CSPI03G23890 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G23890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 20992997 .. 20993331 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGACTTGAGTTTGGATCTAGAGTATATTGATATAGGGATCGAGAACGTGAAGGATTTGGAGAGGCAGAGATGTGGTGACTTGCGTAAGCGACGGAAAGCAGTGAAACATGAGATCTTGATGTGAGCGACAAAATTCAGTTGGAATCATGATCTGGAATGGAGACGTCGTGCGAGAACTTGATCCAAGACGTCGTGCAAGATATGAAACCGTTGTGGGTTTGCTTTAGAGGTGTCGTCGGAGAACTGGAACGAAGTCGTTTGTTGGAGATCTGGAACAGAGGCAGTCATCGAACGTCAAAGACTGACGGCGATACTCTTTTTAAAAAATAT

mRNA sequence

ATGGTGGACTTGAGTTTGGATCTAGAGTATATTGATATAGGGATCGAGAACGTGAAGGATTTGGAGAGGCAGAGATGTGGTGACTTGCGTAAGCGACGGAAAGCAGTGAAACATGAGATCTTGATAGGTGTCGTCGGAGAACTGGAACGAAGTCGTTTGTTGGAGATCTGGAACAGAGGCAGTCATCGAACGTCAAAGACTGACGGCGATACTCTTTTTAAAAAATAT

Coding sequence (CDS)

ATGGTGGACTTGAGTTTGGATCTAGAGTATATTGATATAGGGATCGAGAACGTGAAGGATTTGGAGAGGCAGAGATGTGGTGACTTGCGTAAGCGACGGAAAGCAGTGAAACATGAGATCTTGATAGGTGTCGTCGGAGAACTGGAACGAAGTCGTTTGTTGGAGATCTGGAACAGAGGCAGTCATCGAACGTCAAAGACTGACGGCGATACTCTTTTTAAAAAATAT
Homology
[Close]
BLAST of CSPI03G23890 vs. TrEMBL
Match: A0A0A0L7Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G455630 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-30
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 1  MVDLSLDLEYIDIGIENVKDLERQRCGDLRKRRKAVKHEILIGVVGELERSRLLEIWNRG 60
          MVDLSLDLEYIDIGIEN+KDLERQRCGDLR+RRKA K EILIGVVGELER+RLLEIWNRG
Sbjct: 1  MVDLSLDLEYIDIGIENMKDLERQRCGDLRRRRKAAKCEILIGVVGELERNRLLEIWNRG 60

Query: 61 SHRTSKTDGDTLFKKY 77
          SHRTSKTD  TLFKKY
Sbjct: 61 SHRTSKTDDGTLFKKY 76

[Close]
BLAST of CSPI03G23890 vs. NCBI nr
Match: gi|700202907|gb|KGN58040.1| (hypothetical protein Csa_3G455630 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 1  MVDLSLDLEYIDIGIENVKDLERQRCGDLRKRRKAVKHEILIGVVGELERSRLLEIWNRG 60
          MVDLSLDLEYIDIGIEN+KDLERQRCGDLR+RRKA K EILIGVVGELER+RLLEIWNRG
Sbjct: 1  MVDLSLDLEYIDIGIENMKDLERQRCGDLRRRRKAAKCEILIGVVGELERNRLLEIWNRG 60

Query: 61 SHRTSKTDGDTLFKKY 77
          SHRTSKTD  TLFKKY
Sbjct: 61 SHRTSKTDDGTLFKKY 76

The following BLAST results are available for this feature:
BLAST of CSPI03G23890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G23890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7Z8_CUCSA1.0e-3090.79Uncharacterized protein OS=Cucumis sativus GN=Csa_3G455630 PE=4 SV=1[more]
BLAST of CSPI03G23890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G23890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202907|gb|KGN58040.1|1.5e-3090.79hypothetical protein Csa_3G455630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23890.1CSPI03G23890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G23890Csa3G455630Cucumber (Chinese Long) v2cpicuB120
CSPI03G23890CsaV3_3G023690Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G23890Watermelon (97103) v2cpiwmbB206
CSPI03G23890Watermelon (97103) v2cpiwmbB245
CSPI03G23890Watermelon (97103) v2cpiwmbB251
CSPI03G23890Watermelon (97103) v2cpiwmbB269
CSPI03G23890Wax gourdcpiwgoB274
CSPI03G23890Wax gourdcpiwgoB322
CSPI03G23890Wax gourdcpiwgoB357
CSPI03G23890Wild cucumber (PI 183967)cpicpiB022
CSPI03G23890Cucumber (Gy14) v1cgycpiB012
CSPI03G23890Cucumber (Gy14) v1cgycpiB439
CSPI03G23890Cucurbita maxima (Rimu)cmacpiB248
CSPI03G23890Cucurbita maxima (Rimu)cmacpiB364
CSPI03G23890Cucurbita maxima (Rimu)cmacpiB451
CSPI03G23890Cucurbita maxima (Rimu)cmacpiB464
CSPI03G23890Cucurbita maxima (Rimu)cmacpiB912
CSPI03G23890Cucurbita moschata (Rifu)cmocpiB237
CSPI03G23890Cucurbita moschata (Rifu)cmocpiB355
CSPI03G23890Cucurbita moschata (Rifu)cmocpiB440
CSPI03G23890Cucurbita moschata (Rifu)cmocpiB453
CSPI03G23890Cucurbita moschata (Rifu)cmocpiB890
CSPI03G23890Cucumber (Chinese Long) v2cpicuB108
CSPI03G23890Melon (DHL92) v3.5.1cpimeB192
CSPI03G23890Melon (DHL92) v3.5.1cpimeB219
CSPI03G23890Watermelon (Charleston Gray)cpiwcgB187
CSPI03G23890Watermelon (Charleston Gray)cpiwcgB222
CSPI03G23890Watermelon (Charleston Gray)cpiwcgB265
CSPI03G23890Watermelon (97103) v1cpiwmB182
CSPI03G23890Watermelon (97103) v1cpiwmB214
CSPI03G23890Watermelon (97103) v1cpiwmB217
CSPI03G23890Cucurbita pepo (Zucchini)cpecpiB563
CSPI03G23890Cucurbita pepo (Zucchini)cpecpiB606
CSPI03G23890Bottle gourd (USVL1VR-Ls)cpilsiB162
CSPI03G23890Bottle gourd (USVL1VR-Ls)cpilsiB178
CSPI03G23890Bottle gourd (USVL1VR-Ls)cpilsiB226
CSPI03G23890Bottle gourd (USVL1VR-Ls)cpilsiB229
CSPI03G23890Bottle gourd (USVL1VR-Ls)cpilsiB235
CSPI03G23890Melon (DHL92) v3.6.1cpimedB184
CSPI03G23890Melon (DHL92) v3.6.1cpimedB212
CSPI03G23890Cucumber (Gy14) v2cgybcpiB023
CSPI03G23890Cucumber (Gy14) v2cgybcpiB110
CSPI03G23890Silver-seed gourdcarcpiB0131
CSPI03G23890Silver-seed gourdcarcpiB0132
CSPI03G23890Silver-seed gourdcarcpiB0231
CSPI03G23890Silver-seed gourdcarcpiB0777
CSPI03G23890Silver-seed gourdcarcpiB1062