CSPI03G37870 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G37870
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 32801157 .. 32801623 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTCCCTTACAACAAAGAGGTTTTATTTTTTCATTCAAGATTTTTCTTCCATGTTTCCCGGCCACTCAAAAAAAGTCGTCGGTGGAGGTTTTGTCCACGTTTTTCTCAAGACCAAAATTCTTGTAGTGTTGGTTGCATAAATTTCACTAACGTTTTTCTTTGGTTAGATCTTTCGACGACGGTTTTGACGTAGGAGGCAAGAGAAGAGGCATATACGACGTCATCTATATTTGATGGTAAACTTTTGCAGTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGATTCTCGGGCTGCCGGTTTTGATATTGGGTGTTTTGTTGTTCTTGGCTTTCTCTTCTTCTCAACGGATCCCTAA

mRNA sequence

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTCCCTTACAACAAAGAGATCTTTCGACGACGGTTTTGACGTAGGAGGCAAGAGAAGAGGCATATACGACTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGATTCTCGGGCTGCCGGTTTTGATATTGGGTGTTTTGTTGTTCTTGGCTTTCTCTTCTTCTCAACGGATCCCTAA

Coding sequence (CDS)

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTCCCTTACAACAAAGAGATCTTTCGACGACGGTTTTGACGTAGGAGGCAAGAGAAGAGGCATATACGACTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGATTCTCGGGCTGCCGGTTTTGATATTGGGTGTTTTGTTGTTCTTGGCTTTCTCTTCTTCTCAACGGATCCCTAA
Homology
[Close]
BLAST of CSPI03G37870 vs. TrEMBL
Match: A0A0A0LBQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.0e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MVQTIECGTLFQTFPLSSSLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60
          MVQTIECGTLFQTFPLSS LTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT
Sbjct: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60

Query: 61 GGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 96
          GGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP
Sbjct: 61 GGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 95

[Close]
BLAST of CSPI03G37870 vs. NCBI nr
Match: gi|700204317|gb|KGN59450.1| (hypothetical protein Csa_3G821040 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MVQTIECGTLFQTFPLSSSLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60
          MVQTIECGTLFQTFPLSS LTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT
Sbjct: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60

Query: 61 GGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 96
          GGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP
Sbjct: 61 GGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 95

[Close]
BLAST of CSPI03G37870 vs. NCBI nr
Match: gi|659085140|ref|XP_008443266.1| (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-29
Identity = 79/106 (74.53%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 1   MVQTIECGTLFQTFPLSSSLTTKRSFDDGFDVGGK------RRGIYD-----SKFSDGFT 60
           MVQTIEC TLFQTFPL S LT KRS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61  SVDSFFASVATGGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 96
            VDSFFASVATGGAAASS TVG SRAAGFDIGCFVVLGFLFFS+ P
Sbjct: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

The following BLAST results are available for this feature:
BLAST of CSPI03G37870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G37870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBQ9_CUCSA8.0e-4498.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G821040 PE=4 SV=1[more]
BLAST of CSPI03G37870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G37870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204317|gb|KGN59450.1|1.1e-4398.95hypothetical protein Csa_3G821040 [Cucumis sativus][more]
gi|659085140|ref|XP_008443266.1|2.7e-2974.53PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G37870.1CSPI03G37870.1mRNA