CSPI04G11610 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G11610
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr4 : 9941503 .. 9942914 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTCATACCTTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATACCATGACCAAAGTGTTATATGTTGGCCCTGATACTTGTTCGATGATTTCCAAATTACTCATAGTCGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGACTCTGATTCTAGTTACTTCCATTGCTGGGATCTCATCCATAAAGGCATCATCCGTGTTGCCGATGTTAAGTTTGATCTGCCTTATGAGAAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATACTTCTCTTCACGATACCTTAACAGCACAATTTTTGAGTTGATGAGGGTGTCTAGAGAGGGTGTTATCATATTTGCTGGTAAACCCCTTATTTTAGTTTCGTTTTATAGATATCCAAAACACTTGGAAGTGAGAGTTCATTATAACATAATTTCCTTTTCTTTTAATCTCAAACTATACTATCCTTATCATTTTTCCTTTCTTTCAATGTTATGCAGGTCATCCGGATTATCCAGTTTCAGAATTTACCAGATACAAATTTGACCATGAGGTTAGAATTATGGAACTTGATGAGTGTGTTTGGAATACATCCGTAATTTATAAATGAGTACATTTATTTGTTCCTCTTATATTCTATTAGGTTCTCAAGTACAAGTATATAACACCAAACACAAAGATAAAACTGGATTGCACTATCAAAAGAAATTACAATATAACAATAGCCCTTGAAGAGGGCTATATCTCTCCAACAATCTACTAAAAGTAGATAATTTCAAATTACGACCTCCCCTCATGAACTCTAACTTTCTCTATTTACAACCAAGACCGCTAGCTAATGACCAATATATACCTTACCAATATCCTCCTAATATTTCCGATGTATCTCCCAATAATACTCTCATAGATCATAGATAGTCAGGAAACAATCCGGCGGTGTTCTATCACTGAATATCACAGTTTGTTCACTTATATTGTTGCATATTCTGAAACAAGATGGGATGACAAAGAAACTAAATAGAGAATGTAGAATTATATACTGCTTTTTGGGAGGCAATGTTTGCCTTTTCTAGAGTAACTTTTAAGCTTATGCCTAATATTTGATAATCAATCATTCAAACTATCCTCAAGTTAGGCAATTCTAATAAAAAATTACTAATTTACATGCATTGGAATTTAACCTACTGATTAGCAATGACCCATTTGGCTTTTGCTTTTGTTTGTGGATTTTGCAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAAGTCAAAAGAATTTGGAAGAGAATGAAGCTGCTAGAAAGAGGTTTAAAAAAATTTTAAGGGAAATTTCATATAAACCAGCATGCCAAGTCTTTTTTCTCAAGTCAGGATGA

mRNA sequence

ATGGCAGGTCATACCTTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATACCATGACCAAAGTGTTATATGTTGGCCCTGATACTTGTTCGATGATTTCCAAATTACTCATAGTCGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGACTCTGATTCTAGTTACTTCCATTGCTGGGATCTCATCCATAAAGGCATCATCCGTGTTGCCGATGTTAAGTTTGATCTGCCTTATGAGAAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATACTTCTCTTCACGATACCTTAACAGCACAATTTTTGAGTTGATGAGGGTGTCTAGAGAGGGTGTTATCATATTTGCTGGTCATCCGGATTATCCAGTTTCAGAATTTACCAGATACAAATTTGACCATGAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAAGTCAAAAGAATTTGGAAGAGAATGAAGCTGCTAGAAAGAGGTTTAAAAAAATTTTAAGGGAAATTTCATATAAACCAGCATGCCAAGTCTTTTTTCTCAAGTCAGGATGA

Coding sequence (CDS)

ATGGCAGGTCATACCTTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATACCATGACCAAAGTGTTATATGTTGGCCCTGATACTTGTTCGATGATTTCCAAATTACTCATAGTCGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGACTCTGATTCTAGTTACTTCCATTGCTGGGATCTCATCCATAAAGGCATCATCCGTGTTGCCGATGTTAAGTTTGATCTGCCTTATGAGAAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATACTTCTCTTCACGATACCTTAACAGCACAATTTTTGAGTTGATGAGGGTGTCTAGAGAGGGTGTTATCATATTTGCTGGTCATCCGGATTATCCAGTTTCAGAATTTACCAGATACAAATTTGACCATGAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAAGTCAAAAGAATTTGGAAGAGAATGAAGCTGCTAGAAAGAGGTTTAAAAAAATTTTAAGGGAAATTTCATATAAACCAGCATGCCAAGTCTTTTTTCTCAAGTCAGGATGA

Homology

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BLAST of CSPI04G11610 vs. Swiss-Prot
Match: Y3972_ARATH (Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-52
Identity = 101/195 (51.79%), Postives = 135/195 (69.23%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL   E++ EAWGVEPYD
Sbjct: 66  VTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLL--KEEETEAWGVEPYD 125

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            + +  HC   + KG++RVAD+KF LPY   SFS VI+SD L+Y S +YLN T+ EL RV
Sbjct: 126 IEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARV 185

Query: 121 SREGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKIL 180
           + +GV++FAG P    ++     KF   AK+RS SWW R+  Q NLEEN+A  K+F++ +
Sbjct: 186 ASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDAPSKKFEQAV 245

Query: 181 REISYKPACQVFFLK 195
            +  YKPACQVF LK
Sbjct: 246 SKGLYKPACQVFHLK 258

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BLAST of CSPI04G11610 vs. TrEMBL
Match: A0A0A0L156_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179070 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.0e-70
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD
Sbjct: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            DSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV
Sbjct: 61  FDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120

Query: 121 SREGVIIFAGHPDYPVSEFTRY 143
           SREGVIIFAG P   VS F RY
Sbjct: 121 SREGVIIFAGKPLILVS-FYRY 141

[Close]

BLAST of CSPI04G11610 vs. TrEMBL
Match: M4F9R7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.4e-55
Identity = 108/193 (55.96%), Postives = 139/193 (72.02%), Query Frame = 1


Query: 3   GHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYDSD 62
           G   CTSEVQ  IPLL+  Y D+M KVL+VGP+TCS++S LL   E++ EAWGVEPYD +
Sbjct: 55  GDYSCTSEVQRAIPLLKNAYGDSMRKVLHVGPETCSVVSTLL--KEEETEAWGVEPYDVE 114

Query: 63  SSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 122
            +  HC  L+HKG++RVAD+KF LPY   SFS VI+SD L+Y S +YLN T+ EL RV+ 
Sbjct: 115 DADSHCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPKYLNKTVPELARVAS 174

Query: 123 EGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKILRE 182
           +G+++FAG+P    ++     KF   AK+RS SWW R+ SQ NLEENEAA K+F+K   +
Sbjct: 175 DGLLLFAGNPGKQKAKVAELSKFGRPAKMRSSSWWNRFFSQTNLEENEAASKKFEKAASK 234

Query: 183 ISYKPACQVFFLK 195
           ISY PACQVF LK
Sbjct: 235 ISYTPACQVFHLK 245

[Close]

BLAST of CSPI04G11610 vs. TrEMBL
Match: A0A078CWZ5_BRANA (BnaC09g07080D protein OS=Brassica napus GN=BnaC09g07080D PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.2e-55
Identity = 108/195 (55.38%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           + G   CTSEVQ  IPLL+  Y D+M KVL+VGP+TCS++S LL   E++ EAWGVEPYD
Sbjct: 66  ITGDYSCTSEVQRAIPLLKIAYGDSMRKVLHVGPETCSVVSTLL--KEEETEAWGVEPYD 125

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            + +  HC  L+HKG++RVAD+KF LPY   SFS VI+SD L+Y S +YLN T+ EL RV
Sbjct: 126 VEDADSHCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPKYLNKTVPELARV 185

Query: 121 SREGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKIL 180
           + +G+++FAG+P    ++     KF   AK+RS SWW R+ SQ NLEENEAA K+F+K  
Sbjct: 186 ASDGLLLFAGNPGKQKAKVAELSKFGRPAKMRSSSWWNRFFSQTNLEENEAASKKFEKAA 245

Query: 181 REISYKPACQVFFLK 195
            +ISY PACQVF LK
Sbjct: 246 SKISYTPACQVFHLK 258

[Close]

BLAST of CSPI04G11610 vs. TrEMBL
Match: A0A0D3E2E4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 107/192 (55.73%), Postives = 140/192 (72.92%), Query Frame = 1


Query: 4   HTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYDSDS 63
           ++ CTSEVQ  IPLL+  Y D+M KVL+VGP+TCS++S LL   E++ EAWGVEPYD + 
Sbjct: 97  YSSCTSEVQRAIPLLKIAYGDSMRKVLHVGPETCSVVSTLL--KEEETEAWGVEPYDVED 156

Query: 64  SYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSRE 123
           +  HC  L+HKG++RVAD+KF LPY   SFS VI+SD L+Y S +YLN T+ EL RV+ +
Sbjct: 157 ADSHCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPKYLNKTVPELARVASD 216

Query: 124 GVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKILREI 183
           G+++FAG+P    ++     KF   AK+RS SWW R+ SQ NLEENEAA K+F+K   +I
Sbjct: 217 GLLLFAGNPGKQKAKVAELSKFGRPAKMRSSSWWNRFFSQTNLEENEAASKKFEKAASKI 276

Query: 184 SYKPACQVFFLK 195
           SY PACQVF LK
Sbjct: 277 SYTPACQVFHLK 286

[Close]

BLAST of CSPI04G11610 vs. TrEMBL
Match: R0GTR2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027782mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.5e-54
Identity = 106/195 (54.36%), Postives = 142/195 (72.82%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           ++G   CTSEVQ  IP+L+  Y D+M KVL+VGP+TCS++S LL  ++++ EAWGVEPYD
Sbjct: 64  ISGDYSCTSEVQRAIPVLKSAYGDSMRKVLHVGPETCSVVSSLL--NQEETEAWGVEPYD 123

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            + +  +C  L+HKG++RVAD+KF LPY   SFS VI+SD L+Y S RYLN T+ EL RV
Sbjct: 124 VEDADSNCKSLLHKGLVRVADIKFSLPYRSKSFSLVIVSDALDYLSPRYLNKTVPELARV 183

Query: 121 SREGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKIL 180
           + +GV++FAG+P    ++     KF   AK+RS SWW R+ SQ NLEENEAA K+F++  
Sbjct: 184 ASDGVVLFAGNPGQQKAKGAEMSKFGRPAKMRSSSWWIRFFSQTNLEENEAANKKFEQAA 243

Query: 181 REISYKPACQVFFLK 195
            + SYKPACQVF LK
Sbjct: 244 TKSSYKPACQVFHLK 256

[Close]

BLAST of CSPI04G11610 vs. TAIR10
Match: AT5G65810.1 (AT5G65810.1 unknown protein)

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-56
Identity = 105/195 (53.85%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           + G   CT+EVQ  IP+L+  Y D+M KVL+VGP+TCS++S LL  +E++ EAWGVEPYD
Sbjct: 63  ITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLL--NEEETEAWGVEPYD 122

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            + +  +C  L+HKG++RVAD+KF LPY   SFS VI+SD L+Y S RYLN T+ EL RV
Sbjct: 123 VEDADSNCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPRYLNKTVPELARV 182

Query: 121 SREGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKIL 180
           + +GV++ AG+P    ++     KF   AK+RS SWW R+ SQ NLEENEAA K+F++  
Sbjct: 183 ASDGVVLLAGNPGQQKAKGGELSKFGRPAKMRSSSWWIRFFSQTNLEENEAASKKFEQAA 242

Query: 181 REISYKPACQVFFLK 195
            + SYKPACQVF LK
Sbjct: 243 SKSSYKPACQVFHLK 255

[Close]

BLAST of CSPI04G11610 vs. TAIR10
Match: AT3G49720.1 (AT3G49720.1 unknown protein)

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-54
Identity = 101/195 (51.79%), Postives = 135/195 (69.23%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL   E++ EAWGVEPYD
Sbjct: 66  VTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLL--KEEETEAWGVEPYD 125

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            + +  HC   + KG++RVAD+KF LPY   SFS VI+SD L+Y S +YLN T+ EL RV
Sbjct: 126 IEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARV 185

Query: 121 SREGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKIL 180
           + +GV++FAG P    ++     KF   AK+RS SWW R+  Q NLEEN+A  K+F++ +
Sbjct: 186 ASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDAPSKKFEQAV 245

Query: 181 REISYKPACQVFFLK 195
            +  YKPACQVF LK
Sbjct: 246 SKGLYKPACQVFHLK 258

[Close]

BLAST of CSPI04G11610 vs. NCBI nr
Match: gi|778697583|ref|XP_011654354.1| (PREDICTED: uncharacterized protein At3g49720-like [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 3.2e-109
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 1


Query: 3   GHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYDSD 62
           GHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD D
Sbjct: 81  GHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYDFD 140

Query: 63  SSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 122
           SSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSR
Sbjct: 141 SSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 200

Query: 123 EGVIIFAGHPDYPVSEFTRYKFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKILREI 182
           EGVIIFAGHPDYPVSEFTRYKFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKILREI
Sbjct: 201 EGVIIFAGHPDYPVSEFTRYKFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKILREI 260

Query: 183 SYKPACQVFFLKSG 197
           SYKPACQVFFLKSG
Sbjct: 261 SYKPACQVFFLKSG 274

[Close]

BLAST of CSPI04G11610 vs. NCBI nr
Match: gi|659109011|ref|XP_008454502.1| (PREDICTED: uncharacterized protein At3g49720-like [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 6.1e-100
Identity = 176/194 (90.72%), Postives = 187/194 (96.39%), Query Frame = 1


Query: 3   GHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYDSD 62
           GHTFCTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSMISKLLI DEDDYEAWG+EPY SD
Sbjct: 81  GHTFCTSEVQTTIPLLREVYDDSMTKVLYVGPDTCSMISKLLIDDEDDYEAWGLEPYGSD 140

Query: 63  SSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 122
           SSYF+CWDLIHKGIIRVADVKF LPY +NSFSHVIISDTLEYFSSRYLNSTIFELMRVSR
Sbjct: 141 SSYFNCWDLIHKGIIRVADVKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSR 200

Query: 123 EGVIIFAGHPDYPVSEFTRYKFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKILREI 182
           EGVIIFAG+PDYP+SEFTR+KFD +AKLRSPSWWKRYL+QK LEENE ARKRFKKILREI
Sbjct: 201 EGVIIFAGYPDYPISEFTRFKFDRQAKLRSPSWWKRYLNQKELEENEVARKRFKKILREI 260

Query: 183 SYKPACQVFFLKSG 197
           SYKPACQ++FLKSG
Sbjct: 261 SYKPACQIYFLKSG 274

[Close]

BLAST of CSPI04G11610 vs. NCBI nr
Match: gi|700198713|gb|KGN53871.1| (hypothetical protein Csa_4G179070 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.9e-70
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD
Sbjct: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            DSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV
Sbjct: 61  FDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120

Query: 121 SREGVIIFAGHPDYPVSEFTRY 143
           SREGVIIFAG P   VS F RY
Sbjct: 121 SREGVIIFAGKPLILVS-FYRY 141

[Close]

BLAST of CSPI04G11610 vs. NCBI nr
Match: gi|685354128|ref|XP_009112201.1| (PREDICTED: uncharacterized protein At3g49720-like [Brassica rapa])

HSP 1 Score: 222.6 bits (566), Expect = 5.9e-55
Identity = 108/195 (55.38%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           + G   CTSEVQ  IPLL+  Y D+M KVL+VGP+TCS++S LL   E++ EAWGVEPYD
Sbjct: 66  VTGDYSCTSEVQRAIPLLKNAYGDSMRKVLHVGPETCSVVSTLL--KEEETEAWGVEPYD 125

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            + +  HC  L+HKG++RVAD+KF LPY   SFS VI+SD L+Y S +YLN T+ EL RV
Sbjct: 126 VEDADSHCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPKYLNKTVPELARV 185

Query: 121 SREGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKIL 180
           + +G+++FAG+P    ++     KF   AK+RS SWW R+ SQ NLEENEAA K+F+K  
Sbjct: 186 ASDGLLLFAGNPGKQKAKVAELSKFGRPAKMRSSSWWNRFFSQTNLEENEAASKKFEKAA 245

Query: 181 REISYKPACQVFFLK 195
            +ISY PACQVF LK
Sbjct: 246 SKISYTPACQVFHLK 258

[Close]

BLAST of CSPI04G11610 vs. NCBI nr
Match: gi|923880073|ref|XP_013712399.1| (PREDICTED: uncharacterized protein At3g49720-like [Brassica napus])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54
Identity = 108/195 (55.38%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 1   MAGHTFCTSEVQTTIPLLREVYDDTMTKVLYVGPDTCSMISKLLIVDEDDYEAWGVEPYD 60
           + G   CTSEVQ  IPLL+  Y D+M KVL+VGP+TCS++S LL   E++ EAWGVEPYD
Sbjct: 66  ITGDYSCTSEVQRAIPLLKIAYGDSMRKVLHVGPETCSVVSTLL--KEEETEAWGVEPYD 125

Query: 61  SDSSYFHCWDLIHKGIIRVADVKFDLPYEKNSFSHVIISDTLEYFSSRYLNSTIFELMRV 120
            + +  HC  L+HKG++RVAD+KF LPY   SFS VI+SD L+Y S +YLN T+ EL RV
Sbjct: 126 VEDADSHCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPKYLNKTVPELARV 185

Query: 121 SREGVIIFAGHPDYPVSEFTRY-KFDHEAKLRSPSWWKRYLSQKNLEENEAARKRFKKIL 180
           + +G+++FAG+P    ++     KF   AK+RS SWW R+ SQ NLEENEAA K+F+K  
Sbjct: 186 ASDGLLLFAGNPGKQKAKVAELSKFGRPAKMRSSSWWNRFFSQTNLEENEAASKKFEKAA 245

Query: 181 REISYKPACQVFFLK 195
            +ISY PACQVF LK
Sbjct: 246 SKISYTPACQVFHLK 258

The following BLAST results are available for this feature:

BLAST of CSPI04G11610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3972_ARATH	1.6e-52	51.79	Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=2 SV=1	[more]

BLAST of CSPI04G11610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L156_CUCSA	2.0e-70	95.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179070 PE=4 SV=1	[more]
M4F9R7_BRARP	5.4e-55	55.96	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078CWZ5_BRANA	9.2e-55	55.38	BnaC09g07080D protein OS=Brassica napus GN=BnaC09g07080D PE=4 SV=1	[more]
A0A0D3E2E4_BRAOL	1.6e-54	55.73	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
R0GTR2_9BRAS	3.5e-54	54.36	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027782mg PE=4 SV=1	[more]

BLAST of CSPI04G11610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65810.1	2.6e-56	53.85	unknown protein	[more]
AT3G49720.1	9.1e-54	51.79	unknown protein	[more]

BLAST of CSPI04G11610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697583\|ref\|XP_011654354.1\|	3.2e-109	99.48	PREDICTED: uncharacterized protein At3g49720-like [Cucumis sativus]	[more]
gi\|659109011\|ref\|XP_008454502.1\|	6.1e-100	90.72	PREDICTED: uncharacterized protein At3g49720-like [Cucumis melo]	[more]
gi\|700198713\|gb\|KGN53871.1\|	2.9e-70	95.07	hypothetical protein Csa_4G179070 [Cucumis sativus]	[more]
gi\|685354128\|ref\|XP_009112201.1\|	5.9e-55	55.38	PREDICTED: uncharacterized protein At3g49720-like [Brassica rapa]	[more]
gi\|923880073\|ref\|XP_013712399.1\|	1.3e-54	55.38	PREDICTED: uncharacterized protein At3g49720-like [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010393	galacturonan metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0044431	Golgi apparatus part
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G11610.1	CSPI04G11610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34208	FAMILY NOT NAMED	coord: 1..195 score: 2.3
None	No IPR available	PANTHER	PTHR34208:SF1	SUBFAMILY NOT NAMED	coord: 1..195 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G11610	Cla006473	Watermelon (97103) v1	cpiwmB298
CSPI04G11610	Csa4G179070	Cucumber (Chinese Long) v2	cpicuB184
CSPI04G11610	MELO3C018036	Melon (DHL92) v3.5.1	cpimeB296
CSPI04G11610	ClCG10G009870	Watermelon (Charleston Gray)	cpiwcgB286
CSPI04G11610	MELO3C018548.2	Melon (DHL92) v3.6.1	cpimedB267
CSPI04G11610	MELO3C018036.2	Melon (DHL92) v3.6.1	cpimedB290
CSPI04G11610	CsaV3_4G014570	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G11610	Cla97C10G192890	Watermelon (97103) v2	cpiwmbB284
CSPI04G11610	Bhi11G000892	Wax gourd	cpiwgoB361
CSPI04G11610	Bhi05G000839	Wax gourd	cpiwgoB387
CSPI04G11610	Cucsa.332040	Cucumber (Gy14) v1	cgycpiB495
CSPI04G11610	CmaCh04G004190	Cucurbita maxima (Rimu)	cmacpiB724
CSPI04G11610	CmoCh04G004510	Cucurbita moschata (Rifu)	cmocpiB716
CSPI04G11610	CmoCh19G005310	Cucurbita moschata (Rifu)	cmocpiB515
CSPI04G11610	Cp4.1LG01g02980	Cucurbita pepo (Zucchini)	cpecpiB407
CSPI04G11610	CsGy4G011100	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G11610	Carg08095	Silver-seed gourd	carcpiB0410

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G11610	Silver-seed gourd	carcpiB0327
CSPI04G11610	Cucumber (Chinese Long) v3	cpicucB252
CSPI04G11610	Cucumber (Gy14) v1	cgycpiB335
CSPI04G11610	Cucurbita maxima (Rimu)	cmacpiB343
CSPI04G11610	Cucurbita moschata (Rifu)	cmocpiB334
CSPI04G11610	Cucurbita pepo (Zucchini)	cpecpiB225
CSPI04G11610	Bottle gourd (USVL1VR-Ls)	cpilsiB279