CSPI05G01520 (gene) Wild cucumber (PI 183967)

NameCSPI05G01520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCalcium-binding EF-hand family protein, putative
LocationChr5 : 2125071 .. 2125601 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATCTCAAATCTTCAAGTTTCCAAAGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGGTATACGCTGATGCTAATAAAGATGGTCTTATTAGCAAGGATGAACTCGAAAAACTCGTTGATTATGCATATAAATTTTTCAAGAAACGATGA

mRNA sequence

ATGTATATCTCAAATCTTCAAGTTTCCAAAGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGGTATACGCTGATGCTAATAAAGATGGTCTTATTAGCAAGGATGAACTCGAAAAACTCGTTGATTATGCATATAAATTTTTCAAGAAACGATGA

Coding sequence (CDS)

ATGTATATCTCAAATCTTCAAGTTTCCAAAGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGGTATACGCTGATGCTAATAAAGATGGTCTTATTAGCAAGGATGAACTCGAAAAACTCGTTGATTATGCATATAAATTTTTCAAGAAACGATGA
BLAST of CSPI05G01520 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 5.9e-93
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
           HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
           LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFF KR
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of CSPI05G01520 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.9e-52
Identity = 117/176 (66.48%), Postives = 135/176 (76.70%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ+SKAKYEASKLMKK+E N EGV L AFN     ST+IN  + MAT+  LKP N
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKK-LKP-N 87

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L+SNA +  + Q+  GKAQV    V D KASNMQFSREQIKEIFQY+DSD DGF
Sbjct: 88  DDVAHKLSSNAQLKSNNQI-RGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGF 147

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
           LN+REVTKAFA LG+I P  KAYHGMVYAD NKDGLI +DEL+KL++YA KF KK+
Sbjct: 148 LNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CSPI05G01520 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.6e-44
Identity = 101/176 (57.39%), Postives = 135/176 (76.70%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYIS LQ S A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDVR-SSTQIGNRESVLK--ILKPSD 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L S A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGF
Sbjct: 61  G-VAHKLRSEAHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
           LN  E+TKAFAFLG++ P YKA +GMVYADAN+DGLIS+ EL+KL+DYA K  KK+
Sbjct: 121 LNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CSPI05G01520 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.2e-30
Identity = 81/180 (45.00%), Postives = 125/180 (69.44%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGV----PLKAFNGIPPASTKINNKQAMATEIIL 60
           M +S+LQ + AK EA++L+KK++ N +GV     L++F      ST++NN + +++  + 
Sbjct: 1   MSVSHLQ-AWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  KPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSD 120
           K +N  +A  ++SN  + P KQL   KAQ ++      K SN+  SREQIKEIF+YHDS+
Sbjct: 61  K-TNENLAQKVSSNTCITPKKQL-LDKAQGSS------KQSNVPLSREQIKEIFKYHDSN 120

Query: 121 NDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
            DGFL++RE+TKAF+ +G+I+P  KA + M YAD ++DGL+S+ EL+KL+DYA+K  KK+
Sbjct: 121 KDGFLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CSPI05G01520 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.6e-19
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1

Query: 97  SNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGL 156
           S   FSRE++KEIF+ HD D DG+L++ E+ KA  FLG  +P YKA++GM Y D N DGL
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 157 ISKDELEKLVDYAYKFFKKR 177
           IS+DEL+KL+DYA +F K+R
Sbjct: 67  ISEDELDKLIDYAERFQKRR 86

BLAST of CSPI05G01520 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 8.4e-93
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
           HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
           LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFF KR
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of CSPI05G01520 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 5.5e-52
Identity = 117/176 (66.48%), Postives = 135/176 (76.70%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ+SKAKYEASKLMKK+E N EGV L AFN     ST+IN  + MAT+  LKP N
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKK-LKP-N 87

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L+SNA +  + Q+  GKAQV    V D KASNMQFSREQIKEIFQY+DSD DGF
Sbjct: 88  DDVAHKLSSNAQLKSNNQI-RGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGF 147

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
           LN+REVTKAFA LG+I P  KAYHGMVYAD NKDGLI +DEL+KL++YA KF KK+
Sbjct: 148 LNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CSPI05G01520 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 9.4e-44
Identity = 101/176 (57.39%), Postives = 135/176 (76.70%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYIS LQ S A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDVR-SSTQIGNRESVLK--ILKPSD 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L S A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGF
Sbjct: 61  G-VAHKLRSEAHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
           LN  E+TKAFAFLG++ P YKA +GMVYADAN+DGLIS+ EL+KL+DYA K  KK+
Sbjct: 121 LNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CSPI05G01520 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 81/180 (45.00%), Postives = 125/180 (69.44%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGV----PLKAFNGIPPASTKINNKQAMATEIIL 60
           M +S+LQ + AK EA++L+KK++ N +GV     L++F      ST++NN + +++  + 
Sbjct: 1   MSVSHLQ-AWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  KPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSD 120
           K +N  +A  ++SN  + P KQL   KAQ ++      K SN+  SREQIKEIF+YHDS+
Sbjct: 61  K-TNENLAQKVSSNTCITPKKQL-LDKAQGSS------KQSNVPLSREQIKEIFKYHDSN 120

Query: 121 NDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
            DGFL++RE+TKAF+ +G+I+P  KA + M YAD ++DGL+S+ EL+KL+DYA+K  KK+
Sbjct: 121 KDGFLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CSPI05G01520 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.8e-27
Identity = 80/176 (45.45%), Postives = 115/176 (65.34%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M +S+LQ + AK EAS+L+KK++ N +GV  K          ++ N + +++  I K +N
Sbjct: 1   MSVSHLQ-AWAKIEASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIPK-TN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             +   ++SN  + P KQL   KAQ +      ++ SN+  SREQIKEIF+YHDS+ DGF
Sbjct: 61  ENLDQKVSSNTRIKPKKQL-LDKAQDS------LRQSNVPLSREQIKEIFKYHDSNKDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFKKR 177
           L++RE+TKAF  LG+I+P  KA H M YAD ++DGLIS+ EL KL+DYA K  KK+
Sbjct: 121 LSIRELTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KIY4_CUCSA5.9e-9399.43Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA3.9e-5266.48Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA6.6e-4457.39Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA9.2e-3045.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA5.6e-1957.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700194513|gb|KGN49690.1|8.4e-9399.43hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|5.5e-5266.48hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194510|gb|KGN49687.1|9.4e-4457.39hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|1.3e-2945.00PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|2.8e-2745.45PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G01520.1CSPI05G01520.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 149..166
score: 1.
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 106..133
score: 3.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 150..172
score: 7.986coord: 101..136
score: 12
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 97..167
score: 1.8
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 97..165
score: 6.99
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 150..162
score: -coord: 114..126
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 97..169
score: 2.4
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 97..169
score: 2.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G01520CmoCh04G020320Cucurbita moschata (Rifu)cmocpiB754
The following gene(s) are paralogous to this gene:

None