CSPI04G20130 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G20130
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	E3 ubiquitin-protein ligase CHFR
Location	Chr4 : 18188790 .. 18192468 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTGTTTCATTTCAAAATTCTCAATCTTCTCCTTCTCCTACTGGCGGTATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCATCCATGGAAAACTGGGCGAAGCTAAGTATGTTTCATCTTCCCATGTCTCTCCTCCCTGAGTTCTTCTCAGTCTGTCTCTTGTTTGACTGATCCGATGGCTAATCCGTTTTGCATTAGTGGATTCTCTGTTTCATTTGCTTTTGCTCAGCATTTGAGAATTGGGCATTTTTTTTATAATTTTTTTTGCATTCTTTGCAAACAAAAATTTGTTACTATCCTGAAAAAGTTTTCTTCAGTTTGAAGTCTGGGTTGAAATTACTGGGGAAGATAATGTCATCGAGGAAATAATTTTGGTGGTACGGGAGTTGAACTAGGTTTGACAATGATGGAAGTTCAATGTTTCATTTGTATTTGATTTCATGAACTGTTAGCAGTATGATTTACATAGTAGAAGGTAATTGTCTCACTAATGTTTCTTTCGGTGTTTTAAATTCATTTTAGGGAAATAGGCAGACAGTATAGAAATTAAAGAATTTCTATTTTGATGAAAGATATACAAGAGGAAGAAGAACGATTAGGAATCGTACTCTCCCACTTAACTTAAATGATCACAGAAAGCATGGGAAAATTTTACAAGAACATCCATGCAAAGAACACATCTAGTCATCGAAAACGATCAAATGAATCAAAGTTTATTTAACCTCTCTGAATTTATAGCTCAAAATCTATATATCTTCCATTCCAATTTTCTCAAAATTTTTTTACTTTAACATGAAAAAGTGACGGGATAAAGCTTTCACGTTCTTAGAAGGATTCCCATACCCTTGAGGAAATGATTACATTAAAGTTTGTCTCAATTTCCATGAACAAGGTAGTTGTAATACGATCATGGATTTGCATGAATTAAAATTGATGGTGGATTGAAAATTATTCTTGAACATATTTGTCATTAAAATATATGTATTTATATTAGAAAAAAAAACAAGAAACACAAAATTTCACAAATGATTGAAAATTTATAAAAGAGTACAAGGATTCAAAGACTACAATGTGTAGACGTGGGAAAACAAAAGTTGCAAGTGGAAGAAAATTGCAAAATAGAAAGAGGGAAAGCTATAACTTGACCATAAAAAAAGCCTCTCAATCGTTTATTGTCATTTACAGATCTTAATATCAAGATTACACCTTTGGGATGATTTCCTTTCAAGAAGCCTTTCTTTCAATTTCCTATGTTGGAATTTTGGTTGCTACCACTTATCTTGAATAGCTATTTTTCTTCCTCTAATACCAAAAAATGATGTAATCTAGCATCTAAGTGAATAATCTCGAAGAATACTCAACCAAGCTGTTACTGTTATTCAAACAGTATTTTAATTACAAGAGATTATCCCTTTATTTTAGTTTGAATTTGTTGGTTTTAATTTGTTATCTGTTAGTTCTCAATACTTAGTCGGTCCCCCTTCGGCTAGTTGGGGTGTTTTGGTGGGCTGGTTGTTTTTGTATGCCCATGTATCCTTTTATTTTTTCTCAATGAAAGCAGGTTGTTTTATCAAAAGAAAAAAAAAAGAAGAAAAAAACAAATTAAAACTAAATTACAAGGATACCTAGTCATGCTACATCATACTTGTCTTGTGTGTTCCTGGATTGTGCATTTTCTTACTTTATTCTTTAGGTTTTTTTAGTAGACTGCAGACATTGGTTATTAATAATTTCTATGAAAGAGTTATTTTTAAATTTATTGGAAAATTTTAAAATATCTATTACATACCACTAGGTTCGCTATCATAATTGTTTAGCAATTCCTTGAGCATAAGCTAATAACTATAAAGTTCAGAAATTTATTGTTTATGCTTTTTTAACCAAATATGAAGTTGAAAGGTTTTGTTGAGTTTAGGCTTACATGTGGGAGAGTGAACAAAATTTTAGGCTTACGTTTAGAGGCATTTACTTTCTTATAAAGGAGAAAAATGAAAAAATAGTTTAATTAAAAGTTAAGACCTTTTAATATGGAATAAACATTTATCCATTATTTATTCATTTATTATAAGAAACTGAATATCATCAAAAGGATAAGTAAATGTTTATATGAATCCACATGTTTTAATATGTACTTAGGTATGTTTCTATAATTTCTTCAATTTTTTTTCTTTTTGAAATGAGATGGAAAATTTCCGTTGACAAAATGAAAAATTACATATAAGATGTTTGCAAGCTCCAAGTGTTTCTTGGCATACAATGCAAACAAGAAGAGAAGTACTATGTGAGAGCCATTGTTTAGAGGTATATTAGCACTATTGGTATGAATATGAGCAAGGGCATATTAGTAATAGCTAGTAAGTTGGTTAGGACTTTTAGTTACAAATAGAGGGAGTGGGATGGGGAGGAAGGTGTGGAGGTTTTAGTAAAATTTCCAGTGGAGAATTTGGGAGAGAGTAGCCCTCTTGATATTGCTCTTATATTTTAGTTTCTTCATTGATATTACAATTATATTTCTATCTTCCTATTTTTTTTATATTCTTTGTTGTTCTCGAGTGTTCTTGTTAGATGGGAACCCTAAATACTCAAATGTTTATAATCTATTGCAATTTTCTAATTAAAGAAATGAAAAAAACTACTGCATTATATATTGGCATCATTTTTTGAAGTTAATTAGCCATCTTATTTTTTTCTTTTCCAGTTCCAACTGATAAAATGTATGCGGATATTGAGATAAACTCTGATGAGACGGTTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACATGAATGGTGCAAAATCACAAGGAATTCAGATCTAAATACTGCCACTCTGCAGAATAGAAGGTAATATGCTGTACAACAAAGTAATTAGTGTTTGAATCAAATGATATCCTTATCCCCATAAATCAAAGCTCCAATACGTTTTTGGTCCAGGCTTTTAAGATCTCATATAAAATTGTAAACCTTAGAAAAATTTTCCACTTTTACCCTTAAGGACTCTATTGGAGCTTTGGTATCAAAGTTCAGTAAACAAATACGATGAAGTTTCATGATTTTACACTGATAGCAGATTAGCTAGCTGATAGGAAGACCATGGGAGTTAGGTGTAAATTTCACCCAGGATCTTGACTTTTAGTGTTTAGGTAGAATGTTGATGAGAAAATTTTGTTTTCTCAATAATCTTGCTTTTATTTTTCAATGTTGTTGTAACCCTAAACCCTAATTTTTTTTGAAAAGGAAACCAGCCTCTTTATTGATAAGAATAACGTATTTCAAGGTACAAAAGGTTTATATTTTTTTTGAAATGGAGACAAGAATTTCTTTATTAAAAATAACTCAAAGTACAAGAGAGTTAGAGTCAGACAAAGAGAGCCAAAAAGAAATAGTAATCAAAGGAGACCAAGAGGGATTAGGAGGTGCACCCAGACATCTCAACTAGGTTGACACCGCCTTAGTGCTCTCACATTATATCCAACAAAAATAATACCCAAAGTACAAATTAAAGTCTGTCCAGAGTACAAACAACATGTGCTGTGGAGCCAAACAAAAACTACAAACAACATCGAAAAAACAGCAGCAGTACAAATCAGTAAAACAATTAATCTTTCAGTGGTGGCTGCAGACCACCATTCATGAAGAAAGTGACTACTAATGATTTGGTAAAATGA

mRNA sequence

ATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCATCCATGGAAAACTGGGCGAAGCTAATTCCAACTGATAAAATGTATGCGGATATTGAGATAAACTCTGATGAGACGGTTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACATGAATGGTGCAAAATCACAAGGAATTCAGATCTAAATACTGCCACTCTGCAGAATAGAAGACCACCATTCATGAAGAAAGTGACTACTAATGATTTGGTAAAATGA

Coding sequence (CDS)

ATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCATCCATGGAAAACTGGGCGAAGCTAATTCCAACTGATAAAATGTATGCGGATATTGAGATAAACTCTGATGAGACGGTTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACATGAATGGTGCAAAATCACAAGGAATTCAGATCTAAATACTGCCACTCTGCAGAATAGAAGACCACCATTCATGAAGAAAGTGACTACTAATGATTTGGTAAAATGA

Homology

[Close]

BLAST of CSPI04G20130 vs. TrEMBL
Match: A0A0A0KYR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508530 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60
          MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS
Sbjct: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60

Query: 61 DLNTATLQNR 71
          DLNTATLQNR
Sbjct: 61 DLNTATLQNR 70

[Close]

BLAST of CSPI04G20130 vs. TrEMBL
Match: A0A067F5J8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019461mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-17
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60
          MAE+GECSAS  S E WAKL P+D  +AD++I+S+E VI SE  S+S +KHEWCKITRNS
Sbjct: 1  MAEVGECSASKPSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNS 60

Query: 61 DLNTATLQNR 71
          DL++A +QN+
Sbjct: 61 DLHSAKMQNK 70

[Close]

BLAST of CSPI04G20130 vs. TrEMBL
Match: B9N5A6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s14500g PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 3  EIGECSA---SNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRN 62
          E GECS+   S+SS E WAKL+P+D  Y+D+EI S+E VI SE  STS+EKHEWCKITRN
Sbjct: 2  EFGECSSGSNSSSSNEAWAKLVPSDSRYSDVEIRSNEMVICSEITSTSLEKHEWCKITRN 61

Query: 63 SDLNTATLQNR 71
          SD ++A +QN+
Sbjct: 62 SDQSSAMMQNK 72

[Close]

BLAST of CSPI04G20130 vs. TrEMBL
Match: V4SGG1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024761mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-15
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 4   IGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNSDLN 63
           +GECSAS  S E WAKL P+D  +AD++I+S+E VI SE  S+S +KHEWCKITRNSDL+
Sbjct: 729 VGECSASKPSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLH 788

Query: 64  TATLQNR 71
           +A +QN+
Sbjct: 789 SAKMQNK 795

[Close]

BLAST of CSPI04G20130 vs. TrEMBL
Match: A0A0S3QY52_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G065300 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 1  MAEIGECSASNSSM---ENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKIT 60
          M E GECS+S S+    E WAKL+P+D+ Y+D+EI SDE VI SE  + S +KH WCKI 
Sbjct: 1  MEETGECSSSTSAKHLDEIWAKLVPSDERYSDVEIRSDEKVISSEISANSSDKHSWCKIV 60

Query: 61 RNSDLNTATLQNR 71
          RN DL +AT++N+
Sbjct: 61 RNPDLCSATMENK 73

[Close]

BLAST of CSPI04G20130 vs. TAIR10
Match: AT1G47570.1 (AT1G47570.1 RING/U-box superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 5.8e-13
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 2  AEIGECSASNSSMEN-WAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 61
          AE G+ S S  S ++ WAKL+P D  ++DIEI  ++ VI SE K +S+EKHEWC+IT+N 
Sbjct: 5  AETGQSSGSKPSDDDAWAKLVPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNL 64

Query: 62 DLNTATLQNR 71
            ++AT+ N+
Sbjct: 65 GQSSATIHNK 74

[Close]

BLAST of CSPI04G20130 vs. NCBI nr
Match: gi|778695005|ref|XP_011653909.1| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60
          MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS
Sbjct: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60

Query: 61 DLNTATLQNR 71
          DLNTATLQNR
Sbjct: 61 DLNTATLQNR 70

[Close]

BLAST of CSPI04G20130 vs. NCBI nr
Match: gi|700199667|gb|KGN54825.1| (hypothetical protein Csa_4G508530 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60
          MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS
Sbjct: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60

Query: 61 DLNTATLQNR 71
          DLNTATLQNR
Sbjct: 61 DLNTATLQNR 70

[Close]

BLAST of CSPI04G20130 vs. NCBI nr
Match: gi|778695009|ref|XP_004146401.2| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60
          MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS
Sbjct: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60

Query: 61 DLNTATLQNR 71
          DLNTATLQNR
Sbjct: 61 DLNTATLQNR 70

[Close]

BLAST of CSPI04G20130 vs. NCBI nr
Match: gi|778695012|ref|XP_011653910.1| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60
          MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS
Sbjct: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60

Query: 61 DLNTATLQNR 71
          DLNTATLQNR
Sbjct: 61 DLNTATLQNR 70

[Close]

BLAST of CSPI04G20130 vs. NCBI nr
Match: gi|659082892|ref|XP_008442085.1| (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-30
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNS 60
          MAEIGECSASNSS+ENWAKLIPTDKMY DIEINSDETVIFSETKSTSVEKHEWCKITRNS
Sbjct: 1  MAEIGECSASNSSLENWAKLIPTDKMYVDIEINSDETVIFSETKSTSVEKHEWCKITRNS 60

Query: 61 DLNTATLQNR 71
          DLNTATLQNR
Sbjct: 61 DLNTATLQNR 70

The following BLAST results are available for this feature:

BLAST of CSPI04G20130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G20130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYR0_CUCSA	2.4e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508530 PE=4 SV=1	[more]
A0A067F5J8_CITSI	7.4e-17	62.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019461mg PE=4 SV=1	[more]
B9N5A6_POPTR	1.4e-15	61.97	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s14500g PE=4 SV=1	[more]
V4SGG1_9ROSI	3.1e-15	61.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024761mg PE=4 SV=1	[more]
A0A0S3QY52_PHAAN	1.7e-13	54.79	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G065300 PE=...	[more]

BLAST of CSPI04G20130 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47570.1	5.8e-13	48.57	RING/U-box superfamily protein	[more]

BLAST of CSPI04G20130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695005\|ref\|XP_011653909.1\|	3.4e-31	100.00	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus]	[more]
gi\|700199667\|gb\|KGN54825.1\|	3.4e-31	100.00	hypothetical protein Csa_4G508530 [Cucumis sativus]	[more]
gi\|778695009\|ref\|XP_004146401.2\|	3.4e-31	100.00	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]	[more]
gi\|778695012\|ref\|XP_011653910.1\|	3.4e-31	100.00	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis sativus]	[more]
gi\|659082892\|ref\|XP_008442085.1\|	2.2e-30	97.14	PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G20130.1	CSPI04G20130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G20130	Cucurbita pepo (Zucchini)	cpecpiB067
CSPI04G20130	Cucurbita pepo (Zucchini)	cpecpiB075
CSPI04G20130	Cucurbita pepo (Zucchini)	cpecpiB493
CSPI04G20130	Bottle gourd (USVL1VR-Ls)	cpilsiB249
CSPI04G20130	Melon (DHL92) v3.6.1	cpimedB325
CSPI04G20130	Cucumber (Gy14) v2	cgybcpiB170
CSPI04G20130	Silver-seed gourd	carcpiB0319
CSPI04G20130	Silver-seed gourd	carcpiB0552
CSPI04G20130	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G20130	Cucumber (Chinese Long) v3	cpicucB214
CSPI04G20130	Watermelon (97103) v2	cpiwmbB300
CSPI04G20130	Watermelon (97103) v2	cpiwmbB308
CSPI04G20130	Watermelon (97103) v2	cpiwmbB314
CSPI04G20130	Wax gourd	cpiwgoB396
CSPI04G20130	Wax gourd	cpiwgoB403
CSPI04G20130	Cucurbita maxima (Rimu)	cmacpiB673
CSPI04G20130	Cucurbita maxima (Rimu)	cmacpiB676
CSPI04G20130	Cucurbita maxima (Rimu)	cmacpiB890
CSPI04G20130	Cucurbita moschata (Rifu)	cmocpiB667
CSPI04G20130	Cucurbita moschata (Rifu)	cmocpiB868
CSPI04G20130	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G20130	Cucumber (Chinese Long) v2	cpicuB187
CSPI04G20130	Melon (DHL92) v3.5.1	cpimeB324
CSPI04G20130	Melon (DHL92) v3.5.1	cpimeB334
CSPI04G20130	Watermelon (Charleston Gray)	cpiwcgB309
CSPI04G20130	Watermelon (Charleston Gray)	cpiwcgB321
CSPI04G20130	Watermelon (97103) v1	cpiwmB339
CSPI04G20130	Watermelon (97103) v1	cpiwmB348