CSPI03G38830 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G38830
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 33437220 .. 33437488 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCGTTGTTGATTTGTTTTCGAAGCTTACCTAGCGCCGGTGCAGCTTGTTGCCCGGAGAAGAAGAAGAAGAAGTGGGAAACGTCGCAGGAGCCGTTCGTGGGTCACTTGCACTTGTAGATCTGCTGCCGCGAGGAACTGAATCCGCCGGAGTAGGAAGAGCCAGGACGGTCCGGCTCTTTGTGATTGAGTTGGGTCGCCTGAGGATAGCCGGAGATGGTGGATTCGCCGTGAGGTGCTTGGAGCTTGAGGAAAGATGGGATGGA

mRNA sequence

ATGCCGCCGTTGTTGATTTGTTTTCGAAGCTTACCTAGCGCCGGTGCAGCTTGTTGCCCGGAGAAGAAGAAGAAGAAGTGGGAAACGTCGCAGGAGCCGTTCGTGGGAACTGAATCCGCCGGAGTAGGAAGAGCCAGGACGGTCCGGCTCTTTGTGATTGAGTTGGGTCGCCTGAGGATAGCCGGAGATGGTGGATTCGCCGTGAGGTGCTTGGAGCTTGAGGAAAGATGGGATGGA

Coding sequence (CDS)

ATGCCGCCGTTGTTGATTTGTTTTCGAAGCTTACCTAGCGCCGGTGCAGCTTGTTGCCCGGAGAAGAAGAAGAAGAAGTGGGAAACGTCGCAGGAGCCGTTCGTGGGAACTGAATCCGCCGGAGTAGGAAGAGCCAGGACGGTCCGGCTCTTTGTGATTGAGTTGGGTCGCCTGAGGATAGCCGGAGATGGTGGATTCGCCGTGAGGTGCTTGGAGCTTGAGGAAAGATGGGATGGA
Homology
[Close]
BLAST of CSPI03G38830 vs. TrEMBL
Match: A0A0A0LCR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824980 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.0e-34
Identity = 74/79 (93.67%), Postives = 74/79 (93.67%), Query Frame = 1 

Query: 1  MPPLLICFRSLPSAGAACCPEKKKKKWETSQEPFVGTESAGVGRARTVRLFVIELGRLRI 60
          MPP LICFR LPSAGAACCPE KK KWETSQEPFVGTESAGVGRARTVRLFVIELGRLRI
Sbjct: 1  MPPSLICFRRLPSAGAACCPE-KKNKWETSQEPFVGTESAGVGRARTVRLFVIELGRLRI 60

Query: 61 AGDGGFAVRCLELEERWDG 80
          AGDGGFAVR LELEERWDG
Sbjct: 61 AGDGGFAVRSLELEERWDG 78

[Close]
BLAST of CSPI03G38830 vs. NCBI nr
Match: gi|700204420|gb|KGN59553.1| (hypothetical protein Csa_3G824980 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 74/79 (93.67%), Postives = 74/79 (93.67%), Query Frame = 1 

Query: 1  MPPLLICFRSLPSAGAACCPEKKKKKWETSQEPFVGTESAGVGRARTVRLFVIELGRLRI 60
          MPP LICFR LPSAGAACCPE KK KWETSQEPFVGTESAGVGRARTVRLFVIELGRLRI
Sbjct: 1  MPPSLICFRRLPSAGAACCPE-KKNKWETSQEPFVGTESAGVGRARTVRLFVIELGRLRI 60

Query: 61 AGDGGFAVRCLELEERWDG 80
          AGDGGFAVR LELEERWDG
Sbjct: 61 AGDGGFAVRSLELEERWDG 78

The following BLAST results are available for this feature:
BLAST of CSPI03G38830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G38830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCR7_CUCSA8.0e-3493.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824980 PE=4 SV=1[more]
BLAST of CSPI03G38830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G38830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204420|gb|KGN59553.1|1.2e-3393.67hypothetical protein Csa_3G824980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G38830.1CSPI03G38830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G38830Csa3G824980Cucumber (Chinese Long) v2cpicuB120
CSPI03G38830CsaV3_3G041270Cucumber (Chinese Long) v3cpicucB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G38830Watermelon (97103) v2cpiwmbB189
CSPI03G38830Watermelon (97103) v2cpiwmbB262
CSPI03G38830Wax gourdcpiwgoB220
CSPI03G38830Wax gourdcpiwgoB267
CSPI03G38830Wild cucumber (PI 183967)cpicpiB117
CSPI03G38830Cucumber (Gy14) v1cgycpiB235
CSPI03G38830Cucumber (Gy14) v1cgycpiB504
CSPI03G38830Cucurbita maxima (Rimu)cmacpiB122
CSPI03G38830Cucurbita maxima (Rimu)cmacpiB241
CSPI03G38830Cucurbita maxima (Rimu)cmacpiB288
CSPI03G38830Cucurbita maxima (Rimu)cmacpiB711
CSPI03G38830Cucurbita moschata (Rifu)cmocpiB113
CSPI03G38830Cucurbita moschata (Rifu)cmocpiB229
CSPI03G38830Cucurbita moschata (Rifu)cmocpiB279
CSPI03G38830Cucurbita moschata (Rifu)cmocpiB705
CSPI03G38830Cucumber (Chinese Long) v2cpicuB143
CSPI03G38830Melon (DHL92) v3.5.1cpimeB165
CSPI03G38830Melon (DHL92) v3.5.1cpimeB214
CSPI03G38830Watermelon (Charleston Gray)cpiwcgB179
CSPI03G38830Watermelon (Charleston Gray)cpiwcgB195
CSPI03G38830Watermelon (97103) v1cpiwmB185
CSPI03G38830Watermelon (97103) v1cpiwmB198
CSPI03G38830Cucurbita pepo (Zucchini)cpecpiB172
CSPI03G38830Cucurbita pepo (Zucchini)cpecpiB599
CSPI03G38830Cucurbita pepo (Zucchini)cpecpiB673
CSPI03G38830Bottle gourd (USVL1VR-Ls)cpilsiB176
CSPI03G38830Bottle gourd (USVL1VR-Ls)cpilsiB184
CSPI03G38830Melon (DHL92) v3.6.1cpimedB156
CSPI03G38830Melon (DHL92) v3.6.1cpimedB208
CSPI03G38830Cucumber (Gy14) v2cgybcpiB111
CSPI03G38830Cucumber (Gy14) v2cgybcpiB216
CSPI03G38830Silver-seed gourdcarcpiB0292
CSPI03G38830Silver-seed gourdcarcpiB0472
CSPI03G38830Cucumber (Chinese Long) v3cpicucB171