CSPI04G15190 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G15190
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 12627719 .. 12628192 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGTTCATATGGTTATTACAGCCATGAATATCCTTATACTCATAAAAGATCATATCCTAAGTACAATGCAGCAGTTCCTTCTCCTCATCGTGCTCGTGACACTAGCTATCGTGAATATGAGGACTATTATCCTCATCGGCCTTCTCGTAATTATCAAGGATACCCCAAGTATGATGCACCAACATCAAAAGCTCCTCCTCCTCATCAATGTCGTCCTAGGCGTAGCTATCATGAATATAAGGATTATTATCCTTATACTTCTCGTAATTATCAAGGATACCCCAATAATTATGGCTATGCCGCCCATTACAGCGTTCCCGACTACCCTTATCAAAATTATGGATCGCCGACAAAGGCGTCGTCGGGATGTGGGGGAATGCTTCGAAAGTCAATGTTTGCTATTGTTGGAAGATTGATCGTTGGCGTGATATCTAGTTTTGTTCTTGGATTCCCTATTGGCCTGATCTAA

mRNA sequence

ATGAATAGTTCATATGGTTATTACAGCCATGAATATCCTTATACTCATAAAAGATCATATCCTAAGTACAATGCAGCAGTTCCTTCTCCTCATCGTGCTCGTGACACTAGCTATCGTGAATATGAGGACTATTATCCTCATCGGCCTTCTCGTAATTATCAAGGATACCCCAAGTATGATGCACCAACATCAAAAGCTCCTCCTCCTCATCAATGTCGTCCTAGGCGTAGCTATCATGAATATAAGGATTATTATCCTTATACTTCTCGTAATTATCAAGGATACCCCAATAATTATGGCTATGCCGCCCATTACAGCGTTCCCGACTACCCTTATCAAAATTATGGATCGCCGACAAAGGCGTCGTCGGGATGTGGGGGAATGCTTCGAAAGTCAATGTTTGCTATTGTTGGAAGATTGATCGTTGGCGTGATATCTAGTTTTGTTCTTGGATTCCCTATTGGCCTGATCTAA

Coding sequence (CDS)

ATGAATAGTTCATATGGTTATTACAGCCATGAATATCCTTATACTCATAAAAGATCATATCCTAAGTACAATGCAGCAGTTCCTTCTCCTCATCGTGCTCGTGACACTAGCTATCGTGAATATGAGGACTATTATCCTCATCGGCCTTCTCGTAATTATCAAGGATACCCCAAGTATGATGCACCAACATCAAAAGCTCCTCCTCCTCATCAATGTCGTCCTAGGCGTAGCTATCATGAATATAAGGATTATTATCCTTATACTTCTCGTAATTATCAAGGATACCCCAATAATTATGGCTATGCCGCCCATTACAGCGTTCCCGACTACCCTTATCAAAATTATGGATCGCCGACAAAGGCGTCGTCGGGATGTGGGGGAATGCTTCGAAAGTCAATGTTTGCTATTGTTGGAAGATTGATCGTTGGCGTGATATCTAGTTTTGTTCTTGGATTCCCTATTGGCCTGATCTAA
Homology
[Close]
BLAST of CSPI04G15190 vs. TrEMBL
Match: A0A0A0KXB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297410 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 70/98 (71.43%), Postives = 76/98 (77.55%), Query Frame = 1 

Query: 1  MNSSYGYYSHEYPYTHKRSYPKYNAAVPSPHRARDTSYREYEDYYPHRPSRNYQG-YPKY 60
          MNS+YGY+S EY Y HKRSYPKY A V  PHRAR TSY EYEDYYPHR   NYQG YPKY
Sbjct: 6  MNSTYGYHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSPCNYQGRYPKY 65

Query: 61 DAPTSKAPPP-HQCRPRRSYHEYKDYYPYTSRNYQGYP 97
          DAP ++APPP HQC    SYHEY+DYYPY S  Y+GYP
Sbjct: 66 DAPPTRAPPPDHQC----SYHEYEDYYPYQSSLYEGYP 99

[Close]
BLAST of CSPI04G15190 vs. TrEMBL
Match: A0A0A0L2C5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297420 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 92  YQGYPNNYGYAAHYSVPDYPYQNYGSPTKASSGCGGM-LRKSMFAIVGRLIVGVISSFVL 151
           + G+  +YGYAA YSVPDY Y      T+ASSG GG  L KSMFA+VGRL VGV+SSFV 
Sbjct: 235 HYGHYGHYGYAAPYSVPDYSYP----ATEASSGSGGKKLGKSMFALVGRLTVGVMSSFVF 294

Query: 152 GFPIG 156
           GFPIG
Sbjct: 295 GFPIG 295

[Close]
BLAST of CSPI04G15190 vs. NCBI nr
Match: gi|659069470|ref|XP_008450016.1| (PREDICTED: phospholipase D beta 1-like [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-33
Identity = 84/137 (61.31%), Postives = 93/137 (67.88%), Query Frame = 1 

Query: 1   MNSSYGYYSHEYPYTHKRSYPKYNAAVPSPHRARDTSYREYEDYYPHRPSRNYQGYPKYD 60
           MN+ YGYYSH YPY HKRSYPKY AAVP    A  TSY EYEDYYP+ PSRNYQGYPKYD
Sbjct: 1   MNNPYGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPY-PSRNYQGYPKYD 60

Query: 61  APTSKAPPPHQCRPRRSYHEYKDYYPYTSRNYQGYPNNYGYAAHYSVPDYPY--QNYGSP 120
           APT+KAPPPHQC    SYHEY+DYYPY SRNYQGYP  Y      + P + Y  +  GS 
Sbjct: 61  APTTKAPPPHQC----SYHEYEDYYPYPSRNYQGYP-KYDAPTTKAPPSHQYRPKKEGSL 120

Query: 121 TKASSGCGGMLRKSMFA 136
           T   S   G +  S  +
Sbjct: 121 TSMLSSVAGSIGASFIS 131

[Close]
BLAST of CSPI04G15190 vs. NCBI nr
Match: gi|700199132|gb|KGN54290.1| (hypothetical protein Csa_4G297410 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 70/98 (71.43%), Postives = 76/98 (77.55%), Query Frame = 1 

Query: 1  MNSSYGYYSHEYPYTHKRSYPKYNAAVPSPHRARDTSYREYEDYYPHRPSRNYQG-YPKY 60
          MNS+YGY+S EY Y HKRSYPKY A V  PHRAR TSY EYEDYYPHR   NYQG YPKY
Sbjct: 6  MNSTYGYHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSPCNYQGRYPKY 65

Query: 61 DAPTSKAPPP-HQCRPRRSYHEYKDYYPYTSRNYQGYP 97
          DAP ++APPP HQC    SYHEY+DYYPY S  Y+GYP
Sbjct: 66 DAPPTRAPPPDHQC----SYHEYEDYYPYQSSLYEGYP 99

[Close]
BLAST of CSPI04G15190 vs. NCBI nr
Match: gi|659069135|ref|XP_008448327.1| (PREDICTED: uncharacterized protein LOC103490554 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 92  YQGYPNNYGYAAHYSVPDYPYQNYGSPTKASSGCGGMLRKSMFAIVGRLIVGVISSFVLG 151
           + G+  +YGYAA YSVPDYPY+     T+ SSG GG L KSMFA+VGRL +GV+SSFV G
Sbjct: 237 HYGHYGHYGYAAPYSVPDYPYR---PATETSSGNGGKLGKSMFALVGRLTIGVMSSFVFG 296

Query: 152 FPI 155
           FPI
Sbjct: 297 FPI 296

[Close]
BLAST of CSPI04G15190 vs. NCBI nr
Match: gi|449448874|ref|XP_004142190.1| (PREDICTED: uncharacterized protein LOC101223041 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 92  YQGYPNNYGYAAHYSVPDYPYQNYGSPTKASSGCGGM-LRKSMFAIVGRLIVGVISSFVL 151
           + G+  +YGYAA YSVPDY Y      T+ASSG GG  L KSMFA+VGRL VGV+SSFV 
Sbjct: 235 HYGHYGHYGYAAPYSVPDYSYP----ATEASSGSGGKKLGKSMFALVGRLTVGVMSSFVF 294

Query: 152 GFPIG 156
           GFPIG
Sbjct: 295 GFPIG 295

The following BLAST results are available for this feature:
BLAST of CSPI04G15190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G15190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXB0_CUCSA1.6e-2871.43Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297410 PE=4 SV=1[more]
A0A0A0L2C5_CUCSA1.2e-0964.62Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297420 PE=4 SV=1[more]
BLAST of CSPI04G15190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G15190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069470|ref|XP_008450016.1|3.0e-3361.31PREDICTED: phospholipase D beta 1-like [Cucumis melo][more]
gi|700199132|gb|KGN54290.1|2.2e-2871.43hypothetical protein Csa_4G297410 [Cucumis sativus][more]
gi|659069135|ref|XP_008448327.1|2.1e-1063.49PREDICTED: uncharacterized protein LOC103490554 [Cucumis melo][more]
gi|449448874|ref|XP_004142190.1|1.8e-0964.62PREDICTED: uncharacterized protein LOC101223041 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G15190.1CSPI04G15190.1mRNA