CSPI03G42050 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G42050
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	PAP-specific phosphatase HAL2-like
Location	Chr3 : 36093843 .. 36094259 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGGAGAGCACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGGCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGACGATGATTCTCCGGTGACAATTGCCGGTATTCTTTCTTTGTTTTTGTTGTTTTATCGATGTTCCTTTTCTTATTGTCTGTTGAATGCGTTTTCTTTTAACTTTGAAGTGGGAACTGCATGTTATATGCTTGTGTTTGTTTGGCTTATGGAAAATGTGAGAAAATGAATATATGTAATGTATTTGATACTTTGTTGAGATCAAGAAGACACCATAAAGTCTAACGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATTATTCTCTGTTTTTGTAATTTAGTTTCCTGA

mRNA sequence

ATGGAGGATGGAGAGCACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGGCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGACGATGATTCTCCGGTGACAATTGCCGATCAAGAAGACACCATAAAGTCTAACGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATTATTCTCTGTTTTTGTAATTTAGTTTCCTGA

Coding sequence (CDS)

ATGGAGGATGGAGAGCACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGGCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGACGATGATTCTCCGGTGACAATTGCCGATCAAGAAGACACCATAAAGTCTAACGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATTATTCTCTGTTTTTGTAATTTAGTTTCCTGA

Homology

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BLAST of CSPI03G42050 vs. Swiss-Prot
Match: DPNPH_ARATH (PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana GN=AHL PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1


Query: 9  ELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          E+D AVRVVHLA +LC +VQE L       VK+KDDDSPVT+AD
Sbjct: 9  EIDTAVRVVHLASSLCVKVQEKLHLPNGGHVKSKDDDSPVTVAD 52

[Close]

BLAST of CSPI03G42050 vs. TrEMBL
Match: A0A0A0LDM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851880 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.0e-37
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTIKSN 60
          MEDGE+SKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTIKSN
Sbjct: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTIKSN 60

Query: 61 AVIVGYRLFSSIILCFCNLVS 82
          AVIVGYRLFSSIILCFCNLVS
Sbjct: 61 AVIVGYRLFSSIILCFCNLVS 81

[Close]

BLAST of CSPI03G42050 vs. TrEMBL
Match: A0A0S3S999_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G038000 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-11
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          ME+ +++KEL++AVRVVH+ACALC RVQE LLE  N  V +KDDDSPVT+AD
Sbjct: 1  MEEDKYAKELEVAVRVVHVACALCGRVQERLLETSNDHVVSKDDDSPVTVAD 52

[Close]

BLAST of CSPI03G42050 vs. TrEMBL
Match: A0A0L9V3N6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g033900 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.6e-11
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          ME+ +++KEL++AVRVVH+ACALC RVQE LLE  N  V +KDDDSPVT+A+
Sbjct: 1  MEEDKYAKELEVAVRVVHVACALCGRVQERLLETSNDHVVSKDDDSPVTVAE 52

[Close]

BLAST of CSPI03G42050 vs. TrEMBL
Match: I1KE06_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G249500 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.9e-11
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          ME+ +++KEL++AVRVVH+ACALC RVQE LL   N  V AKDDDSPVT+AD
Sbjct: 1  MEEDKYAKELEVAVRVVHVACALCGRVQERLLATTNDHVLAKDDDSPVTVAD 52

[Close]

BLAST of CSPI03G42050 vs. TrEMBL
Match: V4ULT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008644mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 33/53 (62.26%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENG-NAQVKAKDDDSPVTIAD 53
          ME+G+++KELD+AVRVVH+AC+LC+RVQ+ L+ +  +  VK+KDDDSPVT+AD
Sbjct: 1  MEEGKYAKELDVAVRVVHMACSLCQRVQQKLVSSSDDGHVKSKDDDSPVTVAD 53

[Close]

BLAST of CSPI03G42050 vs. TAIR10
Match: AT5G54390.1 (AT5G54390.1 HAL2-like)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1


Query: 9  ELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          E+D AVRVVHLA +LC +VQE L       VK+KDDDSPVT+AD
Sbjct: 9  EIDTAVRVVHLASSLCVKVQEKLHLPNGGHVKSKDDDSPVTVAD 52

[Close]

BLAST of CSPI03G42050 vs. NCBI nr
Match: gi|700204755|gb|KGN59888.1| (hypothetical protein Csa_3G851880 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTIKSN 60
          MEDGE+SKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTIKSN
Sbjct: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTIKSN 60

Query: 61 AVIVGYRLFSSIILCFCNLVS 82
          AVIVGYRLFSSIILCFCNLVS
Sbjct: 61 AVIVGYRLFSSIILCFCNLVS 81

[Close]

BLAST of CSPI03G42050 vs. NCBI nr
Match: gi|449464776|ref|XP_004150105.1| (PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 7.5e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          MEDGE+SKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52

[Close]

BLAST of CSPI03G42050 vs. NCBI nr
Match: gi|659109326|ref|XP_008454658.1| (PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          MEDGE+SKELDIAVRVVHL+CALCRRVQEGLLENGNAQVKAKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52

[Close]

BLAST of CSPI03G42050 vs. NCBI nr
Match: gi|1009110519|ref|XP_015895939.1| (PREDICTED: PAP-specific phosphatase HAL2-like [Ziziphus jujuba])

HSP 1 Score: 81.3 bits (199), Expect = 8.9e-13
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 1   MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
           ME G +SKELD+AVRVVHLAC+LC++VQEGL    + QVK+KDDDSPVT+AD
Sbjct: 69  MEGGRYSKELDVAVRVVHLACSLCQKVQEGLATTNSDQVKSKDDDSPVTVAD 120

[Close]

BLAST of CSPI03G42050 vs. NCBI nr
Match: gi|470116697|ref|XP_004294514.1| (PREDICTED: PAP-specific phosphatase HAL2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 1  MEDGEHSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          MED +++KELD+AVR VH+ACALC+RVQEGL+     QVK+KDDDSPVTIAD
Sbjct: 1  MEDDKYAKELDVAVRAVHMACALCQRVQEGLVSASTDQVKSKDDDSPVTIAD 52

The following BLAST results are available for this feature:

BLAST of CSPI03G42050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPNPH_ARATH	1.9e-07	63.64	PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana GN=AHL PE=2 SV=1	[more]

BLAST of CSPI03G42050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDM4_CUCSA	8.0e-37	98.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851880 PE=4 SV=1	[more]
A0A0S3S999_PHAAN	2.6e-11	67.31	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G038000 PE=...	[more]
A0A0L9V3N6_PHAAN	7.6e-11	65.38	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g033900 PE=4 SV=1	[more]
I1KE06_SOYBN	9.9e-11	67.31	Uncharacterized protein OS=Glycine max GN=GLYMA_06G249500 PE=4 SV=1	[more]
V4ULT7_9ROSI	1.3e-10	62.26	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008644mg PE=4 SV=1	[more]

BLAST of CSPI03G42050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54390.1	1.1e-08	63.64	HAL2-like	[more]

BLAST of CSPI03G42050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204755\|gb\|KGN59888.1\|	1.2e-36	98.77	hypothetical protein Csa_3G851880 [Cucumis sativus]	[more]
gi\|449464776\|ref\|XP_004150105.1\|	7.5e-20	98.08	PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis sativus]	[more]
gi\|659109326\|ref\|XP_008454658.1\|	1.7e-19	96.15	PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo]	[more]
gi\|1009110519\|ref\|XP_015895939.1\|	8.9e-13	71.15	PREDICTED: PAP-specific phosphatase HAL2-like [Ziziphus jujuba]	[more]
gi\|470116697\|ref\|XP_004294514.1\|	1.2e-12	71.15	PREDICTED: PAP-specific phosphatase HAL2-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000760	Inositol_monophosphatase-like

Vocabulary: **Biological Process**
Term	Definition
GO:0046854	phosphatidylinositol phosphorylation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046854	phosphatidylinositol phosphorylation
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0006790	sulfur compound metabolic process
biological_process	GO:0016311	dephosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008441	3'(2'),5'-bisphosphate nucleotidase activity
molecular_function	GO:0004441	inositol-1,4-bisphosphate 1-phosphatase activity
molecular_function	GO:0016773	phosphotransferase activity, alcohol group as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G42050.1	CSPI03G42050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000760	Inositol monophosphatase	PANTHER	PTHR20854	INOSITOL MONOPHOSPHATASE	coord: 1..52 score: 1.7
None	No IPR available	GENE3D	G3DSA:3.30.540.10		coord: 7..54 score: 2.8
None	No IPR available	PANTHER	PTHR20854:SF32	PAP-SPECIFIC PHOSPHATASE HAL2-LIKE	coord: 1..52 score: 1.7
None	No IPR available	unknown	SSF56655	Carbohydrate phosphatase	coord: 7..53 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G42050	Cla023416	Watermelon (97103) v1	cpiwmB275
CSPI03G42050	Csa3G851880	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G42050	MELO3C018212	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G42050	ClCG11G018360	Watermelon (Charleston Gray)	cpiwcgB203
CSPI03G42050	Lsi04G012920	Bottle gourd (USVL1VR-Ls)	cpilsiB191
CSPI03G42050	MELO3C018215.2	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G42050	CsaV3_3G044460	Cucumber (Chinese Long) v3	cpicucB145
CSPI03G42050	Cla97C11G224510	Watermelon (97103) v2	cpiwmbB197
CSPI03G42050	Bhi09G001704	Wax gourd	cpiwgoB344
CSPI03G42050	Cucsa.341700	Cucumber (Gy14) v1	cgycpiB504
CSPI03G42050	CmaCh01G011900	Cucurbita maxima (Rimu)	cmacpiB452
CSPI03G42050	CmaCh09G008890	Cucurbita maxima (Rimu)	cmacpiB018
CSPI03G42050	CmoCh09G008780	Cucurbita moschata (Rifu)	cmocpiB009
CSPI03G42050	CmoCh01G012430	Cucurbita moschata (Rifu)	cmocpiB439
CSPI03G42050	Cp4.1LG06g07140	Cucurbita pepo (Zucchini)	cpecpiB782
CSPI03G42050	Cp4.1LG02g01480	Cucurbita pepo (Zucchini)	cpecpiB562
CSPI03G42050	CsGy3G039470	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G42050	Carg12760	Silver-seed gourd	carcpiB0941
CSPI03G42050	Carg14678	Silver-seed gourd	carcpiB0343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G42050	Wild cucumber (PI 183967)	cpicpiB018
CSPI03G42050	Cucumber (Gy14) v1	cgycpiB174
CSPI03G42050	Watermelon (Charleston Gray)	cpiwcgB223