CSPI06G00300 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G00300
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 263517 .. 263852 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGATGGTTAG

mRNA sequence

ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGATGGTTAG

Coding sequence (CDS)

ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGATGGTTAG
Homology
[Close]
BLAST of CSPI06G00300 vs. TrEMBL
Match: A0A0A0K833_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002320 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-58
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 112
           QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 111

[Close]
BLAST of CSPI06G00300 vs. TrEMBL
Match: A0A0A0LIF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848840 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.8e-10
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 2   FVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQ 61
           F F+++ + + VDA + L    +  +  FSPEMF +MA+   S    I LQL+PPFF+  
Sbjct: 4   FNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNVSIHSAIGLQLWPPFFD-H 63

Query: 62  YSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFA-DSHHADLTF 107
           Y C+ L  SW + +  FP   +L+  G++S +FS   D HHA + F
Sbjct: 64  YFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEF 108

[Close]
BLAST of CSPI06G00300 vs. NCBI nr
Match: gi|700190434|gb|KGN45638.1| (hypothetical protein Csa_6G002320 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-58
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 112
           QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 111

[Close]
BLAST of CSPI06G00300 vs. NCBI nr
Match: gi|659116807|ref|XP_008458269.1| (PREDICTED: uncharacterized protein LOC103497738 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 1 

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 112
           QYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS HADLTFCSRDG
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDG 111

[Close]
BLAST of CSPI06G00300 vs. NCBI nr
Match: gi|659117587|ref|XP_008458680.1| (PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 44/104 (42.31%), Postives = 59/104 (56.73%), Query Frame = 1 

Query: 1   MFVFILDEIHSFVDAVSALAGLGY-VFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFN 60
           M  F L +IH F++A+S L       F+LKFSP +FSIM   +PS  C I+LQL P  F 
Sbjct: 1   MIFFELPQIHGFLEAISVLTETSEDEFDLKFSPAIFSIMVAASPSSRCIISLQLSPQIF- 60

Query: 61  QQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD 104
           + Y C  LH+ +++   F   M   + TGFSSL FSF +    D
Sbjct: 61  RTYVCPTLHHKFLFFRAFCDTMQECQSTGFSSLIFSFQEQDPHD 103

[Close]
BLAST of CSPI06G00300 vs. NCBI nr
Match: gi|659119586|ref|XP_008459734.1| (PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-10
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1 

Query: 2  FVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQ 61
          F F+++ + + +DA++ L     + +  FSPEMF +M +   S   TI LQL+PPFF+  
Sbjct: 3  FNFVVNNMQTLIDALATLGVADQLADATFSPEMFCVMVDSNVSIHSTIGLQLWPPFFD-H 62

Query: 62 YSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFS 96
          Y C +L YSW + N  FP    L+ +G++S +FS
Sbjct: 63 YFCSELQYSWFFFNEIFPLAQDLQDSGYTSFSFS 95

[Close]
BLAST of CSPI06G00300 vs. NCBI nr
Match: gi|778686236|ref|XP_011652354.1| (PREDICTED: uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 2   FVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQ 61
           F F+++ + + VDA + L    +  +  FSPEMF +MA+   S    I LQL+PPFF+  
Sbjct: 4   FNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNVSIHSAIGLQLWPPFFD-H 63

Query: 62  YSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFA-DSHHADLTF 107
           Y C+ L  SW + +  FP   +L+  G++S +FS   D HHA + F
Sbjct: 64  YFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEF 108

The following BLAST results are available for this feature:
BLAST of CSPI06G00300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G00300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K833_CUCSA3.0e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002320 PE=4 SV=1[more]
A0A0A0LIF2_CUCSA8.8e-1037.74Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848840 PE=4 SV=1[more]
BLAST of CSPI06G00300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G00300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190434|gb|KGN45638.1|4.3e-58100.00hypothetical protein Csa_6G002320 [Cucumis sativus][more]
gi|659116807|ref|XP_008458269.1|1.9e-5394.59PREDICTED: uncharacterized protein LOC103497738 [Cucumis melo][more]
gi|659117587|ref|XP_008458680.1|1.9e-1042.31PREDICTED: uncharacterized protein LOC103498008 [Cucumis melo][more]
gi|659119586|ref|XP_008459734.1|4.3e-1038.30PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo][more]
gi|778686236|ref|XP_011652354.1|1.3e-0937.74PREDICTED: uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G00300.1CSPI06G00300.1mRNA