V++               + TP+ S  ++SSP      
Sbjct: 6   TPPSLRSNTRSALRLARNNKTLVKSHIPSLDLVLLSPKNNNGTPYPSPVSLSSPSSPV-- 65

Query: 64  PSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIR 123
            ++++IL LSPS + KSR+RL +RF+M  E  E AV+ RR + +G Q GL+   SPR+ R
Sbjct: 66  -TLREILLLSPSPLRKSRTRLSNRFDM--EAAEAAVTARRSKTKGGQNGLLASPSPRNFR 125

Query: 124 RSRRRSE--VETREERDLCLA---EEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPK 183
           RSR RSE  V+T+E  +  +    E+    RK+K+ GRSKKEK S VP+ ++PS S+   
Sbjct: 126 RSRLRSEAMVDTKENTEPIVVVTDEKKQNQRKQKKLGRSKKEKHSSVPLLASPSPSSDQP 185

Query: 184 LDNDENGSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFT-RGVSFSIFSAISQL 243
            D  + G L++I + I+DLIMW+DVAKS+LWFG G + F STCF  +G +FS+FSAIS L
Sbjct: 186 QDVCQ-GDLERIRENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSVFSAISYL 245

Query: 244 GLLFLGLAFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEA 303
           GLLFLG++F+SN++ QR  +E + ++ KL EDD+ R+ + +LP  N AI K  ELF GE 
Sbjct: 246 GLLFLGVSFLSNTLRQRVTEEAR-RELKLSEDDVLRIARRMLPITNLAISKTSELFSGEP 305

Query: 304 EMTLKVAPFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFE 363
            MTLKVAPF+++GAEYGYLITL RLCA GFF SF++PKLY+CY  Q+N KV+  ++   E
Sbjct: 306 AMTLKVAPFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFVE 365

Query: 364 AWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDE 402
           AW  C+HKK V GSA TAFWN +SLKTR    FI++V++RY RQ +     + EE ++ E
Sbjct: 366 AWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVVVIRYRRQNLQLDSEDEEEKKQQE 419

[Close]

BLAST of CSPI06G12820 vs. Swiss-Prot
Match: RTNLS_ARATH (Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-36
Identity = 92/284 (32.39%), Postives = 165/284 (58.10%), Query Frame = 1


Query: 134 RKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIG-QLITDLIMWKDVAKSSLW 193
           RK S    K   S+   P   +SST    + ++N +  Q   Q + DL+MW+DV++S+L 
Sbjct: 186 RKISPPVIKRATSVYSAPPNSTSSTDRFAEQEDNFTHSQSKLQSLVDLVMWRDVSRSTLV 245

Query: 194 FGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNSICQRNN-DEKKHKDFKLKE 253
           FG G+    S+ +   ++FS  S ++ +GL++LGL FV  S+  R   +E++HK   ++E
Sbjct: 246 FGFGTFLIISSSYANDLNFSFISVVAYMGLIYLGLMFVLKSLIHRGMVEEERHKVVGVRE 305

Query: 254 DDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYLITLRRLCAIGFF 313
           +D+KR+++L++P  N ++ ++R LF G+   TLK+   L + A  G  ITL  L   GF 
Sbjct: 306 EDVKRMLRLIMPYLNESLHQLRALFSGDPSTTLKMGVVLFVLARCGSSITLWNLAKFGFL 365

Query: 314 SSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFT 373
            +F++PK++  Y    ++  +   +   +AWE+C+HKK V  +  T  WN SS+  R++ 
Sbjct: 366 GAFTIPKIFISYSTHFSAYGNFWMRRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWA 425

Query: 374 AFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEEEQ 416
           AF++LV  RY +  ++ +  + ++ ++D ++     EA +E+EQ
Sbjct: 426 AFMLLVAFRYYQHKMIWTTDQADDDEDDNEEE----EAEEEKEQ 465

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BLAST of CSPI06G12820 vs. TrEMBL
Match: A0A0A0KBW7_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 2.0e-224
Identity = 418/433 (96.54%), Postives = 418/433 (96.54%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60
           MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV
Sbjct: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60

Query: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER 120
           GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER 120

Query: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL 180
           DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL
Sbjct: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL 180

Query: 181 IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSF-------SIFSAISQLGLLFLGLAFVSNS 240
           IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSF       SIFSAISQLGLLFLGLAFVSNS
Sbjct: 181 IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSSNIDNYSIFSAISQLGLLFLGLAFVSNS 240

Query: 241 ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300
           ICQR N       FKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG
Sbjct: 241 ICQRYN-------FKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300

Query: 301 AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG 360
           AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG
Sbjct: 301 AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG 360

Query: 361 SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEE 420
           SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEE
Sbjct: 361 SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEE 420

Query: 421 EQKQVQVVAEPHC 427
           EQKQVQVVAEPHC
Sbjct: 421 EQKQVQVVAEPHC 426

[Close]

BLAST of CSPI06G12820 vs. TrEMBL
Match: A0A067JJE5_JATCU (Reticulon-like protein OS=Jatropha curcas GN=JCGZ_25748 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 3.5e-123
Identity = 259/436 (59.40%), Postives = 321/436 (73.62%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLA-----VEADQTPHFSVDAI-SSPRRKTPSPS------ 60
           MD TPPSH+S+P S+TKS+SRLA     VE ++ PH S+D I SS +R +P+PS      
Sbjct: 1   MDSTPPSHKSNPNSQTKSASRLARITYSVENEEPPHLSLDLIHSSAKRTSPTPSALSLKS 60

Query: 61  ------IQDILFLSPSTVGKSRSRLVDRFEMNDEVP-EPAVSRRRCRNRGPQLGLMGCAS 120
                  QD+L LSPS   K+R+RL DR EM +E   EP  SRRRC+++   L  MGCAS
Sbjct: 61  STNSLSFQDLLLLSPSP-RKARTRLADRLEMAEEAAMEPTGSRRRCKSKAAHLSSMGCAS 120

Query: 121 PRSIRRSRRRSEVETREERDLC-LAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTP 180
           PR  RRSRRRSE+E +E++DL  L EE  K RKR+ SGRSKKEKLSLVP  S PSSS +P
Sbjct: 121 PRHSRRSRRRSEIEIKEDKDLVGLVEEIGKVRKRRHSGRSKKEKLSLVP--SVPSSSPSP 180

Query: 181 KLDNDENGSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQL 240
           K++  +  +LD+IG +I DLIMWKDVAKSSLWFG G L F S+CF +G+SFS+ SAISQL
Sbjct: 181 KVEAGDESNLDRIGIIIYDLIMWKDVAKSSLWFGFGCLCFLSSCFAKGISFSMLSAISQL 240

Query: 241 GLLFLGLAFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEA 300
           GLL LG +F+SNSIC+R+N EK+  +FKLKE+DI +L +L+LP AN AI K RELF GE 
Sbjct: 241 GLLLLGASFISNSICRRSNVEKR-SNFKLKEEDILKLGRLILPPANLAISKTRELFSGEP 300

Query: 301 EMTLKVAPFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFE 360
            MTLKV PFL+LGAEYG+L+TLRRLCA+G F  F++PKLY+CY  QIN KVD +K  + E
Sbjct: 301 SMTLKVIPFLLLGAEYGHLVTLRRLCALGLFIGFTIPKLYSCYSSQINQKVDYIKSRILE 360

Query: 361 AWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDE 417
           AWEACSHKK+V GSA TAFWN SS+KTRIF AFI LVI+R  RQ ++  E E  E +++ 
Sbjct: 361 AWEACSHKKIVAGSAITAFWNMSSVKTRIFAAFIFLVILRCFRQHLL-PEQEKGEREQEP 420

[Close]

BLAST of CSPI06G12820 vs. TrEMBL
Match: U5FMF4_POPTR (Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0017s04610g PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 4.2e-121
Identity = 263/446 (58.97%), Postives = 322/446 (72.20%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLA-----VEAD-QTPHFSVDAISSPRRKTPSP------- 60
           MD TPPSHRS+P S+ KS+SRL+     +E + + P  S+D I S  +KTPS        
Sbjct: 1   MDTTPPSHRSNPNSQAKSASRLSRITYSIEPEAKPPQLSLDLIPSSEKKTPSSLSLKSST 60

Query: 61  ---SIQDILFLSPSTVGKSRSRLVDRFEMNDE-VPEPAVSRRRCRNRGPQLGLMGCASPR 120
               +Q+ L LSPS + KSR+RLVDR+EM +E V E   SRRRC++RG Q+G +GCASPR
Sbjct: 61  NSLPLQEQLLLSPSPLRKSRNRLVDRYEMPEEGVLEQNGSRRRCKSRGSQMGSLGCASPR 120

Query: 121 SIRRSRRRSEVETREERDLC-LAEEFVKARKRKQSGRSKKEK----LSLVPVPSTPSSST 180
           S RR RRR EVE+ EERDL    +E  K RKR+ SGRSKKEK    LSLVP  S PSSST
Sbjct: 121 SNRRLRRRLEVESMEERDLIGFVDEVGKVRKRRHSGRSKKEKEKEKLSLVP--SLPSSST 180

Query: 181 TPKLDNDENGSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAIS 240
           TPK+D  +  +L++IG ++ DLIMWKDVAKSSLWFGLG L F S+CF +G+SFSIFSAIS
Sbjct: 181 TPKVDEGDGVNLERIGMVVYDLIMWKDVAKSSLWFGLGCLCFLSSCFAKGISFSIFSAIS 240

Query: 241 QLGLLFLGLAFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCG 300
           QLGLLFLG++F+SNSICQRN+ EK  K FKL E+DI R+ +L+LPAAN AI K R+LF G
Sbjct: 241 QLGLLFLGVSFLSNSICQRNSVEKLRK-FKLTEEDILRVGRLILPAANLAILKTRDLFSG 300

Query: 301 EAEMTLKVAPFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWM 360
           E  MTLKV PFL+LGAEYG+L+TLRRLC IGFF SF++PKL+ CY  QIN KV+ +K  M
Sbjct: 301 EPSMTLKVIPFLLLGAEYGHLVTLRRLCGIGFFISFTIPKLFACYSSQINQKVEHLKCRM 360

Query: 361 FEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPE--IEEV 420
            EAW AC HKK+V  SA TAFWN SS+KTRIFTAFI LVI+R CRQ ++ S+ E  ++  
Sbjct: 361 MEAWRACFHKKMVAASAVTAFWNLSSVKTRIFTAFISLVILRCCRQQLMPSQEEGGLQPT 420

Query: 421 QEDEKQALVVVEAGKEEEQKQVQVVA 423
           Q       V  EA  E+E KQ  V +
Sbjct: 421 Q-------VEGEAEGEQEPKQAGVAS 436

[Close]

BLAST of CSPI06G12820 vs. TrEMBL
Match: M5VGG3_PRUPE (Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa014722mg PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 2.3e-119
Identity = 257/441 (58.28%), Postives = 322/441 (73.02%), Query Frame = 1


Query: 4   TPPSHR---SDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPS-----------I 63
           TPP H    S+P SRTKS+SRLA ++ Q PH S+  I+S  ++TPSPS           +
Sbjct: 8   TPPYHHHSHSEPPSRTKSASRLA-QSGQIPHLSLGLITSSPKRTPSPSAHSIRSSDSLPL 67

Query: 64  QDILFLSPSTVGK-SRSRLVDRFEMNDE-VPEPAVSRRRCRNRGPQLGLMGCASPRSIRR 123
           +++L LSPS + K S++RL DR EM DE + E A  RRRC++RG Q+GL+GCASPR+ RR
Sbjct: 68  RELLLLSPSPLRKRSKARLTDRLEMADEPMVEAAGPRRRCKSRGAQMGLLGCASPRNTRR 127

Query: 124 SRRRSEVETREERDLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDEN 183
           SRRRSE E RE++D  L EE  K RKR    RSKKEKLSLV    +PS+S++        
Sbjct: 128 SRRRSETEIREDKDSGLVEEIAKPRKR----RSKKEKLSLVLSLPSPSASSS-------- 187

Query: 184 GSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGL 243
            +LD+IGQL+ DLIMW+DVA+SSLWFGLGSLFF S+CF +G++FSIFSAISQLGLLFLG 
Sbjct: 188 -NLDRIGQLMNDLIMWRDVARSSLWFGLGSLFFLSSCFAKGINFSIFSAISQLGLLFLGA 247

Query: 244 AFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVA 303
           +FVSNSI QRN  EKK  DF LKE DI  + K++LPA N AI K R LF GE  MTLKVA
Sbjct: 248 SFVSNSISQRNGVEKK-LDFMLKESDILGVAKIILPATNLAISKTRALFSGEPSMTLKVA 307

Query: 304 PFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSH 363
           PF +LGAEYG+LITL RLC + FF SF++PKLY+CY IQ+N KV+ +K W+ EAW ACSH
Sbjct: 308 PFFLLGAEYGHLITLWRLCMLAFFISFTIPKLYSCYSIQMNQKVECLKWWVLEAWGACSH 367

Query: 364 KKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSS-EPEIEEVQEDEKQALVV 423
           KK+V  SAATAFWN SS++TRIFTAF+ LVI+RYCRQ +V   E    EV+++++QAL V
Sbjct: 368 KKIVAASAATAFWNLSSVRTRIFTAFLSLVILRYCRQHMVQPLENGEAEVEQEQQQALAV 427

[Close]

BLAST of CSPI06G12820 vs. TrEMBL
Match: B9RVU8_RICCO (Reticulon-like protein OS=Ricinus communis GN=RCOM_1173020 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 3.3e-118
Identity = 255/445 (57.30%), Postives = 324/445 (72.81%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLA-----VEADQTPHFSVDAISSPR-RKTPS-PS----- 60
           MD TPPSHRS+P S+TKS+SRLA     ++ +++   S+D I SP  ++TPS PS     
Sbjct: 1   MDSTPPSHRSNPNSQTKSASRLARITSSIDNEESLRSSLDLILSPAPKRTPSTPSNLSLK 60

Query: 61  -------IQDILFLSPSTVGKSRSRLVDRFEMNDEVP-EPAVSRRRCRNRGPQLGLMGCA 120
                    ++L LSPS   KSR+RL DR ++ +E   EP  SRRRC++R  QLG     
Sbjct: 61  SCTNSLPFHELLLLSPSPSRKSRTRLADRLDIAEEAAMEPTGSRRRCKSRTAQLG----- 120

Query: 121 SPRSIRRSRRRSEVETREERDLC-LAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTT 180
           SPR  RRSRRRSE+E REE+DL  L EE  KARKR+ SGRSKKEKLSLVP  S PSS+ +
Sbjct: 121 SPRISRRSRRRSEMEIREEKDLLGLVEEIGKARKRRHSGRSKKEKLSLVP--SLPSSNPS 180

Query: 181 PKLDNDENGSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQ 240
           PK+ + + G+L++IG++I DLIMWKDVAKSSLWFG G L F S+CF +G+SFSIFSAISQ
Sbjct: 181 PKVGDCDGGNLNRIGRMIYDLIMWKDVAKSSLWFGFGCLCFLSSCFAKGISFSIFSAISQ 240

Query: 241 LGLLFLGLAFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGE 300
           LGLLFLG +F+SNSICQRNN E +  +FKLKE+DI +L +L+LP AN AI   RELF GE
Sbjct: 241 LGLLFLGASFISNSICQRNNVESRC-NFKLKEEDILKLGRLILPPANLAISMARELFSGE 300

Query: 301 AEMTLKVAPFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMF 360
             MTLKV PFL++GAEYG+LIT+ RLCAIGFF  F++PKLY+CY  QIN KVD  +  + 
Sbjct: 301 PSMTLKVIPFLLVGAEYGHLITMWRLCAIGFFIGFTIPKLYSCYSSQINQKVDYARGRVL 360

Query: 361 EAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPE--IEEVQ 420
           +AWEACSHKK+V  SA TAFWN SS+KTRIF AFI LVI+R CRQ ++ ++ E   EE +
Sbjct: 361 DAWEACSHKKIVAASAITAFWNMSSVKTRIFAAFIFLVILRCCRQHMIPNQEEGQAEEGE 420

Query: 421 EDEKQALVVVEAGKEEEQKQVQVVA 423
           + ++Q     E G++E+Q+ + VVA
Sbjct: 421 QGQQQQQQEAEEGEQEQQQALVVVA 437

[Close]

BLAST of CSPI06G12820 vs. TAIR10
Match: AT2G20590.1 (AT2G20590.1 Reticulon family protein)

HSP 1 Score: 344.7 bits (883), Expect = 7.9e-95
Identity = 216/426 (50.70%), Postives = 287/426 (67.37%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAI-SSPRRKTPSPS----IQDILFL 60
           M+ TPP HRS+    TKS+SRL  ++   P+ S+D + SSP   TP+PS    ++DIL L
Sbjct: 1   MESTPPYHRSN----TKSASRLQ-DSSNPPNLSLDLVLSSPN--TPNPSSPVPLRDILLL 60

Query: 61  SPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVE 120
            PS + KSR+RL DR EM  E    AV R+R + +G Q  L+  ASPR+ RRSRRRSE  
Sbjct: 61  PPSPLRKSRTRLSDRLEMTSE-DAMAVVRKRGKGKGGQKSLL--ASPRNPRRSRRRSEAV 120

Query: 121 TREERDLCLAEEFVKA--RKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQI 180
             +E +L + EE VK   RKRK +GR KK+K S     S P   ++  L N     L+ I
Sbjct: 121 EEKEANLVI-EEIVKLPPRKRKTNGRPKKDKQS-----SAPPLCSSSDLPNTCQSDLNLI 180

Query: 181 GQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNS 240
           G++I+DL+MW+DVAKS+LWFG G L F S+CF +GV+FS+FSA+S LGL+ L  +F+SN+
Sbjct: 181 GEIISDLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNT 240

Query: 241 ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300
           +CQR N++ K + F + EDD+ R  + VLPA NF I K  ELF GE  MTLKV PFL+LG
Sbjct: 241 LCQRKNEDTK-RAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLG 300

Query: 301 AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG 360
           AEYG+LITL RL A GFF SF++PKLY+CY  QI+ KV+ VK  + EAW  CSHKK++ G
Sbjct: 301 AEYGHLITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGEAWGVCSHKKILAG 360

Query: 361 SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQ-EDEKQALVVVEAGKE 419
           SA TAFWN +S++TRIF  FI+LVI RY RQ +  +  E+E V+ E E++ L   E    
Sbjct: 361 SAVTAFWNLTSIRTRIFAVFIILVIFRYRRQNLQLTPEEVEPVENEQEEETLPQEEETVP 409

[Close]

BLAST of CSPI06G12820 vs. TAIR10
Match: AT4G28430.1 (AT4G28430.1 Reticulon family protein)

HSP 1 Score: 333.2 bits (853), Expect = 2.4e-91
Identity = 202/421 (47.98%), Postives = 280/421 (66.51%), Query Frame = 1


Query: 4   TPPSHRSDPRS--RTKSSSRLAVEA---------------DQTPHFSVDAISSPRRKTPS 63
           TPPS RS+ RS  R   +++  V++               + TP+ S  ++SSP      
Sbjct: 6   TPPSLRSNTRSALRLARNNKTLVKSHIPSLDLVLLSPKNNNGTPYPSPVSLSSPSSPV-- 65

Query: 64  PSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIR 123
            ++++IL LSPS + KSR+RL +RF+M  E  E AV+ RR + +G Q GL+   SPR+ R
Sbjct: 66  -TLREILLLSPSPLRKSRTRLSNRFDM--EAAEAAVTARRSKTKGGQNGLLASPSPRNFR 125

Query: 124 RSRRRSE--VETREERDLCLA---EEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPK 183
           RSR RSE  V+T+E  +  +    E+    RK+K+ GRSKKEK S VP+ ++PS S+   
Sbjct: 126 RSRLRSEAMVDTKENTEPIVVVTDEKKQNQRKQKKLGRSKKEKHSSVPLLASPSPSSDQP 185

Query: 184 LDNDENGSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFT-RGVSFSIFSAISQL 243
            D  + G L++I + I+DLIMW+DVAKS+LWFG G + F STCF  +G +FS+FSAIS L
Sbjct: 186 QDVCQ-GDLERIRENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSVFSAISYL 245

Query: 244 GLLFLGLAFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEA 303
           GLLFLG++F+SN++ QR  +E + ++ KL EDD+ R+ + +LP  N AI K  ELF GE 
Sbjct: 246 GLLFLGVSFLSNTLRQRVTEEAR-RELKLSEDDVLRIARRMLPITNLAISKTSELFSGEP 305

Query: 304 EMTLKVAPFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFE 363
            MTLKVAPF+++GAEYGYLITL RLCA GFF SF++PKLY+CY  Q+N KV+  ++   E
Sbjct: 306 AMTLKVAPFVLMGAEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFVE 365

Query: 364 AWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDE 402
           AW  C+HKK V GSA TAFWN +SLKTR    FI++V++RY RQ +     + EE ++ E
Sbjct: 366 AWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVVVIRYRRQNLQLDSEDEEEKKQQE 419

[Close]

BLAST of CSPI06G12820 vs. TAIR10
Match: AT5G58000.1 (AT5G58000.1 Reticulon family protein)

HSP 1 Score: 155.6 bits (392), Expect = 6.8e-38
Identity = 92/284 (32.39%), Postives = 165/284 (58.10%), Query Frame = 1


Query: 134 RKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIG-QLITDLIMWKDVAKSSLW 193
           RK S    K   S+   P   +SST    + ++N +  Q   Q + DL+MW+DV++S+L 
Sbjct: 186 RKISPPVIKRATSVYSAPPNSTSSTDRFAEQEDNFTHSQSKLQSLVDLVMWRDVSRSTLV 245

Query: 194 FGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNSICQRNN-DEKKHKDFKLKE 253
           FG G+    S+ +   ++FS  S ++ +GL++LGL FV  S+  R   +E++HK   ++E
Sbjct: 246 FGFGTFLIISSSYANDLNFSFISVVAYMGLIYLGLMFVLKSLIHRGMVEEERHKVVGVRE 305

Query: 254 DDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYLITLRRLCAIGFF 313
           +D+KR+++L++P  N ++ ++R LF G+   TLK+   L + A  G  ITL  L   GF 
Sbjct: 306 EDVKRMLRLIMPYLNESLHQLRALFSGDPSTTLKMGVVLFVLARCGSSITLWNLAKFGFL 365

Query: 314 SSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFT 373
            +F++PK++  Y    ++  +   +   +AWE+C+HKK V  +  T  WN SS+  R++ 
Sbjct: 366 GAFTIPKIFISYSTHFSAYGNFWMRRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWA 425

Query: 374 AFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEEEQ 416
           AF++LV  RY +  ++ +  + ++ ++D ++     EA +E+EQ
Sbjct: 426 AFMLLVAFRYYQHKMIWTTDQADDDEDDNEEE----EAEEEKEQ 465

[Close]

BLAST of CSPI06G12820 vs. NCBI nr
Match: gi|449463106|ref|XP_004149275.1| (PREDICTED: reticulon-like protein B17 [Cucumis sativus])

HSP 1 Score: 818.1 bits (2112), Expect = 6.9e-234
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60
           MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV
Sbjct: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60

Query: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER 120
           GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER 120

Query: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL 180
           DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL
Sbjct: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL 180

Query: 181 IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNSICQRNND 240
           IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNSICQRNND
Sbjct: 181 IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNSICQRNND 240

Query: 241 EKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYLI 300
           EKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYLI
Sbjct: 241 EKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYLI 300

Query: 301 TLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIGSAATAFW 360
           TLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIGSAATAFW
Sbjct: 301 TLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIGSAATAFW 360

Query: 361 NFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEEEQKQVQV 420
           NFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEEEQKQVQV
Sbjct: 361 NFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEEEQKQVQV 420

Query: 421 VAEPHC 427
           VAEPHC
Sbjct: 421 VAEPHC 426

[Close]

BLAST of CSPI06G12820 vs. NCBI nr
Match: gi|700191779|gb|KGN46983.1| (hypothetical protein Csa_6G157090 [Cucumis sativus])

HSP 1 Score: 786.2 bits (2029), Expect = 2.9e-224
Identity = 418/433 (96.54%), Postives = 418/433 (96.54%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60
           MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV
Sbjct: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60

Query: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER 120
           GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER 120

Query: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL 180
           DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL
Sbjct: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL 180

Query: 181 IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSF-------SIFSAISQLGLLFLGLAFVSNS 240
           IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSF       SIFSAISQLGLLFLGLAFVSNS
Sbjct: 181 IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSSNIDNYSIFSAISQLGLLFLGLAFVSNS 240

Query: 241 ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300
           ICQR N       FKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG
Sbjct: 241 ICQRYN-------FKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300

Query: 301 AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG 360
           AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG
Sbjct: 301 AEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIG 360

Query: 361 SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEE 420
           SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEE
Sbjct: 361 SAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEE 420

Query: 421 EQKQVQVVAEPHC 427
           EQKQVQVVAEPHC
Sbjct: 421 EQKQVQVVAEPHC 426

[Close]

BLAST of CSPI06G12820 vs. NCBI nr
Match: gi|659094813|ref|XP_008448255.1| (PREDICTED: reticulon-like protein B17 [Cucumis melo])

HSP 1 Score: 770.0 bits (1987), Expect = 2.2e-219
Identity = 402/426 (94.37%), Postives = 412/426 (96.71%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPSIQDILFLSPSTV 60
           MD TPPSHRSDPRSR KSSSRLA EADQTPHFSVDAISSPRRKTPSPSIQD+LFLSPSTV
Sbjct: 1   MDLTPPSHRSDPRSRPKSSSRLAFEADQTPHFSVDAISSPRRKTPSPSIQDLLFLSPSTV 60

Query: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVETREER 120
           GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVE REER
Sbjct: 61  GKSRSRLVDRFEMNDEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRSRRRSEVEIREER 120

Query: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDENGSLDQIGQLITDL 180
           DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSS TPKLDNDENGS D+IGQLITDL
Sbjct: 121 DLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSS-TPKLDNDENGSFDRIGQLITDL 180

Query: 181 IMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGLAFVSNSICQRNND 240
           IMWKD AKSSLWFGLGSLFFFSTCFTRGVSFSIFS ISQLGLLFLGLAFVSNSICQRNN 
Sbjct: 181 IMWKDAAKSSLWFGLGSLFFFSTCFTRGVSFSIFSTISQLGLLFLGLAFVSNSICQRNNV 240

Query: 241 EKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYLI 300
           EKKHKDFKLKEDDIK LVKLVLPAANFAI KIRELFCGEAEMTLKVAPFLILGAEYG+LI
Sbjct: 241 EKKHKDFKLKEDDIKHLVKLVLPAANFAILKIRELFCGEAEMTLKVAPFLILGAEYGHLI 300

Query: 301 TLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSHKKVVIGSAATAFW 360
           TLRRLCAIGFFSSFSVPKLY+CYQIQINSKVDAVKQW+FEAWEACSHKKVVIGSAAT FW
Sbjct: 301 TLRRLCAIGFFSSFSVPKLYSCYQIQINSKVDAVKQWLFEAWEACSHKKVVIGSAATVFW 360

Query: 361 NFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDEKQALVVVEAGKEEEQKQVQV 420
           NFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEI EVQEDE+QALVVVE+ +E++QKQVQV
Sbjct: 361 NFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIVEVQEDERQALVVVESKEEDDQKQVQV 420

Query: 421 VAEPHC 427
           VAEPHC
Sbjct: 421 VAEPHC 425

[Close]

BLAST of CSPI06G12820 vs. NCBI nr
Match: gi|645245712|ref|XP_008229008.1| (PREDICTED: reticulon-like protein B17 [Prunus mume])

HSP 1 Score: 457.6 bits (1176), Expect = 2.4e-125
Identity = 268/442 (60.63%), Postives = 327/442 (73.98%), Query Frame = 1


Query: 4   TPPSH---RSDPRSRTKSSSRLAVEADQTPHFSVDAISSPRRKTPSPS-----------I 63
           TPP H   RS+P SRTKSSSRLA ++ Q PH S+  I+S  ++TPSPS           +
Sbjct: 8   TPPYHHHSRSEPPSRTKSSSRLA-QSGQIPHLSLGLITSSPKRTPSPSAHSIRSSDSLPL 67

Query: 64  QDILFLSPSTVGK-SRSRLVDRFEMNDE-VPEPAVSRRRCRNRGPQLGLMGCASPRSIRR 123
           +++L LSPS + K S++RL DR EM DE V E A  RRRC++RG Q+GL+GCASPR+ RR
Sbjct: 68  RELLLLSPSPLRKRSKTRLTDRLEMADEPVVEAAGPRRRCKSRGAQMGLLGCASPRNTRR 127

Query: 124 SRRRSEVETREERDLCLAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTPKLDNDEN 183
           SRRRSE E RE++D  L EE  K RKR    RSKKEKLSLV    +PS+S+   +D++  
Sbjct: 128 SRRRSETEIREDKDSGLVEEIAKPRKR----RSKKEKLSLVLSLPSPSASS---IDDEYR 187

Query: 184 GSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQLGLLFLGL 243
           GSLD+IGQL+ DLIMW+DVA+SSLWFGLGSLFF S+CF +G++FSIFSAISQLGLLFLG 
Sbjct: 188 GSLDRIGQLMNDLIMWRDVARSSLWFGLGSLFFLSSCFAKGINFSIFSAISQLGLLFLGA 247

Query: 244 AFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVA 303
           +FVSNSIC+RN  EKK  DF LKE DI  + K++LPA N AI K R LF GE  MTLKVA
Sbjct: 248 SFVSNSICERNGVEKK-LDFMLKESDILGVAKMILPATNLAISKTRALFSGEPSMTLKVA 307

Query: 304 PFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFEAWEACSH 363
           PF +LGAEYG+LITL RLC + FF SF++PKLY+CY IQ+N KVD +K W+ EAW ACSH
Sbjct: 308 PFFLLGAEYGHLITLWRLCMLAFFISFTIPKLYSCYSIQMNQKVDCLKWWVMEAWGACSH 367

Query: 364 KKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSS-EPEIEEVQEDEKQALVV 423
           KK+V  SAATAFWN SS++TRIFTAFI LVI+RYCRQ +V   E    EV+++++QAL V
Sbjct: 368 KKIVAASAATAFWNLSSVRTRIFTAFISLVILRYCRQHMVQPLENGEAEVEQEQQQALAV 427

[Close]

BLAST of CSPI06G12820 vs. NCBI nr
Match: gi|802752377|ref|XP_012088230.1| (PREDICTED: reticulon-like protein B17 isoform X1 [Jatropha curcas])

HSP 1 Score: 449.9 bits (1156), Expect = 5.0e-123
Identity = 259/436 (59.40%), Postives = 321/436 (73.62%), Query Frame = 1


Query: 1   MDFTPPSHRSDPRSRTKSSSRLA-----VEADQTPHFSVDAI-SSPRRKTPSPS------ 60
           MD TPPSH+S+P S+TKS+SRLA     VE ++ PH S+D I SS +R +P+PS      
Sbjct: 1   MDSTPPSHKSNPNSQTKSASRLARITYSVENEEPPHLSLDLIHSSAKRTSPTPSALSLKS 60

Query: 61  ------IQDILFLSPSTVGKSRSRLVDRFEMNDEVP-EPAVSRRRCRNRGPQLGLMGCAS 120
                  QD+L LSPS   K+R+RL DR EM +E   EP  SRRRC+++   L  MGCAS
Sbjct: 61  STNSLSFQDLLLLSPSP-RKARTRLADRLEMAEEAAMEPTGSRRRCKSKAAHLSSMGCAS 120

Query: 121 PRSIRRSRRRSEVETREERDLC-LAEEFVKARKRKQSGRSKKEKLSLVPVPSTPSSSTTP 180
           PR  RRSRRRSE+E +E++DL  L EE  K RKR+ SGRSKKEKLSLVP  S PSSS +P
Sbjct: 121 PRHSRRSRRRSEIEIKEDKDLVGLVEEIGKVRKRRHSGRSKKEKLSLVP--SVPSSSPSP 180

Query: 181 KLDNDENGSLDQIGQLITDLIMWKDVAKSSLWFGLGSLFFFSTCFTRGVSFSIFSAISQL 240
           K++  +  +LD+IG +I DLIMWKDVAKSSLWFG G L F S+CF +G+SFS+ SAISQL
Sbjct: 181 KVEAGDESNLDRIGIIIYDLIMWKDVAKSSLWFGFGCLCFLSSCFAKGISFSMLSAISQL 240

Query: 241 GLLFLGLAFVSNSICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEA 300
           GLL LG +F+SNSIC+R+N EK+  +FKLKE+DI +L +L+LP AN AI K RELF GE 
Sbjct: 241 GLLLLGASFISNSICRRSNVEKR-SNFKLKEEDILKLGRLILPPANLAISKTRELFSGEP 300

Query: 301 EMTLKVAPFLILGAEYGYLITLRRLCAIGFFSSFSVPKLYTCYQIQINSKVDAVKQWMFE 360
            MTLKV PFL+LGAEYG+L+TLRRLCA+G F  F++PKLY+CY  QIN KVD +K  + E
Sbjct: 301 SMTLKVIPFLLLGAEYGHLVTLRRLCALGLFIGFTIPKLYSCYSSQINQKVDYIKSRILE 360

Query: 361 AWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEIEEVQEDE 417
           AWEACSHKK+V GSA TAFWN SS+KTRIF AFI LVI+R  RQ ++  E E  E +++ 
Sbjct: 361 AWEACSHKKIVAGSAITAFWNMSSVKTRIFAAFIFLVILRCFRQHLL-PEQEKGEREQEP 420

The following BLAST results are available for this feature:

BLAST of CSPI06G12820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLQ_ARATH	1.4e-93	50.70	Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1	[more]
RTNLR_ARATH	4.2e-90	47.98	Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2	[more]
RTNLS_ARATH	1.2e-36	32.39	Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2	[more]

BLAST of CSPI06G12820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW7_CUCSA	2.0e-224	96.54	Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1	[more]
A0A067JJE5_JATCU	3.5e-123	59.40	Reticulon-like protein OS=Jatropha curcas GN=JCGZ_25748 PE=4 SV=1	[more]
U5FMF4_POPTR	4.2e-121	58.97	Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0017s04610g PE=4 SV=1	[more]
M5VGG3_PRUPE	2.3e-119	58.28	Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa014722mg PE=4 SV=1	[more]
B9RVU8_RICCO	3.3e-118	57.30	Reticulon-like protein OS=Ricinus communis GN=RCOM_1173020 PE=4 SV=1	[more]

BLAST of CSPI06G12820 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20590.1	7.9e-95	50.70	Reticulon family protein	[more]
AT4G28430.1	2.4e-91	47.98	Reticulon family protein	[more]
AT5G58000.1	6.8e-38	32.39	Reticulon family protein	[more]

BLAST of CSPI06G12820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463106\|ref\|XP_004149275.1\|	6.9e-234	100.00	PREDICTED: reticulon-like protein B17 [Cucumis sativus]	[more]
gi\|700191779\|gb\|KGN46983.1\|	2.9e-224	96.54	hypothetical protein Csa_6G157090 [Cucumis sativus]	[more]
gi\|659094813\|ref\|XP_008448255.1\|	2.2e-219	94.37	PREDICTED: reticulon-like protein B17 [Cucumis melo]	[more]
gi\|645245712\|ref\|XP_008229008.1\|	2.4e-125	60.63	PREDICTED: reticulon-like protein B17 [Prunus mume]	[more]
gi\|802752377\|ref\|XP_012088230.1\|	5.0e-123	59.40	PREDICTED: reticulon-like protein B17 isoform X1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0044425	membrane part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G12820.1	CSPI06G12820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 178..332 score: 3.2
IPR003388	Reticulon	PROFILE	PS50845	RETICULON	coord: 177..335 score: 12
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 24..393 score: 9.1
None	No IPR available	PANTHER	PTHR10994:SF61	RETICULON-LIKE PROTEIN	coord: 24..393 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G12820	Csa6G157090	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G12820	MELO3C013582	Melon (DHL92) v3.5.1	cpimeB447
CSPI06G12820	Lsi10G016010	Bottle gourd (USVL1VR-Ls)	cpilsiB419
CSPI06G12820	MELO3C013582.2	Melon (DHL92) v3.6.1	cpimedB441
CSPI06G12820	CsaV3_6G015270	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G12820	Cucsa.384850	Cucumber (Gy14) v1	cgycpiB570
CSPI06G12820	CmaCh20G002090	Cucurbita maxima (Rimu)	cmacpiB562
CSPI06G12820	CmaCh02G000890	Cucurbita maxima (Rimu)	cmacpiB637
CSPI06G12820	CmoCh20G002290	Cucurbita moschata (Rifu)	cmocpiB550
CSPI06G12820	CmoCh02G000890	Cucurbita moschata (Rifu)	cmocpiB630
CSPI06G12820	Cp4.1LG05g15070	Cucurbita pepo (Zucchini)	cpecpiB746
CSPI06G12820	Cp4.1LG16g07750	Cucurbita pepo (Zucchini)	cpecpiB295
CSPI06G12820	CsGy6G012910	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G12820	Carg13595	Silver-seed gourd	carcpiB0027

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G12820	Melon (DHL92) v3.5.1	cpimeB437
CSPI06G12820	Watermelon (Charleston Gray)	cpiwcgB460
CSPI06G12820	Watermelon (97103) v1	cpiwmB532
CSPI06G12820	Bottle gourd (USVL1VR-Ls)	cpilsiB433
CSPI06G12820	Melon (DHL92) v3.6.1	cpimedB415
CSPI06G12820	Melon (DHL92) v3.6.1	cpimedB429
CSPI06G12820	Silver-seed gourd	carcpiB0426
CSPI06G12820	Watermelon (97103) v2	cpiwmbB453
CSPI06G12820	Wax gourd	cpiwgoB612
CSPI06G12820	Cucurbita maxima (Rimu)	cmacpiB138
CSPI06G12820	Cucurbita moschata (Rifu)	cmocpiB127
CSPI06G12820	Cucurbita moschata (Rifu)	cmocpiB640