CSPI06G11750 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G11750
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr6 : 10384170 .. 10384575 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACTTCAAACACACACACACACACACACACACATACAAACAATAACCTTTACCTTATGATCATGGCTTCTCTTTTCCCATATTTCTTCATTTATCTCCTCTTCCTCCTTCTTCTATCTTCTCCTACTCAATCTATGTGTGCTCGTTGTGTCCCTCCAAGCGCCCCTAGCACCATCGTTAGACCGCTTGCCACGCCCGACAATGCTGAAGCCTACGAGACTGTGAAGCCTCAACTTATTAACCGAAAGAGGCTGGTTTTTGGTGGCAATGAAGTCAAGAGCTGCCTCCCTAAAGGCTTTCGACGATCCTCTGCCCCTAGTCGATTTGTTAATTACCATACTTCTGGTGGTTGTTCTCCGACCACTGATCATTCTATTAACACCAACCCTTGAGAAAATGAAAAGC

mRNA sequence

ATGATCATGGCTTCTCTTTTCCCATATTTCTTCATTTATCTCCTCTTCCTCCTTCTTCTATCTTCTCCTACTCAATCTATGTGTGCTCGTTGTGTCCCTCCAAGCGCCCCTAGCACCATCGTTAGACCGCTTGCCACGCCCGACAATGCTGAAGCCTACGAGACTGTGAAGCCTCAACTTATTAACCGAAAGAGGCTGGTTTTTGGTGGCAATGAAGTCAAGAGCTGCCTCCCTAAAGGCTTTCGACGATCCTCTGCCCCTAGTCGATTTGTTAATTACCATACTTCTGGTGGTTGTTCTCCGACCACTGATCATTCTATTAACACCAACCCTTGA

Coding sequence (CDS)

ATGATCATGGCTTCTCTTTTCCCATATTTCTTCATTTATCTCCTCTTCCTCCTTCTTCTATCTTCTCCTACTCAATCTATGTGTGCTCGTTGTGTCCCTCCAAGCGCCCCTAGCACCATCGTTAGACCGCTTGCCACGCCCGACAATGCTGAAGCCTACGAGACTGTGAAGCCTCAACTTATTAACCGAAAGAGGCTGGTTTTTGGTGGCAATGAAGTCAAGAGCTGCCTCCCTAAAGGCTTTCGACGATCCTCTGCCCCTAGTCGATTTGTTAATTACCATACTTCTGGTGGTTGTTCTCCGACCACTGATCATTCTATTAACACCAACCCTTGA

Homology

[Close]

BLAST of CSPI06G11750 vs. TrEMBL
Match: A0A0A0KDD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147570 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 8.9e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 3   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN 62
           MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN
Sbjct: 1   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN 60

Query: 63  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP 112
           RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP
Sbjct: 61  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP 109

[Close]

BLAST of CSPI06G11750 vs. TrEMBL
Match: M5WH26_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013763mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-15
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 26  SMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 85
           S+ AR +P SAPST+VRPL T +  + Y ++KPQ +N K+ VF G EV  CLPKGFR +S
Sbjct: 23  SLAARNIPSSAPSTMVRPLVT-EGLDHYVSMKPQDLNHKQQVFHGREVNGCLPKGFRHAS 82

Query: 86  APSRFVNYHTSG-GCS 101
           APSR+VNYH  G GCS
Sbjct: 83  APSRYVNYHALGQGCS 97

[Close]

BLAST of CSPI06G11750 vs. TrEMBL
Match: V7BW48_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G132100g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.1e-15
Identity = 54/96 (56.25%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 7   FPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRL 66
           F    IYLL  L L+S   +M  R +PPSAPST+ RPL +   +E    VKPQLIN K+ 
Sbjct: 6   FSLLAIYLL--LSLNSLGTAMGGRIIPPSAPSTVTRPLVS---SEVENYVKPQLINHKQK 65

Query: 67  VFGGNEVKSCLPKGFRRSSAPSRFVNYHT--SGGCS 101
              G EVK CLPKG R +SAPSRFVNY T  SGGCS
Sbjct: 66  ALEGREVKGCLPKGSRHNSAPSRFVNYKTLGSGGCS 96

[Close]

BLAST of CSPI06G11750 vs. TrEMBL
Match: W9SJH4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020594 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 27  MCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSSA 86
           M  R +P SAPST+VRPL    + +   +++P+L   K+  F G E+K CLPKGFR +SA
Sbjct: 1   MAGRAIPSSAPSTVVRPLVAEVDQDLV-SLRPRLNPGKKQFFRGREIKGCLPKGFRHASA 60

Query: 87  PSRFVNYHTSGGCSPTTDHS 107
           PSRFVNY   GGCS T  HS
Sbjct: 61  PSRFVNYLPLGGCSSTRKHS 79

[Close]

BLAST of CSPI06G11750 vs. TrEMBL
Match: A0A0L9UN73_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g176600 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-13
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 1


Query: 12  IYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRLVFGGN 71
           IYL  LL LSS   +M  R +PPSAPST+ RPL    ++E    VKPQL N K+    G 
Sbjct: 12  IYL--LLSLSSLGTTMAGRIIPPSAPSTVTRPLV---SSEVENYVKPQL-NHKQKALQGR 71

Query: 72  EVKSCLPKGFRRSSAPSRFVNYHTSG--GCS 101
           EVK CLPKG R +SAPSRFVNY T G  GCS
Sbjct: 72  EVKGCLPKGSRHNSAPSRFVNYKTLGSTGCS 96

[Close]

BLAST of CSPI06G11750 vs. NCBI nr
Match: gi|700191660|gb|KGN46864.1| (hypothetical protein Csa_6G147570 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 3   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN 62
           MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN
Sbjct: 1   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN 60

Query: 63  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP 112
           RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP
Sbjct: 61  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP 109

[Close]

BLAST of CSPI06G11750 vs. NCBI nr
Match: gi|595836949|ref|XP_007207359.1| (hypothetical protein PRUPE_ppa013763mg [Prunus persica])

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-15
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 26  SMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 85
           S+ AR +P SAPST+VRPL T +  + Y ++KPQ +N K+ VF G EV  CLPKGFR +S
Sbjct: 23  SLAARNIPSSAPSTMVRPLVT-EGLDHYVSMKPQDLNHKQQVFHGREVNGCLPKGFRHAS 82

Query: 86  APSRFVNYHTSG-GCS 101
           APSR+VNYH  G GCS
Sbjct: 83  APSRYVNYHALGQGCS 97

[Close]

BLAST of CSPI06G11750 vs. NCBI nr
Match: gi|593699400|ref|XP_007150165.1| (hypothetical protein PHAVU_005G132100g [Phaseolus vulgaris])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 54/96 (56.25%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 7   FPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRL 66
           F    IYLL  L L+S   +M  R +PPSAPST+ RPL +   +E    VKPQLIN K+ 
Sbjct: 6   FSLLAIYLL--LSLNSLGTAMGGRIIPPSAPSTVTRPLVS---SEVENYVKPQLINHKQK 65

Query: 67  VFGGNEVKSCLPKGFRRSSAPSRFVNYHT--SGGCS 101
              G EVK CLPKG R +SAPSRFVNY T  SGGCS
Sbjct: 66  ALEGREVKGCLPKGSRHNSAPSRFVNYKTLGSGGCS 96

[Close]

BLAST of CSPI06G11750 vs. NCBI nr
Match: gi|703157740|ref|XP_010111805.1| (hypothetical protein L484_020594 [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 27  MCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSSA 86
           M  R +P SAPST+VRPL    + +   +++P+L   K+  F G E+K CLPKGFR +SA
Sbjct: 1   MAGRAIPSSAPSTVVRPLVAEVDQDLV-SLRPRLNPGKKQFFRGREIKGCLPKGFRHASA 60

Query: 87  PSRFVNYHTSGGCSPTTDHS 107
           PSRFVNY   GGCS T  HS
Sbjct: 61  PSRFVNYLPLGGCSSTRKHS 79

[Close]

BLAST of CSPI06G11750 vs. NCBI nr
Match: gi|920700936|gb|KOM44161.1| (hypothetical protein LR48_Vigan05g176600 [Vigna angularis])

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-13
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 1


Query: 12  IYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLINRKRLVFGGN 71
           IYL  LL LSS   +M  R +PPSAPST+ RPL    ++E    VKPQL N K+    G 
Sbjct: 12  IYL--LLSLSSLGTTMAGRIIPPSAPSTVTRPLV---SSEVENYVKPQL-NHKQKALQGR 71

Query: 72  EVKSCLPKGFRRSSAPSRFVNYHTSG--GCS 101
           EVK CLPKG R +SAPSRFVNY T G  GCS
Sbjct: 72  EVKGCLPKGSRHNSAPSRFVNYKTLGSTGCS 96

The following BLAST results are available for this feature:

BLAST of CSPI06G11750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G11750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD3_CUCSA	8.9e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147570 PE=4 SV=1	[more]
M5WH26_PRUPE	3.1e-15	59.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013763mg PE=4 SV=1	[more]
V7BW48_PHAVU	9.1e-15	56.25	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G132100g PE=4 SV=1	[more]
W9SJH4_9ROSA	1.7e-13	52.50	Uncharacterized protein OS=Morus notabilis GN=L484_020594 PE=4 SV=1	[more]
A0A0L9UN73_PHAAN	2.9e-13	57.14	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g176600 PE=4 SV=1	[more]

BLAST of CSPI06G11750 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G11750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191660\|gb\|KGN46864.1\|	1.3e-54	100.00	hypothetical protein Csa_6G147570 [Cucumis sativus]	[more]
gi\|595836949\|ref\|XP_007207359.1\|	4.5e-15	59.21	hypothetical protein PRUPE_ppa013763mg [Prunus persica]	[more]
gi\|593699400\|ref\|XP_007150165.1\|	1.3e-14	56.25	hypothetical protein PHAVU_005G132100g [Phaseolus vulgaris]	[more]
gi\|703157740\|ref\|XP_010111805.1\|	2.4e-13	52.50	hypothetical protein L484_020594 [Morus notabilis]	[more]
gi\|920700936\|gb\|KOM44161.1\|	4.2e-13	57.14	hypothetical protein LR48_Vigan05g176600 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G11750.1	CSPI06G11750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36619	FAMILY NOT NAMED	coord: 2..100 score: 5.2
None	No IPR available	PANTHER	PTHR36619:SF1	SUBFAMILY NOT NAMED	coord: 2..100 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G11750	Cla008716	Watermelon (97103) v1	cpiwmB529
CSPI06G11750	Csa6G147570	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G11750	MELO3C026916	Melon (DHL92) v3.5.1	cpimeB410
CSPI06G11750	Lsi10G012420	Bottle gourd (USVL1VR-Ls)	cpilsiB415
CSPI06G11750	MELO3C026916.2	Melon (DHL92) v3.6.1	cpimedB412
CSPI06G11750	CsaV3_6G014180	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G11750	Cla97C02G047490	Watermelon (97103) v2	cpiwmbB450
CSPI06G11750	Bhi10G000125	Wax gourd	cpiwgoB611
CSPI06G11750	CmoCh20G005400	Cucurbita moschata (Rifu)	cmocpiB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G11750	Watermelon (97103) v1	cpiwmB468
CSPI06G11750	Watermelon (97103) v1	cpiwmB525
CSPI06G11750	Cucurbita pepo (Zucchini)	cpecpiB293
CSPI06G11750	Cucurbita pepo (Zucchini)	cpecpiB749
CSPI06G11750	Bottle gourd (USVL1VR-Ls)	cpilsiB441
CSPI06G11750	Bottle gourd (USVL1VR-Ls)	cpilsiB453
CSPI06G11750	Bottle gourd (USVL1VR-Ls)	cpilsiB456
CSPI06G11750	Melon (DHL92) v3.6.1	cpimedB475
CSPI06G11750	Melon (DHL92) v3.6.1	cpimedB499
CSPI06G11750	Cucumber (Gy14) v2	cgybcpiB142
CSPI06G11750	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G11750	Cucumber (Gy14) v2	cgybcpiB289
CSPI06G11750	Silver-seed gourd	carcpiB0188
CSPI06G11750	Silver-seed gourd	carcpiB0374
CSPI06G11750	Silver-seed gourd	carcpiB0964
CSPI06G11750	Cucumber (Chinese Long) v3	cpicucB338
CSPI06G11750	Cucumber (Chinese Long) v3	cpicucB366
CSPI06G11750	Watermelon (97103) v2	cpiwmbB443
CSPI06G11750	Watermelon (97103) v2	cpiwmbB480
CSPI06G11750	Wax gourd	cpiwgoB534
CSPI06G11750	Wax gourd	cpiwgoB639
CSPI06G11750	Wax gourd	cpiwgoB643
CSPI06G11750	Wild cucumber (PI 183967)	cpicpiB128
CSPI06G11750	Wild cucumber (PI 183967)	cpicpiB186
CSPI06G11750	Cucumber (Gy14) v1	cgycpiB169
CSPI06G11750	Cucumber (Gy14) v1	cgycpiB463
CSPI06G11750	Cucumber (Gy14) v1	cgycpiB570
CSPI06G11750	Cucurbita maxima (Rimu)	cmacpiB272
CSPI06G11750	Cucurbita maxima (Rimu)	cmacpiB560
CSPI06G11750	Cucurbita maxima (Rimu)	cmacpiB636
CSPI06G11750	Cucurbita maxima (Rimu)	cmacpiB691
CSPI06G11750	Cucurbita maxima (Rimu)	cmacpiB860
CSPI06G11750	Cucurbita moschata (Rifu)	cmocpiB628
CSPI06G11750	Cucurbita moschata (Rifu)	cmocpiB683
CSPI06G11750	Cucurbita moschata (Rifu)	cmocpiB840
CSPI06G11750	Cucumber (Chinese Long) v2	cpicuB286
CSPI06G11750	Cucumber (Chinese Long) v2	cpicuB316
CSPI06G11750	Melon (DHL92) v3.5.1	cpimeB417
CSPI06G11750	Melon (DHL92) v3.5.1	cpimeB486
CSPI06G11750	Melon (DHL92) v3.5.1	cpimeB515
CSPI06G11750	Watermelon (Charleston Gray)	cpiwcgB445
CSPI06G11750	Watermelon (Charleston Gray)	cpiwcgB457
CSPI06G11750	Watermelon (Charleston Gray)	cpiwcgB489