CSPI03G19860 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAAAATTCACTTCCATCTATTTCTGTAGATAACTCTTTCTGACTGGCTTCAACTCCAATTTTTCCACGTACCTCTGTTCCTCCGTCCATCCAACTTCGATCCACCCACCTGATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCTACTCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGCTCAATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGACAACTTCGTCAACTCGATTTCAATAATGTTTTTCTTAATAGACGTCTTGAAGAAACTGTGTACATGACACAACCTCCCGAGTATGTTAATCCATCATTTTTCGACCATGTTTGTAAGCTTGACAAAGCTATTTATGGCTTGAAGCAATTTCCACGTGCGTGGAATACAACTTTTTCCAGAAAATTACTCAGTTGGGGTTTTGTGAATTCATGATCTGATTCTTCTCTGTTTATATTTCGCCGTTAGAACT ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCTACTCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGCTCAATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGA ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCTACTCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGCTCAATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGA
BLAST of CSPI03G19860 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 3.8e-08 Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 1
BLAST of CSPI03G19860 vs. TrEMBL
Match: A0A151RJ84_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_036006 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 8.6e-15 Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 1
BLAST of CSPI03G19860 vs. TrEMBL
Match: A0A151THY7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012893 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 5.6e-14 Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1
BLAST of CSPI03G19860 vs. TrEMBL
Match: A5BMF5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037657 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.1e-13 Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 1
BLAST of CSPI03G19860 vs. TrEMBL
Match: Q5W6W4_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OSJNBa0065C11.13 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 8.0e-13 Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 1
BLAST of CSPI03G19860 vs. TrEMBL
Match: A5C219_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023230 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 8.0e-13 Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 1
BLAST of CSPI03G19860 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)) HSP 1 Score: 58.9 bits (141), Expect = 2.2e-09 Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 1
BLAST of CSPI03G19860 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8) HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07 Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|1012331106|gb|KYP42598.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]) HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14 Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 1
BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|729338149|ref|XP_010539104.1| (PREDICTED: uncharacterized protein LOC104813235 [Tarenaya hassleriana]) HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14 Identity = 59/132 (44.70%), Postives = 72/132 (54.55%), Query Frame = 1
BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|985430528|ref|XP_015386469.1| (PREDICTED: uncharacterized protein LOC107177320 [Citrus sinensis]) HSP 1 Score: 85.1 bits (209), Expect = 8.0e-14 Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|1012355409|gb|KYP66596.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]) HSP 1 Score: 85.1 bits (209), Expect = 8.0e-14 Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1
BLAST of CSPI03G19860 vs. NCBI nr
Match: gi|720054804|ref|XP_010273170.1| (PREDICTED: uncharacterized protein LOC104608783 [Nelumbo nucifera]) HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13 Identity = 52/129 (40.31%), Postives = 69/129 (53.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |