CSPI04G20430 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G20430
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNAD dependent epimerase/dehydratase, putative
LocationChr4 : 18566153 .. 18569748 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTTGAACAAGATGTTGAAGTGGCTCTTTCGATTTCGATTTCTTTTTTCGATTTTGGGTTTTAGATTCGATAAATTTTAATTGAGAGGTGGAGGCAAATCACTGTCTTATCCTCAAAACATTAGAATGAAATCCAGCCAGAGAATGAGTAGCCATGTCCTTAGAAGAACAACCCTTCAAATCCATTCCCTTTTTAATCCCACCACCAAACAGGAAGACGAAGGGTTTCTAAATGGGGATCATGGCAAACCCAATGGCTGCTCACCACCAAAAGTTTACTTCATTCTCTGTTCTTCCTTCTTCTCTTTCCGATTTCAATGGCGCCAGACTCCACGCCCAAGTTCAGGTCTATTTCTCGTTTCTTTTCTCCTACCTATCTTTCTCTTTTGGGTTTTGCTTTTATCTCTTCAATTTTGATTCAATCTGGATATTATTTGAGCGGTTCTTGTTGTTAAAGCCTAAAAATCAGTGCACATTGAACTGGGTTTCCCCTTAAGTGGCCATATTGCTATATGCGAGTTTCTTTTCCCTCCGTTTTGATTGATTCATATATGTTGTTTGCCACTAAACACAAAAGCTTAGAAGAAATAGGATACATCGACTATTAATTGCATTAAAAAAACTCATTCAACATGAAAGCTGTTAACATGAATTTGAGGGTGAGTGTGGTTTCGGAACATTCTGCGTTGATGCTATGTTAATTACGAAAGCTTTGAAATATAAGTTTGATTCATGAAGCCTGATTAGCATGTGCGCTGCTAAAATGAATAAGTGGGGAAATGAGGTTTCAAATATGAGTTTTTTTTTTTAACCTGATACTGTGTTAAATTACATTACGTTGGGAAGTGTAGGCTGATTGATTATGGTGCATTTAGTGCTTTATATATTTTCTCAATGTGGTTTGGCCTTGGATTGCAGTATAAAAGGAAGGTTATGCAGCCAGGAGGATTACATGTTACAGCAAGTGCCAAAAAGAACATTCTTATAATGGGTGGCACCAGATTTATTGGTATATTCTTGTCTAGACTTCTAGTCAAAGAGGGTCATCAGGTTTTGCCATTCTCTTTCTTCTTTCTCTGGTTGCTGCAGATTCCCCATTAGAAGATTCATGGGATTTGCTAATTTTGGCAGGTAACTTTGTTTACAAGAGGAAAAGCACCTGTTACACAACAATTGCCGGGCGAGTCGGAAGCAGATTATGCTGATTTTAAATCCAAGGTCATCTAAGCTTCCATTTAAGCCTTAAAACTCTTGTGAACTTTCATAAAGAGAAATGTGGTACCATGGTTTTATTTTTAAGCATATTACTTGTGAATTTGTTGGAGTACAGATGCTAAATTTGTCTATTTGATTCTCATTTCTCAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTTAAATCCAGTCTCTCGGCTGCGGGGTTTGATGTAGTTTACGACATTAATGGTGAGTCTGATTTTGGATCGATCACTTCTGGTTTTAAAACTTTCACCCTGATTTGTTTTAAAACCGTCATATCCAATAGTTTTTTTGGTCTACACACTGCTACATGATTTCAGGGCGAGAAGCAGATGAAGTTGAACCAATTATAGATGCTTTGCCTAAGCTAGAGCAGTAAGATTTCCTAAATAATATCTGCTTTCTTTTCACAGCAATTGTTGTTAGTCATGTGCATCATGTTTTCCAATGCTAGAGGGAACAATTTTGATTTACAAAAATGATTTTGTGCCATTGGTGATACGGGATTGGTTTGTTGTGTTTCTGTGGGTGAAAGTATTCAGATTGTTGGACTTGAATTCGGAAACGTTGCCTGCATTGTTAATTTTATGAAGGTATAGAAGATATATTATTCACCTGTCAAGGTAAATTTAGGTGTTTCAAGGAATCAAAGGTCATATATTCAAATCATAGTGATGATCCAGTGGAAATATTAAATGTTCTACAAGTTTTCCAAACTGAAATGTTACATTATAAGATAACTGTCCTATGAAATCAGTAAAGTAAGTAAGCTAGTCTAAATATTACAATTCACAAAAATTTGCATAAAGAACCATGAAACAGAATATAGATTTTGCGGAGTTCGATAAAATGTGATGTATCTAATTATTCTCAGGTTTATTTACTGCTCTTCAGCTGGTGTATACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTACCTTTTCTTTCCTTATAAACAAAAGCTTTCAGATCACTTTCTTTGTCCAATACCAAAATAATTGGTTTACTCAAAGTTGGACCTCCACTTCTCTTTCATTTCGTAGGTAGATGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCGTCGAAGGATGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGACCATTGAACTACAATCCTGTGGAAGAATGGTTCTTCCACCGATTGAAAGCCGGTCGCCCCATTCCAATTCCCAACTCGGGCATTCAAATTACACAACTTGGTCACGTCAAGGTCTGTGCTGTTAAGGTCATTTAGTGCAATAGGAACAAATCGTTAAGTCTGTTGTAGGTAGCAGGCCAATAGAGATCCTTTGATGTGAATAGCCTGGGAAAAGGATTATAGTTTAAAACATTTCTTGATGTTAATGTAGCAATTGAGATCAAGTTAATAATTGAACCTTTTTTGTCAACTGCAGGATTTGGCAAATGCTTTTGTTCAGGTTCTTGGTAATGACAAGGCAAGCCAGCAAGTATTCAATATTTCTGGTGAAAAATATGTTTCATTTGATGGGTTAGCCAAAGCTTGTGCCAAGGTAATCTCTTGAAGAAATAATCAGGACACCGTAGTATTCATCATTGAGATAACATCTGAATTGGCTTCTCTCTCCTGTAATAAACTTTACAGGCTGGAGGCTTTCCTGAGCCCGAGATTGTTCACTACAATCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGGTAATCTGGTGGATATAATGATAAATATGATGCAGTTTGCTGGAATTTGATGGCTGAAATAGCACCATTGTTAATATAAATGTCATGCAGCATTTCTTTGCATCAATTGAGAAAGCGAAGAGTGTGCTCGGCTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAATTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTTTCAACAGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGAGGCATCCTTTTTCATTTTTTTTTCTTGGCTGTTTTAACTCATTCTCTACCGATCTGCAGGGGTTAATCGACCGATCTCGGGTTGAGAAGTCAATTTAGGAATGTTATTTATGTATATGTATGAGATGGAGGTTTTTAGAGAAGCATTAGAACTAGGCCTTGTCAATTCATTAGAGGCCTTCTTCACTCAAGCATAGATAAAGTCAAATGTTTATGTATGATATGAAAAATGCAGTATAAATGATGTCATTTGTTTCTTGTTATTTGCTCATATTTTCGTAGCTTTTTAATCATATATCAAACTCAATGTTGGATAATGTTGTTGAGCA

mRNA sequence

ATGGGGATCATGGCAAACCCAATGGCTGCTCACCACCAAAAGTTTACTTCATTCTCTGTTCTTCCTTCTTCTCTTTCCGATTTCAATGGCGCCAGACTCCACGCCCAAGTTCAGTATAAAAGGAAGGTTATGCAGCCAGGAGGATTACATGTTACAGCAAGTGCCAAAAAGAACATTCTTATAATGGGTGGCACCAGATTTATTGGTATATTCTTGTCTAGACTTCTAGTCAAAGAGGGTCATCAGGTAACTTTGTTTACAAGAGGAAAAGCACCTGTTACACAACAATTGCCGGGCGAGTCGGAAGCAGATTATGCTGATTTTAAATCCAAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTTAAATCCAGTCTCTCGGCTGCGGGGTTTGATGTAGTTTACGACATTAATGGGCGAGAAGCAGATGAAGTTGAACCAATTATAGATGCTTTGCCTAAGCTAGAGCAGTTTATTTACTGCTCTTCAGCTGGTGTATACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTAGATGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCGTCGAAGGATGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGACCATTGAACTACAATCCTGTGGAAGAATGGTTCTTCCACCGATTGAAAGCCGGTCGCCCCATTCCAATTCCCAACTCGGGCATTCAAATTACACAACTTGGTCACGTCAAGGATTTGGCAAATGCTTTTGTTCAGGTTCTTGGTAATGACAAGGCAAGCCAGCAAGTATTCAATATTTCTGGTGAAAAATATGTTTCATTTGATGGGTTAGCCAAAGCTTGTGCCAAGGCTGGAGGCTTTCCTGAGCCCGAGATTGTTCACTACAATCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCAATTGAGAAAGCGAAGAGTGTGCTCGGCTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAATTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTTTCAACAGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA

Coding sequence (CDS)

ATGGGGATCATGGCAAACCCAATGGCTGCTCACCACCAAAAGTTTACTTCATTCTCTGTTCTTCCTTCTTCTCTTTCCGATTTCAATGGCGCCAGACTCCACGCCCAAGTTCAGTATAAAAGGAAGGTTATGCAGCCAGGAGGATTACATGTTACAGCAAGTGCCAAAAAGAACATTCTTATAATGGGTGGCACCAGATTTATTGGTATATTCTTGTCTAGACTTCTAGTCAAAGAGGGTCATCAGGTAACTTTGTTTACAAGAGGAAAAGCACCTGTTACACAACAATTGCCGGGCGAGTCGGAAGCAGATTATGCTGATTTTAAATCCAAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTTAAATCCAGTCTCTCGGCTGCGGGGTTTGATGTAGTTTACGACATTAATGGGCGAGAAGCAGATGAAGTTGAACCAATTATAGATGCTTTGCCTAAGCTAGAGCAGTTTATTTACTGCTCTTCAGCTGGTGTATACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTAGATGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCGTCGAAGGATGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGACCATTGAACTACAATCCTGTGGAAGAATGGTTCTTCCACCGATTGAAAGCCGGTCGCCCCATTCCAATTCCCAACTCGGGCATTCAAATTACACAACTTGGTCACGTCAAGGATTTGGCAAATGCTTTTGTTCAGGTTCTTGGTAATGACAAGGCAAGCCAGCAAGTATTCAATATTTCTGGTGAAAAATATGTTTCATTTGATGGGTTAGCCAAAGCTTGTGCCAAGGCTGGAGGCTTTCCTGAGCCCGAGATTGTTCACTACAATCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCAATTGAGAAAGCGAAGAGTGTGCTCGGCTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAATTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTTTCAACAGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA
Homology
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BLAST of CSPI04G20430 vs. Swiss-Prot
Match: CP41B_ARATH (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1)

HSP 1 Score: 664.1 bits (1712), Expect = 9.4e-190
Identity = 318/375 (84.80%), Postives = 348/375 (92.80%), Query Frame = 1 

Query: 8   MAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNILIMGGTR 67
           M   HQ   SFS+L SSLSDFNGA+LH QVQYKRKV QP G L+V+AS++K ILIMGGTR
Sbjct: 6   MLQQHQP--SFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTR 65

Query: 68  FIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVK 127
           FIG+FLSR+LVKEGHQVTLFTRGK+P+ +QLPGES+ D+ADF SKILHLKGDRKD+DFVK
Sbjct: 66  FIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVK 125

Query: 128 SSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDP 187
           SSLSA GFDVVYDINGREA+EVEPI++ALPKLEQ+IYCSSAGVYLKSD+LPH E DAVDP
Sbjct: 126 SSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDP 185

Query: 188 KSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQ 247
           KSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQ
Sbjct: 186 KSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQ 245

Query: 248 ITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEIVHYN 307
           I+QLGHVKDLA AF+ VLGN+KAS+++FNISGEKYV+FDGLAKACAKAGGFPEPEIVHYN
Sbjct: 246 ISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN 305

Query: 308 PKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEAD 367
           PKEFDFGKKK FPFRDQHFFAS+EKAK VLGWKPEFDLVEGL DSYNLDFGRGTFRKEAD
Sbjct: 306 PKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEAD 365

Query: 368 FSTDDIILGKSLVLQ 382
           F+TDD+IL K LVLQ
Sbjct: 366 FTTDDMILSKKLVLQ 378

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BLAST of CSPI04G20430 vs. Swiss-Prot
Match: CP41A_ARATH (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.1e-52
Identity = 132/371 (35.58%), Postives = 196/371 (52.83%), Query Frame = 1 

Query: 16  TSFSVLPSSLSDFNGARLHAQVQYKRKVMQPGGLHVTASA---KKNILIM----GGTRFI 75
           +SFS L SS S  + + L   ++  R+ + P    V AS+   KKN+LI+    GG   I
Sbjct: 38  SSFSSLSSSSSS-SSSLLTFSLRTSRR-LSPQKFTVKASSVGEKKNVLIVNTNSGGHAVI 97

Query: 76  GIFLSRLLVKEGHQVTLFTRG--KAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVK 135
           G + ++ L+  GH VT+ T G   +   ++ P    ++      K +   G+  +   V 
Sbjct: 98  GFYFAKELLSAGHAVTILTVGDESSEKMKKPPFNRFSEIVSGGGKTVW--GNPAN---VA 157

Query: 136 SSLSAAGFDVVYDINGREADEVEPIIDALPK--LEQFIYCSSAGVYLKSDLLPHFEVDAV 195
           + +    FDVV D NG++ D V P++D      ++QF++ SSAG+Y  ++  PH E DAV
Sbjct: 158 NVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAV 217

Query: 196 DPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSG 255
              + H   +  E  LA    NW S RP Y+ G  N    EEWFF R+   R +PIP SG
Sbjct: 218 KADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSG 277

Query: 256 IQITQLGHVKDLANAFVQVLGN-DKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEIV 315
           +Q+T + HV+DL++     + N + AS  +FN   ++ V+ DG+AK CA A G    EIV
Sbjct: 278 LQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIV 337

Query: 316 HYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRK 375
           HY+PK      KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +K
Sbjct: 338 HYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKK 397

[Close]
BLAST of CSPI04G20430 vs. Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-11
Identity = 81/349 (23.21%), Postives = 147/349 (42.12%), Query Frame = 1 

Query: 56  KKNILIMGGTRFIGIFLSRLLVKEGHQVTL----FTRGKAPVTQQLPGES---------E 115
           +K ILI GG  F+G  L+  L+ +GH+VT+    FT  K  V   +  E+         E
Sbjct: 88  RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE 147

Query: 116 ADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKL-EQF 175
             Y +   +I HL       +++ + +     + +  +N         ++    ++  + 
Sbjct: 148 PLYIEV-DQIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARL 207

Query: 176 IYCSSAGVYLKSDLLPHFE-----VDAVDPKSRH-KGKLETESL----LASKDVNWTSIR 235
           +  S++ VY   ++ P  E     V+ + P++ + +GK   E++    +  + V     R
Sbjct: 208 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 267

Query: 236 PVYIYGP---LNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLANAFVQVLGNDK 295
               +GP   +N   V   F  +   G P+ +  SG Q     +V DL N  V ++ ++ 
Sbjct: 268 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 327

Query: 296 ASQ-QVFNISGEKYVSFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFA 355
           +S   + N      + F  L K    +G     EI   +  + D  K+KP          
Sbjct: 328 SSPVNLGNPEEHTILEFAQLIKNLVGSGS----EIQFLSEAQDDPQKRKP---------- 387

Query: 356 SIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGK 377
            I+KAK +LGW+P   L EGL  + +       FRKE ++  ++  + K
Sbjct: 388 DIKKAKLMLGWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 406

[Close]
BLAST of CSPI04G20430 vs. Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-11
Identity = 81/349 (23.21%), Postives = 147/349 (42.12%), Query Frame = 1 

Query: 56  KKNILIMGGTRFIGIFLSRLLVKEGHQVTL----FTRGKAPVTQQLPGES---------E 115
           +K ILI GG  F+G  L+  L+ +GH+VT+    FT  K  V   +  E+         E
Sbjct: 88  RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE 147

Query: 116 ADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKL-EQF 175
             Y +   +I HL       +++ + +     + +  +N         ++    ++  + 
Sbjct: 148 PLYIEV-DQIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARL 207

Query: 176 IYCSSAGVYLKSDLLPHFE-----VDAVDPKSRH-KGKLETESL----LASKDVNWTSIR 235
           +  S++ VY   ++ P  E     V+ + P++ + +GK   E++    +  + V     R
Sbjct: 208 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 267

Query: 236 PVYIYGP---LNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLANAFVQVLGNDK 295
               +GP   +N   V   F  +   G P+ +  SG Q     +V DL N  V ++ ++ 
Sbjct: 268 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 327

Query: 296 ASQ-QVFNISGEKYVSFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFA 355
           +S   + N      + F  L K    +G     EI   +  + D  K+KP          
Sbjct: 328 SSPVNLGNPEEHTILEFAQLIKNLVGSGS----EIQFLSEAQDDPQKRKP---------- 387

Query: 356 SIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGK 377
            I+KAK +LGW+P   L EGL  + +       FRKE ++  ++  + K
Sbjct: 388 DIKKAKLMLGWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 406

[Close]
BLAST of CSPI04G20430 vs. Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-11
Identity = 81/349 (23.21%), Postives = 147/349 (42.12%), Query Frame = 1 

Query: 56  KKNILIMGGTRFIGIFLSRLLVKEGHQVTL----FTRGKAPVTQQLPGES---------E 115
           +K ILI GG  F+G  L+  L+ +GH+VT+    FT  K  V   +  E+         E
Sbjct: 88  RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE 147

Query: 116 ADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKL-EQF 175
             Y +   +I HL       +++ + +     + +  +N         ++    ++  + 
Sbjct: 148 PLYIEV-DQIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARL 207

Query: 176 IYCSSAGVYLKSDLLPHFE-----VDAVDPKSRH-KGKLETESL----LASKDVNWTSIR 235
           +  S++ VY   ++ P  E     V+ + P++ + +GK   E++    +  + V     R
Sbjct: 208 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 267

Query: 236 PVYIYGP---LNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLANAFVQVLGNDK 295
               +GP   +N   V   F  +   G P+ +  SG Q     +V DL N  V ++ ++ 
Sbjct: 268 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV 327

Query: 296 ASQ-QVFNISGEKYVSFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFA 355
           +S   + N      + F  L K    +G     EI   +  + D  K+KP          
Sbjct: 328 SSPVNLGNPEEHTILEFAQLIKNLVGSGS----EIQFLSEAQDDPQKRKP---------- 387

Query: 356 SIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGK 377
            I+KAK +LGW+P   L EGL  + +       FRKE ++  ++  + K
Sbjct: 388 DIKKAKLMLGWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 406

[Close]
BLAST of CSPI04G20430 vs. TrEMBL
Match: A0A0A0KZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G500330 PE=4 SV=1)

HSP 1 Score: 777.7 bits (2007), Expect = 6.5e-222
Identity = 382/383 (99.74%), Postives = 382/383 (99.74%), Query Frame = 1 

Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP GGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]
BLAST of CSPI04G20430 vs. TrEMBL
Match: A0A067JHM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23195 PE=4 SV=1)

HSP 1 Score: 685.6 bits (1768), Expect = 3.4e-194
Identity = 333/380 (87.63%), Postives = 351/380 (92.37%), Query Frame = 1 

Query: 4   MANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNILIM 63
           MA  +A   Q   SFS+LPSS SDFNG RLH+Q+Q KRKV Q  G L VTAS  KNILIM
Sbjct: 1   MARLVAVQQQTQPSFSLLPSSFSDFNGTRLHSQIQCKRKVWQTKGALQVTASTSKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+TQQLPGES+ +YADF SKILHLKGDRKDF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDQEYADFSSKILHLKGDRKDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           +FVKSSLSA GFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 EFVKSSLSAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHAETD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN
Sbjct: 181 AVDPKSRHKGKLETESLLESKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 SGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEI 303
           SG+QITQLGHVKDLA AF+QVLGN+KAS+QVFNISGEKYV+FDGLA+ACAKAGGFPEPE+
Sbjct: 241 SGVQITQLGHVKDLAKAFIQVLGNEKASKQVFNISGEKYVTFDGLARACAKAGGFPEPEL 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFR 363
           VHYNPKEFDFGKKK FPFRDQHFFASIEKAK VLGWKPEFDLVEGLADSYNLDFGRGTFR
Sbjct: 301 VHYNPKEFDFGKKKAFPFRDQHFFASIEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTFR 360

Query: 364 KEADFSTDDIILGKSLVLQA 383
           KEADFSTDD+ILGKSLVLQA
Sbjct: 361 KEADFSTDDLILGKSLVLQA 380

[Close]
BLAST of CSPI04G20430 vs. TrEMBL
Match: A0A059B3W0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03311 PE=4 SV=1)

HSP 1 Score: 676.4 bits (1744), Expect = 2.0e-191
Identity = 328/382 (85.86%), Postives = 351/382 (91.88%), Query Frame = 1 

Query: 4   MANPMAAH--HQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNIL 63
           MA  MA    H   +S S+LPSS SDFNG+RLHA VQYKRKV QP G L VTAS+ K IL
Sbjct: 1   MAKLMAVQPQHHPPSSISLLPSSFSDFNGSRLHACVQYKRKVGQPKGALRVTASSNKKIL 60

Query: 64  IMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRK 123
           IMGGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+TQQLPGES+ D+ADF SKILHLKGDRK
Sbjct: 61  IMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDKDFADFSSKILHLKGDRK 120

Query: 124 DFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFE 183
           DFDFVKSSL+A GFDVVYDINGREADEV PI+DALP LEQFIYCSSAGVYLKSD LPH E
Sbjct: 121 DFDFVKSSLAAEGFDVVYDINGREADEVAPILDALPNLEQFIYCSSAGVYLKSDYLPHCE 180

Query: 184 VDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPI 243
            DAVDPKSRHKGKLETESLLAS+DVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIPI
Sbjct: 181 TDAVDPKSRHKGKLETESLLASRDVNWTSVRPVYIYGPLNYNPVEEWFFHRLKAGRPIPI 240

Query: 244 PNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEP 303
           PNSG QITQLGHVKDLA AF+QVLGN+KAS+QVFNISGEKYV+F+GLAKACAKA GFPEP
Sbjct: 241 PNSGTQITQLGHVKDLATAFIQVLGNEKASKQVFNISGEKYVTFEGLAKACAKAAGFPEP 300

Query: 304 EIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGT 363
           EI+HYNPKEFDFGKKK FPFRDQHFFAS++KAKSVLGWKPEFDLVEGLADSYNLDFGRGT
Sbjct: 301 EIIHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLVEGLADSYNLDFGRGT 360

Query: 364 FRKEADFSTDDIILGKSLVLQA 383
           FRK ADF+TDD+ILGKSLVLQ+
Sbjct: 361 FRKAADFTTDDMILGKSLVLQS 382

[Close]
BLAST of CSPI04G20430 vs. TrEMBL
Match: V4TB37_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001494mg PE=4 SV=1)

HSP 1 Score: 675.6 bits (1742), Expect = 3.5e-191
Identity = 321/380 (84.47%), Postives = 350/380 (92.11%), Query Frame = 1 

Query: 4   MANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPG-GLHVTASAKKNILIM 63
           MA+ +   HQ   SFS L SSLSDFNG R+H+Q+QY+RKV+QP  GL +TAS++KNILIM
Sbjct: 1   MASTVVVQHQTQPSFSTLTSSLSDFNGTRIHSQIQYRRKVLQPKVGLQITASSEKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+ QQLPGES+ ++A+F SKILHLKGDRKD+
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 120

Query: 124 DFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           DFVKSSLSA GFDVVYDINGREADEVEPI+DALP LEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 DFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
            VDPKSRHKGKL TES+L SK VNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 
Sbjct: 181 TVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPG 240

Query: 244 SGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEI 303
           SGIQ+TQLGHVKDLA AFVQVLGN+KAS+QVFNISGEKYV+FDGLA+ACAKA GFPEPE+
Sbjct: 241 SGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPEL 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFR 363
           VHYNPKEFDFGKKK FPFRDQHFFAS+EKAK VLGWKPEFDLVEGLADSYNLDFGRGT+R
Sbjct: 301 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYR 360

Query: 364 KEADFSTDDIILGKSLVLQA 383
           KEADFSTDD+ILGK LVLQA
Sbjct: 361 KEADFSTDDMILGKKLVLQA 380

[Close]
BLAST of CSPI04G20430 vs. TrEMBL
Match: A9PJN1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 7.7e-191
Identity = 327/380 (86.05%), Postives = 351/380 (92.37%), Query Frame = 1 

Query: 4   MANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNILIM 63
           MA  +A   Q   SFS+LPSSLSDFNG RLH+QVQ KR+V Q  G L V+AS+ KNILIM
Sbjct: 1   MARLVAVQQQTQPSFSLLPSSLSDFNGTRLHSQVQCKRRVWQTKGALQVSASSSKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+TQQLPGES+ DY+DF SKILHLKGDRKDF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDQDYSDFSSKILHLKGDRKDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           +FVK+SL+A GFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 EFVKTSLAAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHSEKD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKLETESLL S+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN
Sbjct: 181 AVDPKSRHKGKLETESLLESRGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 SGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEI 303
           SGIQ+TQLGHVKDLA AF+QVLGN+KASQQVFNISGEKYV+FDGLAKACAKA GFPEPEI
Sbjct: 241 SGIQMTQLGHVKDLAKAFIQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAAGFPEPEI 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFR 363
           VHYNPK+FDFGKKK FPFRDQHFFASI+KAK VLGW+PEFDLVEGLADSYNLDFGRGT+R
Sbjct: 301 VHYNPKDFDFGKKKAFPFRDQHFFASIDKAKHVLGWEPEFDLVEGLADSYNLDFGRGTYR 360

Query: 364 KEADFSTDDIILGKSLVLQA 383
           KEADF TDD+ILGKSLVLQA
Sbjct: 361 KEADFFTDDLILGKSLVLQA 380

[Close]
BLAST of CSPI04G20430 vs. TAIR10
Match: AT1G09340.1 (AT1G09340.1 chloroplast RNA binding)

HSP 1 Score: 664.1 bits (1712), Expect = 5.3e-191
Identity = 318/375 (84.80%), Postives = 348/375 (92.80%), Query Frame = 1 

Query: 8   MAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNILIMGGTR 67
           M   HQ   SFS+L SSLSDFNGA+LH QVQYKRKV QP G L+V+AS++K ILIMGGTR
Sbjct: 6   MLQQHQP--SFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTR 65

Query: 68  FIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVK 127
           FIG+FLSR+LVKEGHQVTLFTRGK+P+ +QLPGES+ D+ADF SKILHLKGDRKD+DFVK
Sbjct: 66  FIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVK 125

Query: 128 SSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDP 187
           SSLSA GFDVVYDINGREA+EVEPI++ALPKLEQ+IYCSSAGVYLKSD+LPH E DAVDP
Sbjct: 126 SSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDP 185

Query: 188 KSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQ 247
           KSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQ
Sbjct: 186 KSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQ 245

Query: 248 ITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEIVHYN 307
           I+QLGHVKDLA AF+ VLGN+KAS+++FNISGEKYV+FDGLAKACAKAGGFPEPEIVHYN
Sbjct: 246 ISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYN 305

Query: 308 PKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEAD 367
           PKEFDFGKKK FPFRDQHFFAS+EKAK VLGWKPEFDLVEGL DSYNLDFGRGTFRKEAD
Sbjct: 306 PKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEAD 365

Query: 368 FSTDDIILGKSLVLQ 382
           F+TDD+IL K LVLQ
Sbjct: 366 FTTDDMILSKKLVLQ 378

[Close]
BLAST of CSPI04G20430 vs. TAIR10
Match: AT3G63140.1 (AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa)

HSP 1 Score: 205.7 bits (522), Expect = 5.2e-53
Identity = 132/371 (35.58%), Postives = 196/371 (52.83%), Query Frame = 1 

Query: 16  TSFSVLPSSLSDFNGARLHAQVQYKRKVMQPGGLHVTASA---KKNILIM----GGTRFI 75
           +SFS L SS S  + + L   ++  R+ + P    V AS+   KKN+LI+    GG   I
Sbjct: 38  SSFSSLSSSSSS-SSSLLTFSLRTSRR-LSPQKFTVKASSVGEKKNVLIVNTNSGGHAVI 97

Query: 76  GIFLSRLLVKEGHQVTLFTRG--KAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVK 135
           G + ++ L+  GH VT+ T G   +   ++ P    ++      K +   G+  +   V 
Sbjct: 98  GFYFAKELLSAGHAVTILTVGDESSEKMKKPPFNRFSEIVSGGGKTVW--GNPAN---VA 157

Query: 136 SSLSAAGFDVVYDINGREADEVEPIIDALPK--LEQFIYCSSAGVYLKSDLLPHFEVDAV 195
           + +    FDVV D NG++ D V P++D      ++QF++ SSAG+Y  ++  PH E DAV
Sbjct: 158 NVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAV 217

Query: 196 DPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSG 255
              + H   +  E  LA    NW S RP Y+ G  N    EEWFF R+   R +PIP SG
Sbjct: 218 KADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSG 277

Query: 256 IQITQLGHVKDLANAFVQVLGN-DKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEIV 315
           +Q+T + HV+DL++     + N + AS  +FN   ++ V+ DG+AK CA A G    EIV
Sbjct: 278 LQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIV 337

Query: 316 HYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRK 375
           HY+PK      KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +K
Sbjct: 338 HYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKK 397

[Close]
BLAST of CSPI04G20430 vs. TAIR10
Match: AT1G12780.1 (AT1G12780.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-08
Identity = 83/347 (23.92%), Postives = 135/347 (38.90%), Query Frame = 1 

Query: 53  ASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKI 112
           +S ++NIL+ GG  FIG      L+K+G +V++       V + +    E    D   K+
Sbjct: 3   SSVEQNILVTGGAGFIGTHTVVQLLKDGFKVSIIDNFDNSVIEAVDRVRELVGPDLSKKL 62

Query: 113 LHLKGDRKDFDFVKSSLSAAGFDVVYDINGREA--DEVE--------------PIIDALP 172
               GD ++   ++   S   FD V    G +A  + VE               + + + 
Sbjct: 63  DFNLGDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYETMA 122

Query: 173 K--LEQFIYCSSAGVYLKSDLLP---HFEVDAVDPKSRHKGKLETESL-LASKDVNWTSI 232
           K   +  ++ SSA VY + + +P    FE+ A++P  R K  LE  +  +   +  W  I
Sbjct: 123 KYNCKMMVFSSSATVYGQPEKIPCMEDFELKAMNPYGRTKLFLEEIARDIQKAEPEWRII 182

Query: 233 RPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNS---GIQITQLGHVKDLANAFVQVLGND 292
              Y      +NPV       +    P  IPN+    IQ   +G + +L      V G+D
Sbjct: 183 LLRY------FNPVGAHESGSI-GEDPKGIPNNLMPYIQQVAVGRLPEL-----NVYGHD 242

Query: 293 KASQQVFNISGEKYVS--FDGLAKACAKAGGFPEPEIVHYN--------------PKEFD 352
             ++    +    +V    DG   A  K    P+     YN                E  
Sbjct: 243 YPTEDGSAVRDYIHVMDLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKA 302

[Close]
BLAST of CSPI04G20430 vs. NCBI nr
Match: gi|449457309|ref|XP_004146391.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis sativus])

HSP 1 Score: 777.7 bits (2007), Expect = 9.3e-222
Identity = 382/383 (99.74%), Postives = 382/383 (99.74%), Query Frame = 1 

Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP GGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]
BLAST of CSPI04G20430 vs. NCBI nr
Match: gi|659082960|ref|XP_008442117.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis melo])

HSP 1 Score: 769.6 bits (1986), Expect = 2.5e-219
Identity = 377/383 (98.43%), Postives = 380/383 (99.22%), Query Frame = 1 

Query: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNI 60
           MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP GGLHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120
           LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLA AFVQVLGNDKASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360
           PEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVLGWKPEFDLVEGLADSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

Query: 361 TFRKEADFSTDDIILGKSLVLQA 383
           TFRKEADFSTDDIILGKSLVLQA
Sbjct: 361 TFRKEADFSTDDIILGKSLVLQA 383

[Close]
BLAST of CSPI04G20430 vs. NCBI nr
Match: gi|1009116591|ref|XP_015874856.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 686.0 bits (1769), Expect = 3.7e-194
Identity = 329/370 (88.92%), Postives = 348/370 (94.05%), Query Frame = 1 

Query: 14  KFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNILIMGGTRFIGIFL 73
           K  SFS+LPSSLSDFNG RL  Q+QYK+KV QP G LHVTAS+KK ILIMGGTRFIG+FL
Sbjct: 12  KHPSFSLLPSSLSDFNGIRLQTQLQYKKKVYQPKGALHVTASSKKKILIMGGTRFIGVFL 71

Query: 74  SRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAA 133
           SRLLVK+GHQVTLFTRGKAP+T+QLPGES+ DY DF SKILHLKGDRKDFDFVKSSLSA 
Sbjct: 72  SRLLVKDGHQVTLFTRGKAPITKQLPGESDKDYTDFSSKILHLKGDRKDFDFVKSSLSAE 131

Query: 134 GFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKG 193
           GFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHFE DAVDPKSRHKG
Sbjct: 132 GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFETDAVDPKSRHKG 191

Query: 194 KLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGH 253
           KLETESLL S+DVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGH
Sbjct: 192 KLETESLLKSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGH 251

Query: 254 VKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEIVHYNPKEFDF 313
           VKDLA  F  VLGN+KAS+QVFNISGEKYV+FDGLA+ACAKAGGFPEPEI+HYNPKEFDF
Sbjct: 252 VKDLAKVFADVLGNEKASKQVFNISGEKYVTFDGLARACAKAGGFPEPEIIHYNPKEFDF 311

Query: 314 GKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDI 373
           GKKK FPFRDQHFFAS+EKAKSVLGWKPEFDLVEGLADSYNLDFGRGT+RKEADF TDDI
Sbjct: 312 GKKKAFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTYRKEADFETDDI 371

Query: 374 ILGKSLVLQA 383
           ILGKSLVLQ+
Sbjct: 372 ILGKSLVLQS 381

[Close]
BLAST of CSPI04G20430 vs. NCBI nr
Match: gi|802755325|ref|XP_012088856.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas])

HSP 1 Score: 685.6 bits (1768), Expect = 4.8e-194
Identity = 333/380 (87.63%), Postives = 351/380 (92.37%), Query Frame = 1 

Query: 4   MANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQP-GGLHVTASAKKNILIM 63
           MA  +A   Q   SFS+LPSS SDFNG RLH+Q+Q KRKV Q  G L VTAS  KNILIM
Sbjct: 1   MARLVAVQQQTQPSFSLLPSSFSDFNGTRLHSQIQCKRKVWQTKGALQVTASTSKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+TQQLPGES+ +YADF SKILHLKGDRKDF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDQEYADFSSKILHLKGDRKDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           +FVKSSLSA GFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 EFVKSSLSAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHAETD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN
Sbjct: 181 AVDPKSRHKGKLETESLLESKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 SGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEI 303
           SG+QITQLGHVKDLA AF+QVLGN+KAS+QVFNISGEKYV+FDGLA+ACAKAGGFPEPE+
Sbjct: 241 SGVQITQLGHVKDLAKAFIQVLGNEKASKQVFNISGEKYVTFDGLARACAKAGGFPEPEL 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFR 363
           VHYNPKEFDFGKKK FPFRDQHFFASIEKAK VLGWKPEFDLVEGLADSYNLDFGRGTFR
Sbjct: 301 VHYNPKEFDFGKKKAFPFRDQHFFASIEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTFR 360

Query: 364 KEADFSTDDIILGKSLVLQA 383
           KEADFSTDD+ILGKSLVLQA
Sbjct: 361 KEADFSTDDLILGKSLVLQA 380

[Close]
BLAST of CSPI04G20430 vs. NCBI nr
Match: gi|568836420|ref|XP_006472242.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Citrus sinensis])

HSP 1 Score: 677.2 bits (1746), Expect = 1.7e-191
Identity = 323/380 (85.00%), Postives = 351/380 (92.37%), Query Frame = 1 

Query: 4   MANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPG-GLHVTASAKKNILIM 63
           MA+ +   HQ   SFS L SSLSDFNG R+H+Q+QY+RKV+QP  GL VTAS++KNILIM
Sbjct: 1   MASMVVVQHQTQPSFSTLTSSLSDFNGTRIHSQIQYRRKVLQPKVGLQVTASSEKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+ QQLPGES+ ++A+F SKILHLKGDRKD+
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDEEFAEFSSKILHLKGDRKDY 120

Query: 124 DFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           DFVKSSLSA GFDVVYDINGREADEVEPI+DALP LEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 DFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKL TES+L SK VNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIPIP 
Sbjct: 181 AVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPG 240

Query: 244 SGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPEPEI 303
           SGIQ+TQLGHVKDLA AFVQVLGN+KAS+QVFNISGEKYV+FDGLA+ACAKA GFPEPE+
Sbjct: 241 SGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPEL 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFR 363
           VHYNPKEFDFGKKK FPFRDQHFFAS+EKAK VLGWKPEFDLVEGLADSYNLDFGRGT+R
Sbjct: 301 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYR 360

Query: 364 KEADFSTDDIILGKSLVLQA 383
           KEADFSTDD+ILGK LVLQA
Sbjct: 361 KEADFSTDDMILGKKLVLQA 380

The following BLAST results are available for this feature:
BLAST of CSPI04G20430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CP41B_ARATH9.4e-19084.80Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ... [more]
CP41A_ARATH9.1e-5235.58Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ... [more]
UXS1_RAT6.0e-1123.21UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1[more]
UXS1_MOUSE6.0e-1123.21UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=1 SV=1[more]
UXS1_HUMAN6.0e-1123.21UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1[more]
BLAST of CSPI04G20430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ66_CUCSA6.5e-22299.74Uncharacterized protein OS=Cucumis sativus GN=Csa_4G500330 PE=4 SV=1[more]
A0A067JHM3_JATCU3.4e-19487.63Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23195 PE=4 SV=1[more]
A0A059B3W0_EUCGR2.0e-19185.86Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03311 PE=4 SV=1[more]
V4TB37_9ROSI3.5e-19184.47Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001494mg PE=4 SV=1[more]
A9PJN1_9ROSI7.7e-19186.05Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
BLAST of CSPI04G20430 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09340.15.3e-19184.80 chloroplast RNA binding[more]
AT3G63140.15.2e-5335.58 chloroplast stem-loop binding protein of 41 kDa[more]
AT1G12780.18.6e-0823.92 UDP-D-glucose/UDP-D-galactose 4-epimerase 1[more]
BLAST of CSPI04G20430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457309|ref|XP_004146391.1|9.3e-22299.74PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc... [more]
gi|659082960|ref|XP_008442117.1|2.5e-21998.43PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc... [more]
gi|1009116591|ref|XP_015874856.1|3.7e-19488.92PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Ziz... [more]
gi|802755325|ref|XP_012088856.1|4.8e-19487.63PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jat... [more]
gi|568836420|ref|XP_006472242.1|1.7e-19185.00PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cit... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050662coenzyme binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0007623 circadian rhythm
biological_process GO:0005996 monosaccharide metabolic process
biological_process GO:0032544 plastid translation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0045727 positive regulation of translation
biological_process GO:0006364 rRNA processing
biological_process GO:0008150 biological_process
cellular_component GO:0005773 vacuole
cellular_component GO:0010319 stromule
cellular_component GO:0005840 ribosome
cellular_component GO:0009506 plasmodesma
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005777 peroxisome
cellular_component GO:0016020 membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0048046 apoplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0010297 heteropolysaccharide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G20430.1CSPI04G20430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001509NAD-dependent epimerase/dehydratase, N-terminal domainPFAMPF01370Epimerasecoord: 59..276
score: 5.8
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 56..239
score: 2.0
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 56..350
score: 4.0
NoneNo IPR availableGENE3DG3DSA:3.90.25.10coord: 240..351
score: 1.2
NoneNo IPR availablePANTHERPTHR10366NAD DEPENDENT EPIMERASE/DEHYDRATASEcoord: 58..378
score: 4.9E
NoneNo IPR availablePANTHERPTHR10366:SF289CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA B, CHLOROPLASTICcoord: 58..378
score: 4.9E