CSPI03G19860 (gene) Wild cucumber (PI 183967)

NameCSPI03G19860
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr3 : 15514941 .. 15515620 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAAATTCACTTCCATCTATTTCTGTAGATAACTCTTTCTGACTGGCTTCAACTCCAATTTTTCCACGTACCTCTGTTCCTCCGTCCATCCAACTTCGATCCACCCACCTGATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCTACTCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGCTCAATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGACAACTTCGTCAACTCGATTTCAATAATGTTTTTCTTAATAGACGTCTTGAAGAAACTGTGTACATGACACAACCTCCCGAGTATGTTAATCCATCATTTTTCGACCATGTTTGTAAGCTTGACAAAGCTATTTATGGCTTGAAGCAATTTCCACGTGCGTGGAATACAACTTTTTCCAGAAAATTACTCAGTTGGGGTTTTGTGAATTCATGATCTGATTCTTCTCTGTTTATATTTCGCCGTTAGAACT

mRNA sequence

ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCTACTCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGCTCAATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGA

Coding sequence (CDS)

ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCTACTCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGCTCAATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGA
BLAST of CSPI03G19860 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-08
Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTP-----------------QWHLV 60
           M+TR+K+G+ K     + + T     EP  +  AL  P                  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIR 101
           P    QNI+G KWVF+ K +SD ++ R  A+LVAKG F+Q   I F+         +TIR
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKG-FHQEEGIYFVETYSPVVRTATIR 120

BLAST of CSPI03G19860 vs. TrEMBL
Match: A0A151RJ84_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_036006 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.6e-15
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALP-----------------TPQWHLV 60
           M+TR+K+G+FK KA+  S     T+ EPTC   AL                     W LV
Sbjct: 1   MVTRSKNGIFKLKAFQVSKHPMPTVVEPTCASQALKHIVWKQAMSDEFNALMKNGTWSLV 60

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFLAS--------TIR 105
           P  P+ N++ NKWVFR+KRN+D SI R+ A++VAKG F+Q   +DF  +        TI+
Sbjct: 61  PPQPHYNVIRNKWVFRIKRNTDGSIARHKARMVAKG-FHQRPGLDFKETFSPVIKPQTIK 120

BLAST of CSPI03G19860 vs. TrEMBL
Match: A0A151THY7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012893 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-14
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQW-----------------HLV 60
           M+TR K G+FK KA +          EPT +++A  +PQW                  LV
Sbjct: 1   MVTRGKVGIFKPKAMVAEM-------EPTTVREAFQSPQWVQAMHEELNALVKNQTWDLV 60

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFLAS--------TIR 106
           P  P++  VG+KW+FRLK N D SI +Y A++VA+G + Q H +D+  +        TIR
Sbjct: 61  PLPPHRKPVGSKWIFRLKHNPDGSISKYKARVVARG-YTQQHGLDYQETFSPVVKHVTIR 120

BLAST of CSPI03G19860 vs. TrEMBL
Match: A5BMF5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037657 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-13
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNL-TLTEPTCIKDALPTPQWH-----------------L 60
           M TRAK+G+FK K +L+ + T    L EP   K+A+  P+W                  L
Sbjct: 730 MTTRAKNGIFKPKIFLSPTKTIFHPLCEPNSFKEAVKVPEWQQAMHLEFEALMSNKTWVL 789

Query: 61  VPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTI 105
           VP  P QNI+G  WV++LK   D +++RY A+LVAKG F+Q    D+          +TI
Sbjct: 790 VPPPPNQNIIGCHWVYKLKYKPDGTVERYKARLVAKG-FHQTPSFDYFETFSPVVKPTTI 849

BLAST of CSPI03G19860 vs. TrEMBL
Match: Q5W6W4_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OSJNBa0065C11.13 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.0e-13
Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 1

Query: 2   ITRAKSGMFKSKAWLTSSATNLTL---TEPTCIKDALPTPQW-----------------H 61
           +TR + G+ K K ++  +   L L   +EPT + DA+    W                 H
Sbjct: 513 VTRLQQGIRKPKCYMDGTLRYLNLVTTSEPTSLYDAMNNSNWKATMDSEFNALQKNKTWH 572

Query: 62  LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDF--------LAST 106
           LVPS+  +NI+  KWV+++K+ +D SI RY A+LVAKG F Q + ID+          +T
Sbjct: 573 LVPSTSGKNIIDCKWVYKIKKKADGSIDRYKARLVAKG-FKQRYGIDYEDTFSPVVKVAT 632

BLAST of CSPI03G19860 vs. TrEMBL
Match: A5C219_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023230 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.0e-13
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSS---ATNLTLTEPTCIKDALPTPQWH---------------- 60
           MITRAK+G+FK K +       + +L   EP C+K  L  P W                 
Sbjct: 247 MITRAKAGIFKPKVYAALKHPLSFSLGSIEPMCVKQVLADPNWKIAMKEEYKALMRNDTW 306

Query: 61  -LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDF--------LAS 106
            LVP  P  N+VGNKWVF+LK + D ++ ++ A LVAKG F+Q   +DF          +
Sbjct: 307 DLVPYQPQYNVVGNKWVFKLKFHLDDTLNKHKASLVAKG-FHQTPGVDFSETYSPAIKLA 366

BLAST of CSPI03G19860 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-09
Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTP-----------------QWHLV 60
           M+TR+K+G+ K     + + T     EP  +  AL  P                  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIR 101
           P    QNI+G KWVF+ K +SD ++ R  A+LVAKG F+Q   I F+         +TIR
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKG-FHQEEGIYFVETYSPVVRTATIR 120

BLAST of CSPI03G19860 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1

Query: 37  TPQWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL 91
           T  W +    P +  +G KWV+++K NSD +I+RY A+LVAKG + Q   IDF+
Sbjct: 112 THTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKG-YTQQEGIDFI 164

BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|1012331106|gb|KYP42598.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALP-----------------TPQWHLV 60
           M+TR+K+G+FK KA+  S     T+ EPTC   AL                     W LV
Sbjct: 1   MVTRSKNGIFKLKAFQVSKHPMPTVVEPTCASQALKHIVWKQAMSDEFNALMKNGTWSLV 60

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFLAS--------TIR 105
           P  P+ N++ NKWVFR+KRN+D SI R+ A++VAKG F+Q   +DF  +        TI+
Sbjct: 61  PPQPHYNVIRNKWVFRIKRNTDGSIARHKARMVAKG-FHQRPGLDFKETFSPVIKPQTIK 120

BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|729338149|ref|XP_010539104.1| (PREDICTED: uncharacterized protein LOC104813235 [Tarenaya hassleriana])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 59/132 (44.70%), Postives = 72/132 (54.55%), Query Frame = 1

Query: 1   MITRAKSGMFKS--KAWLTSSATNLTLTEPTCIKDALPTPQWH----------------- 60
           M+TR+K+ + K   K  LTS+       EPTC+  AL  P+W                  
Sbjct: 43  MVTRSKNNITKPHPKLSLTSALHPTHDVEPTCVSQALKDPKWRDAMAEEFNALLRNGTWT 102

Query: 61  LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------AST 106
           LVPS    N+VG KWVFR KR+SD SI RY A+LVAKG F+Q   ID+          +T
Sbjct: 103 LVPSRSSYNVVGCKWVFRTKRHSDGSIDRYKARLVAKG-FHQRPGIDYTDTFSPVIKHAT 162

BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|985430528|ref|XP_015386469.1| (PREDICTED: uncharacterized protein LOC107177320 [Citrus sinensis])

HSP 1 Score: 85.1 bits (209), Expect = 8.0e-14
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLT--EPTCIKDALPTPQWH----------------- 60
           MITR+K+G+FK K +      N+TL   EP  IK+A+  P+W                  
Sbjct: 480 MITRSKAGIFKLKLY------NVTLVHKEPESIKEAMENPKWFATMKDEYNALMDNKTWS 539

Query: 61  LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGF-------FYQHHDIDFLASTI 105
           LVP S  Q IVGNKWVFR+K+NSD S+ +Y A+LVAKGF       +++       ++T+
Sbjct: 540 LVPKSAGQKIVGNKWVFRVKQNSDGSLAKYKARLVAKGFQQIEGVNYFETFSPVVKSATV 599

BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|1012355409|gb|KYP66596.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 85.1 bits (209), Expect = 8.0e-14
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQW-----------------HLV 60
           M+TR K G+FK KA +          EPT +++A  +PQW                  LV
Sbjct: 1   MVTRGKVGIFKPKAMVAEM-------EPTTVREAFQSPQWVQAMHEELNALVKNQTWDLV 60

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFLAS--------TIR 106
           P  P++  VG+KW+FRLK N D SI +Y A++VA+G + Q H +D+  +        TIR
Sbjct: 61  PLPPHRKPVGSKWIFRLKHNPDGSISKYKARVVARG-YTQQHGLDYQETFSPVVKHVTIR 120

BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|720054804|ref|XP_010273170.1| (PREDICTED: uncharacterized protein LOC104608783 [Nelumbo nucifera])

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 52/129 (40.31%), Postives = 69/129 (53.49%), Query Frame = 1

Query: 1   MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWH-----------------LV 60
           M+TR+K+G+FK  +++ S+       EPT    A   P+W                  LV
Sbjct: 345 MVTRSKAGIFKPISYIASAHPLPPDVEPTHFSSAYKHPKWRDAMHAEFDALKKNDTWVLV 404

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDF--------LASTIR 105
           P   Y N+VG KWVFRLK N + SI RY A+LVAKG F Q   +D+          +TIR
Sbjct: 405 PRQSYMNLVGCKWVFRLKHNPNGSISRYKARLVAKG-FNQREGLDYHETFSPVVKPTTIR 464

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M820_ARATH3.8e-0833.60Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
Match NameE-valueIdentityDescription
A0A151RJ84_CAJCA8.6e-1538.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151THY7_CAJCA5.6e-1438.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5BMF5_VITVI6.1e-1339.23Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037657 PE=4 SV=1[more]
Q5W6W4_ORYSJ8.0e-1338.64Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OSJNBa0065C11.13 PE=4... [more]
A5C219_VITVI8.0e-1337.59Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023230 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATMG00820.12.2e-0933.60ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
AT4G23160.12.0e-0744.44 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
Match NameE-valueIdentityDescription
gi|1012331106|gb|KYP42598.1|1.2e-1438.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|729338149|ref|XP_010539104.1|1.6e-1444.70PREDICTED: uncharacterized protein LOC104813235 [Tarenaya hassleriana][more]
gi|985430528|ref|XP_015386469.1|8.0e-1440.77PREDICTED: uncharacterized protein LOC107177320 [Citrus sinensis][more]
gi|1012355409|gb|KYP66596.1|8.0e-1438.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|720054804|ref|XP_010273170.1|4.0e-1340.31PREDICTED: uncharacterized protein LOC104608783 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015074 DNA integration
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005488 binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19860.1CSPI03G19860.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 39..94
score: 9.6
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 40..105
score: 7.4
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 40..105
score: 7.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G19860CsaV3_3G019920Cucumber (Chinese Long) v3cpicucB144
CSPI03G19860CmoCh18G013450Cucurbita moschata (Rifu)cmocpiB405
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G19860Silver-seed gourdcarcpiB0573
CSPI03G19860Silver-seed gourdcarcpiB1024
CSPI03G19860Cucumber (Chinese Long) v3cpicucB166
CSPI03G19860Watermelon (97103) v2cpiwmbB177
CSPI03G19860Watermelon (97103) v2cpiwmbB221
CSPI03G19860Wax gourdcpiwgoB263
CSPI03G19860Wax gourdcpiwgoB283
CSPI03G19860Wild cucumber (PI 183967)cpicpiB114
CSPI03G19860Cucumber (Gy14) v1cgycpiB003
CSPI03G19860Cucumber (Gy14) v1cgycpiB321
CSPI03G19860Cucurbita maxima (Rimu)cmacpiB290
CSPI03G19860Cucurbita maxima (Rimu)cmacpiB327
CSPI03G19860Cucurbita maxima (Rimu)cmacpiB417
CSPI03G19860Cucurbita moschata (Rifu)cmocpiB280
CSPI03G19860Cucurbita moschata (Rifu)cmocpiB318
CSPI03G19860Cucurbita moschata (Rifu)cmocpiB601
CSPI03G19860Cucumber (Chinese Long) v2cpicuB120
CSPI03G19860Cucumber (Chinese Long) v2cpicuB139
CSPI03G19860Melon (DHL92) v3.5.1cpimeB169
CSPI03G19860Melon (DHL92) v3.5.1cpimeB241
CSPI03G19860Watermelon (Charleston Gray)cpiwcgB207
CSPI03G19860Watermelon (Charleston Gray)cpiwcgB237
CSPI03G19860Watermelon (97103) v1cpiwmB242
CSPI03G19860Watermelon (97103) v1cpiwmB258
CSPI03G19860Cucurbita pepo (Zucchini)cpecpiB032
CSPI03G19860Cucurbita pepo (Zucchini)cpecpiB209
CSPI03G19860Cucurbita pepo (Zucchini)cpecpiB723
CSPI03G19860Bottle gourd (USVL1VR-Ls)cpilsiB151
CSPI03G19860Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G19860Melon (DHL92) v3.6.1cpimedB160
CSPI03G19860Melon (DHL92) v3.6.1cpimedB239
CSPI03G19860Cucumber (Gy14) v2cgybcpiB110
CSPI03G19860Cucumber (Gy14) v2cgybcpiB210