CSPI03G18290 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18290
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 13928434 .. 13928661 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTTTCGTCGGTAATAGAAGGAGGTTTGGCGTTAGTGAGAACTTATGGGTTTCAGTTTGAGGTGTGCCATGAGAGGAAGAAGAAACTCGAAGCGAAAGGGTTTCAAGAAGGAATGAGGGTTGAGGTGAAATATTGGGTCGAGAGGATGAATTTAATGAAGTATTTAGAGAAAGGGATTAAGGATAGGTTTCAGATGGGCTGGGGCTTAAATTGGGTTGAGGGG

mRNA sequence

ATGTTGGTTTCGTCGGTAATAGAAGGAGGTTTGGCGTTAGTGAGAACTTATGGGTTTCAGTTTGAGGTGTGCCATGAGAGGAAGAAGAAACTCGAAGCGAAAGGGTTTCAAGAAGGAATGAGGGTTGAGGTGAAATATTGGGTCGAGAGGATGAATTTAATGAAGTATTTAGAGAAAGGGATTAAGGATAGGTTTCAGATGGGCTGGGGCTTAAATTGGGTTGAGGGG

Coding sequence (CDS)

ATGTTGGTTTCGTCGGTAATAGAAGGAGGTTTGGCGTTAGTGAGAACTTATGGGTTTCAGTTTGAGGTGTGCCATGAGAGGAAGAAGAAACTCGAAGCGAAAGGGTTTCAAGAAGGAATGAGGGTTGAGGTGAAATATTGGGTCGAGAGGATGAATTTAATGAAGTATTTAGAGAAAGGGATTAAGGATAGGTTTCAGATGGGCTGGGGCTTAAATTGGGTTGAGGGG
Homology
[Close]
BLAST of CSPI03G18290 vs. TrEMBL
Match: A0A0A0LA87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202210 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 

Query: 1  MLVSSVIEGGLALVRTYGFQFEVCHERKKKLEAKGFQEGMRVEVKYWVERMNLMKYLEKG 60
          ML SSVI+GGLALVRTYGFQFEVCHERKKKLEAKGFQEGMRVEVKYWVERMNLMKYLEKG
Sbjct: 1  MLDSSVIKGGLALVRTYGFQFEVCHERKKKLEAKGFQEGMRVEVKYWVERMNLMKYLEKG 60

Query: 61 IKDRFQMGWGLNWVEG 77
          IKDRFQMGWGLNWVEG
Sbjct: 61 IKDRFQMGWGLNWVEG 76

[Close]
BLAST of CSPI03G18290 vs. NCBI nr
Match: gi|700202379|gb|KGN57512.1| (hypothetical protein Csa_3G202210 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 

Query: 1  MLVSSVIEGGLALVRTYGFQFEVCHERKKKLEAKGFQEGMRVEVKYWVERMNLMKYLEKG 60
          ML SSVI+GGLALVRTYGFQFEVCHERKKKLEAKGFQEGMRVEVKYWVERMNLMKYLEKG
Sbjct: 1  MLDSSVIKGGLALVRTYGFQFEVCHERKKKLEAKGFQEGMRVEVKYWVERMNLMKYLEKG 60

Query: 61 IKDRFQMGWGLNWVEG 77
          IKDRFQMGWGLNWVEG
Sbjct: 61 IKDRFQMGWGLNWVEG 76

The following BLAST results are available for this feature:
BLAST of CSPI03G18290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA87_CUCSA1.4e-3597.37Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202210 PE=4 SV=1[more]
BLAST of CSPI03G18290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202379|gb|KGN57512.1|2.0e-3597.37hypothetical protein Csa_3G202210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18290.1CSPI03G18290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G18290Csa3G202210Cucumber (Chinese Long) v2cpicuB120
CSPI03G18290CsaV3_3G018350Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18290Wax gourdcpiwgoB283
CSPI03G18290Wax gourdcpiwgoB311
CSPI03G18290Wild cucumber (PI 183967)cpicpiB144
CSPI03G18290Cucumber (Gy14) v1cgycpiB333
CSPI03G18290Cucumber (Gy14) v1cgycpiB366
CSPI03G18290Cucurbita maxima (Rimu)cmacpiB125
CSPI03G18290Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18290Cucurbita maxima (Rimu)cmacpiB520
CSPI03G18290Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18290Cucurbita moschata (Rifu)cmocpiB120
CSPI03G18290Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18290Cucurbita moschata (Rifu)cmocpiB510
CSPI03G18290Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18290Cucumber (Chinese Long) v2cpicuB165
CSPI03G18290Melon (DHL92) v3.5.1cpimeB185
CSPI03G18290Melon (DHL92) v3.5.1cpimeB241
CSPI03G18290Watermelon (Charleston Gray)cpiwcgB217
CSPI03G18290Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18290Watermelon (97103) v1cpiwmB242
CSPI03G18290Watermelon (97103) v1cpiwmB271
CSPI03G18290Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18290Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18290Cucurbita pepo (Zucchini)cpecpiB680
CSPI03G18290Bottle gourd (USVL1VR-Ls)cpilsiB188
CSPI03G18290Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G18290Melon (DHL92) v3.6.1cpimedB180
CSPI03G18290Melon (DHL92) v3.6.1cpimedB239
CSPI03G18290Cucumber (Gy14) v2cgybcpiB110
CSPI03G18290Cucumber (Gy14) v2cgybcpiB315
CSPI03G18290Silver-seed gourdcarcpiB0326
CSPI03G18290Silver-seed gourdcarcpiB0405
CSPI03G18290Cucumber (Chinese Long) v3cpicucB193
CSPI03G18290Watermelon (97103) v2cpiwmbB203
CSPI03G18290Watermelon (97103) v2cpiwmbB221