CSPI04G01480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G01480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 829480 .. 831635 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAAACAAATATTTATTCATTGTATTTTAAAAGGAGTTTGTTGTACAGTCCTGGAACCCCCCACTCCTGGTGTTACACCAGAACGAGTAAAAACTTTGGTCTATTGGGTAAGAAGTGTTAAAAGAAACGGCTAGTATATTAGCACAAAACTATGGCAAGTCAAGAAAACATAAAGTTGCTCTGGCCTTATGAGAAACCGAATCATAAATAAATTACAAAAAGCCCGTACTTGGATGATTGGTGCAATTTAATCTTTCTTCAGTCACTTTCATGCTCTGTCTCTTCATTTTTTAACATCGACTGAGCCTCGCGACGTTTTCCACCACTCATCAGGTTGGCAAGCTCTTGTATGGAGCAAGAAGTGCTTCGTTTCATCTTGTCACCAAGTATCGCAACCTGATCCTTGAACCCTATCCCCAGAAGTCGGTCCCTCAACAACTCAACAGTAGCGATATATGGAGGTATTCCCTCATCAATCATCATTTCAAAGTACTTACATGCTTCTTCTAACTTCCATTTTTTCTTGCAGAAACCATGAATCATGACAGCATAAGTTGAAACAGAAGGGTAAAATCCTCTCTTTCCCATACTCTCCCACACTTCATTGGCTCTGTCAAATCTTCCCACCCTTACTAGCAATTTCAGAACCATATTGTAAGTATGTTTATCTGGAACACATTTGTCCCTATCCATTCTCTTTACCAAGTTAAGAGCACTATTGACCTCGCTATGATCACAATGATAAGCTTGGATTGCATTGTAGGACCATGTATCTGGAGTAACTCCTCTTTCAATCATTTCGTCCAAAATTTGGTAAGCTTCTTCCACGTTTTGATCTTTACAAAGCTTCTTGATAACACAATTATAAGTAAACACATTAGGAAGAAGGTTTTTCCTCTTCGTTCTTTCTAAGACCCTATAAACCGTATGCAAATCATTTTCTTGACAACTTGAGCGGATGAAAATTGAATACGTATCAGCATCTGGGTCAACTCCATTTGAATCCATCTCCAGAAACATCTTGTACGCTTCATCCCTTTTCCCACCTTTGCACAGAGCTTCCAAGAGACTATTGTAAGCAAGCACATCAATCAAACAACCTCGTTCCCGCATTTCATCAAACACCTTCTGGGCATTGTTTGAATCACCCACAACGCCCCAACCCCTAGTCAAAATGCTGTAAGTTTTCACACTCGGATTAAACACACTCTTAACTTTATCAAAAAACTGTTGAGCATGAGCCACATGTTTCCTCTTGCATAGAGTATACAAGAGCTTATCAAGATCATCAACACCAGCCCTAATCCCAAACTCCCCCATTCGATTGAAAGCTCGAATGGCATCTTGAGGCAAATCAGCCCTGCTATAAGCTGTGAAAACATGCCAGAAAAGTTCATGGGTAATCACAGAGGACCGAGTCTCCCTTATTTCTATAAGAAAATCCCACAAAATAGCGAATTGTCCACTGCTTCCCAAGATGTCAACGACAATATGATAGCTGTCGTCGCTGGGTTCAAAACCCGGAATTCGTTTAGCCCAGAGGAAGAACCTGTGAGCGGAGAAAGCAATATTCTTGCACCTTTTGAGAACCTGCTCGACGAGGTCAGTGGATACATTGGAGGAGAAGGAGGAGAGGCCGACTTCCAAGTCATGGTGAGGATTTCTACGGTCGCTGAGGATGCGAGATATCTCACTGACGAGAAATGGAAGTGTTGGGTCTGATCCTGCACGTGCTTCTGTAGCGAAAGAAGTGAATGAGCGTTGGTGAGCGAAACGATTGGTTCTTAAGAGAGAGGAGAAGAGTGAAATAGAGATGCGGAATTTGGAGGAACAGGCTCTAATGGCCATTACAGAGATTGGTTACAAAGAACAGTGGTCAACATTCTTCTTGAAATTTGGAATTTGAAGGAGAAGGCTCTTCGAATGAGTGAAAGAGAGTGCGAGAGCATGTTCTGGGTGTCTCCTAGGAAGAAGTAAAATAACCATTGATCAAAATCAAGACGTAAGTCGTGTTCTTGAGAAAAATAGCTATAGCTTCCAAATTACAAACTGGAAAACGGAGAAGCGGCTACCGATTCAATAATGAAGAAGTGGCTTTTGACAAATTGAAACACACCCAGATGAGAAATCCGGTGAAAGTATGAACCAACAGGAGG

mRNA sequence

ATGCCAGAAAAGTTCATGGGTAATCACAGAGGACCGAGTCTCCCTTATTTCTATAAGAAAATCCCACAAAATAGCGAATTGTCCACTGCTTCCCAAGATGTCAACGACAATATGATAGCTGTCGTCGCTGGGTTCAAAACCCGGAATTCGTTTAGCCCAGAGGAAGAACCTGTGAGCGGAGAAAGCAATATTCTTGCACCTTTTGAGAACCTGCTCGACGAGGTCAGTGGATACATTGGAGGAGAAGGAGGAGAGGCCGACTTCCAAGTCATGGTGAGGATTTCTACGGTCGCTGAGGATGCGAGATATCTCACTGACGAGAAATGGAAGTGTTGGGTCTGA

Coding sequence (CDS)

ATGCCAGAAAAGTTCATGGGTAATCACAGAGGACCGAGTCTCCCTTATTTCTATAAGAAAATCCCACAAAATAGCGAATTGTCCACTGCTTCCCAAGATGTCAACGACAATATGATAGCTGTCGTCGCTGGGTTCAAAACCCGGAATTCGTTTAGCCCAGAGGAAGAACCTGTGAGCGGAGAAAGCAATATTCTTGCACCTTTTGAGAACCTGCTCGACGAGGTCAGTGGATACATTGGAGGAGAAGGAGGAGAGGCCGACTTCCAAGTCATGGTGAGGATTTCTACGGTCGCTGAGGATGCGAGATATCTCACTGACGAGAAATGGAAGTGTTGGGTCTGA
Homology
[Close]
BLAST of CSPI04G01480 vs. TrEMBL
Match: A0A0A0KWS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004915 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-59
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MPEKFMGNHRGPSLPYFYKKIPQNSELSTASQDVNDNMIAVVAGFKTRNSFSPEEEPVSG 60
           MPEKFMGNHRGPSLPYFYKKIPQNSELSTASQDVNDNMIAVVAGFKTRNSFSPEEEPVSG
Sbjct: 1   MPEKFMGNHRGPSLPYFYKKIPQNSELSTASQDVNDNMIAVVAGFKTRNSFSPEEEPVSG 60

Query: 61  ESNILAPFENLLDEVSGYIGGEGGEADFQVMVRISTVAEDARYLTDEKWKCWV 114
           ESNILAPFENLLDEVSGYIGGEGGEADFQVMVRISTVAEDARYLTDEKWKCWV
Sbjct: 61  ESNILAPFENLLDEVSGYIGGEGGEADFQVMVRISTVAEDARYLTDEKWKCWV 113

[Close]
BLAST of CSPI04G01480 vs. NCBI nr
Match: gi|700197724|gb|KGN52882.1| (hypothetical protein Csa_4G004915 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 2.3e-59
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MPEKFMGNHRGPSLPYFYKKIPQNSELSTASQDVNDNMIAVVAGFKTRNSFSPEEEPVSG 60
           MPEKFMGNHRGPSLPYFYKKIPQNSELSTASQDVNDNMIAVVAGFKTRNSFSPEEEPVSG
Sbjct: 1   MPEKFMGNHRGPSLPYFYKKIPQNSELSTASQDVNDNMIAVVAGFKTRNSFSPEEEPVSG 60

Query: 61  ESNILAPFENLLDEVSGYIGGEGGEADFQVMVRISTVAEDARYLTDEKWKCWV 114
           ESNILAPFENLLDEVSGYIGGEGGEADFQVMVRISTVAEDARYLTDEKWKCWV
Sbjct: 61  ESNILAPFENLLDEVSGYIGGEGGEADFQVMVRISTVAEDARYLTDEKWKCWV 113

The following BLAST results are available for this feature:
BLAST of CSPI04G01480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G01480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWS3_CUCSA1.6e-59100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004915 PE=4 SV=1[more]
BLAST of CSPI04G01480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G01480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197724|gb|KGN52882.1|2.3e-59100.00hypothetical protein Csa_4G004915 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G01480.1CSPI04G01480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G01480MELO3C017892Melon (DHL92) v3.5.1cpimeB310
CSPI04G01480MELO3C017892.2Melon (DHL92) v3.6.1cpimedB301
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G01480Cucumber (Chinese Long) v3cpicucB205
CSPI04G01480Cucumber (Chinese Long) v3cpicucB213
CSPI04G01480Cucumber (Chinese Long) v3cpicucB249
CSPI04G01480Watermelon (97103) v2cpiwmbB323
CSPI04G01480Watermelon (97103) v2cpiwmbB333
CSPI04G01480Watermelon (97103) v2cpiwmbB340
CSPI04G01480Watermelon (97103) v2cpiwmbB344
CSPI04G01480Wax gourdcpiwgoB380
CSPI04G01480Wax gourdcpiwgoB425
CSPI04G01480Wax gourdcpiwgoB432
CSPI04G01480Wild cucumber (PI 183967)cpicpiB072
CSPI04G01480Cucurbita moschata (Rifu)cmocpiB250
CSPI04G01480Wild cucumber (PI 183967)cpicpiB172
CSPI04G01480Cucumber (Gy14) v1cgycpiB103
CSPI04G01480Cucumber (Gy14) v1cgycpiB125
CSPI04G01480Cucumber (Gy14) v1cgycpiB245
CSPI04G01480Cucurbita maxima (Rimu)cmacpiB263
CSPI04G01480Cucurbita maxima (Rimu)cmacpiB470
CSPI04G01480Cucurbita moschata (Rifu)cmocpiB460
CSPI04G01480Cucumber (Chinese Long) v2cpicuB174
CSPI04G01480Cucumber (Chinese Long) v2cpicuB182
CSPI04G01480Cucumber (Chinese Long) v2cpicuB210
CSPI04G01480Melon (DHL92) v3.5.1cpimeB273
CSPI04G01480Melon (DHL92) v3.5.1cpimeB284
CSPI04G01480Watermelon (Charleston Gray)cpiwcgB291
CSPI04G01480Watermelon (Charleston Gray)cpiwcgB275
CSPI04G01480Watermelon (Charleston Gray)cpiwcgB333
CSPI04G01480Watermelon (Charleston Gray)cpiwcgB343
CSPI04G01480Watermelon (Charleston Gray)cpiwcgB351
CSPI04G01480Watermelon (97103) v1cpiwmB286
CSPI04G01480Watermelon (97103) v1cpiwmB301
CSPI04G01480Watermelon (97103) v1cpiwmB307
CSPI04G01480Cucurbita pepo (Zucchini)cpecpiB576
CSPI04G01480Cucurbita pepo (Zucchini)cpecpiB617
CSPI04G01480Bottle gourd (USVL1VR-Ls)cpilsiB268
CSPI04G01480Bottle gourd (USVL1VR-Ls)cpilsiB300
CSPI04G01480Bottle gourd (USVL1VR-Ls)cpilsiB311
CSPI04G01480Bottle gourd (USVL1VR-Ls)cpilsiB317
CSPI04G01480Melon (DHL92) v3.6.1cpimedB271
CSPI04G01480Melon (DHL92) v3.6.1cpimedB279
CSPI04G01480Cucumber (Gy14) v2cgybcpiB168
CSPI04G01480Cucumber (Gy14) v2cgybcpiB325
CSPI04G01480Silver-seed gourdcarcpiB0133
CSPI04G01480Silver-seed gourdcarcpiB0233