CSPI03G28980 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28980
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	ATP-binding cassette transporter ABC3
Location	Chr3 : 26517980 .. 26519561 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGGACGGGCGGTTGATGTCAATGATCCTTGAGAACTTTCTTCCAAAATGCTAAATAAGTCAGTCTAAATGGTTTATGAAATCTTTCATTTGCACAAACACTCTACTTTCCACTTGACCTTTTAAATTCGGAAGTACAAAGAAGGGGACTTAGCTAAAATCTCTTTTTTCTTGACGAATGATATAATAGAACAATCAAAAGCTTAAATTGATAAATAATGGTAAAATTTGTATGTATATACATATATATATTTGTATTCATCACTAAACTAAAAAACTTAAGTTGACTAATTAAGATGGAATCATTTCATTTCTTGTAATTCTTTAAACTAAGACAAGGAAACTTTTCTTCATTTCAAAGTTAGAGAAGCAAAAGACTGAACATGGACTAAAGTTTTGTTTTTCTCCTGCTTAATTACTTTATCAAGAAATATTACTTGTAAAGACCATGAAGTAAGATGCTATCATTTGCTAGATATCTATGAACAAATCGATGTACATTCTTCACAAATAACTGTTGAAGAATCTCTGTTCTTCTCTGCTTGGCTCTGTTTGTCACCTGAAATTGACTCAAAAACAAAAGCAGTATGTTTTCCTGTTGTTTTCTTCAAATGATAAAATTTAAATGGCCATTGATTAACTCACCAAGGATAACTTGTAATTTAGATTGACATTAGTTTCTTGTTTTATAGCAATCTGTAAATGAAGTCCTTGAGACCACTGAACTTAATAGCATAATGGATTCCTTAGTTGGGATACCTGGTGTCAGTGGCCTATCAACTTAGCAACGTAAACTTTTAATCATAGTTGTGGAGCTTGTTTCCAACCCTTCTATCATTTTCATGGATGAGCCTACCACTGGTTTAGATTGCAAGGCAGCTGCAATTGTCATGCGAGCCATCAAGAATGTGGCTGATACTGGAAGAACAATAGTTTGTACCATCCATCAGCCAAGTATTGACATCTTTGAATTTTTTGATTAGGTAAAACTTTTACTCTTTGCTGTAATGCTTAGTTCTGACATGAGGCATTTCTAGAAATTTAAAACTATGGTAAATGACAAACAAATTTGTTTAGTTTATGTTGACAAGATGGGAAGCACAATATTTTTTTTTAATTTTCTTTTACAATCTTGTGGATTATTTCTGAGTTTGTTTACAAAAATGATTTATGTTTTTGTTTCGAAATTGTTTACAACAATTATTATCAAGTAACATGATTTTATTCAATGAATGAAGTGTCTTATCGGTAAACAAAATGGAAAGAAAAAAAGAAGAAAGGATCTGAAAATCTTTCTGTTCAGAAATTAATTTAGTAGATGCACATACTTATGATTTAAGTTTGATCTCTGTTAAATGGTTCGTCTCTAGACATACATTTAGAAACACTGATCAAATGGCCCCTTCTCATATGCTTAAATTTGTTCTTCGGTAGGCATACAACCACAATGGAATGTACAAGGCCATTAGAGATTCTCAAGAAGTTTATATTTATCCCACTTCAGTGTTATTCCACTTCAGTTTTATTCAGGTTAGTTCCAAC

mRNA sequence

ATGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGGACGGGCGATATCTATGAACAAATCGATGTACATTCTTCACAAATAACTGTTGAAGAATCTCTGTTCTTCTCTGCTTGGCTCTGTTTGTCACCTGAAATTGACTCAAAAACAAAAGCAGTATGTTTTCCTGTTGTTTTCTTCAAATGA

Coding sequence (CDS)

ATGGAGGAATTGTTTGAAGATTTGAAGGCTAATGAGTCAATTGGGACGGGCGATATCTATGAACAAATCGATGTACATTCTTCACAAATAACTGTTGAAGAATCTCTGTTCTTCTCTGCTTGGCTCTGTTTGTCACCTGAAATTGACTCAAAAACAAAAGCAGTATGTTTTCCTGTTGTTTTCTTCAAATGA

Homology

[Close]

BLAST of CSPI03G28980 vs. Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-07
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS QITVEES+ FSAWL L P+IDSKTK
Sbjct: 938 EQTDIHSPQITVEESVIFSAWLRLHPQIDSKTK 970

[Close]

BLAST of CSPI03G28980 vs. TrEMBL
Match: A0A0A0LCW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G653390 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1  MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
          MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA
Sbjct: 1  MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 54

[Close]

BLAST of CSPI03G28980 vs. TrEMBL
Match: A0A0A0LEL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G813820 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-08
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 919 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 952

[Close]

BLAST of CSPI03G28980 vs. TrEMBL
Match: A0A067DMI1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000865mg PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-06
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKAVC 57
           EQ D+HS  IT+EESLFFSAWL L+P+I+SKTKA C
Sbjct: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC 744

[Close]

BLAST of CSPI03G28980 vs. TrEMBL
Match: A0A067DBN4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000865mg PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-06
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKAVC 57
           EQ D+HS  IT+EESLFFSAWL L+P+I+SKTKA C
Sbjct: 738 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC 773

[Close]

BLAST of CSPI03G28980 vs. TrEMBL
Match: F6I4H1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00470 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-06
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ D+HS QIT+EES+ FSAWL LSP+IDSKTKA
Sbjct: 939 EQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKA 972

[Close]

BLAST of CSPI03G28980 vs. TAIR10
Match: AT3G53480.1 (AT3G53480.1 pleiotropic drug resistance 9)

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEES+ +SAWL L+PEID+ TK
Sbjct: 941 EQTDIHSPNITVEESVIYSAWLRLAPEIDATTK 973

[Close]

BLAST of CSPI03G28980 vs. TAIR10
Match: AT2G37280.1 (AT2G37280.1 pleiotropic drug resistance 5)

HSP 1 Score: 49.7 bits (117), Expect = 7.9e-07
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 8   LKANESIGTGDIY-EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           LK  E+      Y EQ D+HS  ITVEESL +SAWL L PEI+ +TK
Sbjct: 890 LKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTK 936

[Close]

BLAST of CSPI03G28980 vs. TAIR10
Match: AT4G15230.1 (AT4G15230.1 pleiotropic drug resistance 2)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-06
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEESL +SAWL L   IDSKTK
Sbjct: 891 EQFDIHSPNITVEESLKYSAWLRLPYNIDSKTK 923

[Close]

BLAST of CSPI03G28980 vs. TAIR10
Match: AT4G15215.1 (AT4G15215.1 pleiotropic drug resistance 13)

HSP 1 Score: 46.2 bits (108), Expect = 8.7e-06
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTK 54
           EQ D+HS  ITVEESL +SAWL L   ID+KTK
Sbjct: 881 EQFDIHSPNITVEESLKYSAWLRLPYNIDAKTK 913

[Close]

BLAST of CSPI03G28980 vs. NCBI nr
Match: gi|700203374|gb|KGN58507.1| (hypothetical protein Csa_3G653390 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1  MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
          MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA
Sbjct: 1  MEELFEDLKANESIGTGDIYEQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 54

[Close]

BLAST of CSPI03G28980 vs. NCBI nr
Match: gi|659084939|ref|XP_008443154.1| (PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-08
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 924 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 957

[Close]

BLAST of CSPI03G28980 vs. NCBI nr
Match: gi|778684998|ref|XP_004136753.2| (PREDICTED: pleiotropic drug resistance protein 3 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-08
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 919 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 952

[Close]

BLAST of CSPI03G28980 vs. NCBI nr
Match: gi|659084937|ref|XP_008443153.1| (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-08
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKA 55
           EQ DVHSSQITVEESLFFSAWL L+PEIDSKTKA
Sbjct: 925 EQTDVHSSQITVEESLFFSAWLRLAPEIDSKTKA 958

[Close]

BLAST of CSPI03G28980 vs. NCBI nr
Match: gi|641820145|gb|KDO40198.1| (hypothetical protein CISIN_1g000865mg [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-06
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 21  EQIDVHSSQITVEESLFFSAWLCLSPEIDSKTKAVC 57
           EQ D+HS  IT+EESLFFSAWL L+P+I+SKTKA C
Sbjct: 738 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC 773

The following BLAST results are available for this feature:

BLAST of CSPI03G28980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PDR3_TOBAC	4.4e-07	75.76	Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1	[more]

BLAST of CSPI03G28980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCW7_CUCSA	5.7e-22	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G653390 PE=4 SV=1	[more]
A0A0A0LEL9_CUCSA	6.1e-08	91.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G813820 PE=3 SV=1	[more]
A0A067DMI1_CITSI	3.4e-06	72.22	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000865mg PE=3 SV=1	[more]
A0A067DBN4_CITSI	3.4e-06	72.22	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000865mg PE=3 SV=1	[more]
F6I4H1_VITVI	4.4e-06	76.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00470 PE=3 SV=...	[more]

BLAST of CSPI03G28980 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53480.1	6.0e-07	66.67	pleiotropic drug resistance 9	[more]
AT2G37280.1	7.9e-07	55.32	pleiotropic drug resistance 5	[more]
AT4G15230.1	3.9e-06	69.70	pleiotropic drug resistance 2	[more]
AT4G15215.1	8.7e-06	66.67	pleiotropic drug resistance 13	[more]

BLAST of CSPI03G28980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203374\|gb\|KGN58507.1\|	8.2e-22	100.00	hypothetical protein Csa_3G653390 [Cucumis sativus]	[more]
gi\|659084939\|ref\|XP_008443154.1\|	8.8e-08	91.18	PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo]	[more]
gi\|778684998\|ref\|XP_004136753.2\|	8.8e-08	91.18	PREDICTED: pleiotropic drug resistance protein 3 [Cucumis sativus]	[more]
gi\|659084937\|ref\|XP_008443153.1\|	8.8e-08	91.18	PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo]	[more]
gi\|641820145\|gb\|KDO40198.1\|	4.8e-06	72.22	hypothetical protein CISIN_1g000865mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28980.1	CSPI03G28980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19241	ATP-BINDING CASSETTE TRANSPORTER	coord: 21..53 score: 3.3
None	No IPR available	PANTHER	PTHR19241:SF259	ABC TRANSPORTER G FAMILY MEMBER 33-RELATED	coord: 21..53 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G28980	Csa3G653390	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G28980	Cucsa.192250	Cucumber (Gy14) v1	cgycpiB303

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G28980	Wax gourd	cpiwgoB245
CSPI03G28980	Cucurbita maxima (Rimu)	cmacpiB245
CSPI03G28980	Cucurbita maxima (Rimu)	cmacpiB258
CSPI03G28980	Cucurbita maxima (Rimu)	cmacpiB453
CSPI03G28980	Cucurbita maxima (Rimu)	cmacpiB456
CSPI03G28980	Cucurbita moschata (Rifu)	cmocpiB231
CSPI03G28980	Cucurbita moschata (Rifu)	cmocpiB234
CSPI03G28980	Cucurbita moschata (Rifu)	cmocpiB245
CSPI03G28980	Cucurbita moschata (Rifu)	cmocpiB441
CSPI03G28980	Melon (DHL92) v3.5.1	cpimeB221
CSPI03G28980	Watermelon (Charleston Gray)	cpiwcgB197
CSPI03G28980	Watermelon (Charleston Gray)	cpiwcgB262
CSPI03G28980	Watermelon (97103) v1	cpiwmB216
CSPI03G28980	Watermelon (97103) v1	cpiwmB203
CSPI03G28980	Cucurbita pepo (Zucchini)	cpecpiB546
CSPI03G28980	Cucurbita pepo (Zucchini)	cpecpiB564
CSPI03G28980	Cucurbita pepo (Zucchini)	cpecpiB614
CSPI03G28980	Bottle gourd (USVL1VR-Ls)	cpilsiB232
CSPI03G28980	Melon (DHL92) v3.6.1	cpimedB215
CSPI03G28980	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G28980	Silver-seed gourd	carcpiB0130
CSPI03G28980	Silver-seed gourd	carcpiB0795
CSPI03G28980	Silver-seed gourd	carcpiB0850
CSPI03G28980	Silver-seed gourd	carcpiB0851
CSPI03G28980	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G28980	Watermelon (97103) v2	cpiwmbB191
CSPI03G28980	Watermelon (97103) v2	cpiwmbB248