CSPI03G17940 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G17940
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAutophagy protein 5
LocationChr3 : 13600641 .. 13605001 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTAGCATTATGTAATCCCACACTGCTTACCTGCCCTTTTGTAATTGCATACTATCAATGAAATTATAATTATGTCTCACATAAAAAAAATAGATAATAATAAATTGAGATTGCCCCGAGTGGATCCTTCTCTAATTTCTGTGACTTAGTTGTCAGTTTAGTTTGACAACAATATTTCCATGATTGTTTAGTACGTTAGTATTTACAATTTTAGAAGATCATAGTTTTAGTCATTTATTCAGAATGAACAATCCTGGTAAACGTTTGTGTATCTCATGAAGAATCCGGTTCGTGCTTCTCAGGAATATACCAACTGGTGTACTCTTTGACCTTCTATGTGCAGAACCAGAAAGACCATGGAATCTAACGGTACAATTCTATCTCTTCGTCTTTAAAGTTCAAGCTGCGTTTTCTTAATGTAACTGAGTCCCAATTTCATTTGAATTTAGGTTGAACAAAAATGTATTAATCACTTTATACTCTTGCTCCAAATTAATAATGGTATCAATTTAAACCTTAAACTTTCAAAATAGATCAATTTAGACCCTTCACTAGCGTATTATGGCTTTTTCACTTAATTCAATTTAAAATAAACTCTAAGTCGTCTAAATAAAAATATTATTCTCCAGTTTTGTTGAGGCTCACCCAGGCGCTCGCCTAAGATGAGAGGCGAGGAGAGGGAGGCCATACCGCCTTGCAAATACCCAAGGCGAGCACCTTCAATGATGAGAGGCGAGGAGGTTCTCGCCTTTCTTCTTTTTTATACCATTCTTCAAGTTTTTTGTTTTTCTTCAAATTTTCAAGAATGAAGGTTAGAAGAAAATGGAAGAAGTCATCTTTTTGCTTAGCCATCCATTGGTTGCTTATCAAAAATGATGGAAAGGAAGAAGATCGGTTGGAAATCAGAACGGGAGAAGAGATGTTATGTTCTCTTTTTTTTTAAAAAGAAATTCCTAGAAGAGAATTGAAGGGTTGGCTGCTGGAAATAAAGTAACGTTGGCTGCATGCTAACCGAACTGCCAAATGGCAAAATTTCTACCCCATTACTCAAAAAACTATCTTTTACCCATTTAAAAAGGATTTTTGTTTCTATTTCTTTTGTCAAATATTTTTAGTTAATTTTTCTTAATAATTTTGACTTTTTAACCTTTTTAAAATCTAAGTATTTTTTGTCTATAATTGTCAAAAATAATATTTATTCATTATTTTCTAAAGTGTGCCTTGCTTCAATCGGGAACGCTTTTTTTGTTGCATCTTACCTTAAGGTGATTATAGAGCGTGTCGCCTTAAAGTGCGCCTTGTGCTTTGAAAACACTGTTTTCTCCTATCGTACCAAAGCAATAAGAAAAGTTTATCATGTAATTCTTTCTAACTAGGCATAAAAAATTGAGAAAGAAAATAAGAAAGCCACTCACATTAATGAAATCTGGTACTATTTATTTTATTTAAAAAAATTTCTCTAATATGCTGTTAATCTATGCATTTCCAGAAATCTTACACATACACATGTGACAATTATGTATTTTTAGTTCTAAGTTTGAATCTTAATAGATGGTCAAAACTGATCCACTTAGAACAATTTTGGGTTTAATTGTAATATAACCCCCAAAGTTCAGCGGTATAATTTAATTTTTTTCCAAAAATTTATCAAATGAAAAGGTTTCAAACTTGCCTTTGTTGCACTTGAGGATTAATATATATGTGGATCTGGGTCTTGATTGTGTATCATGTGATTGCTGTTGCATTCCAGAGTATGAGAACCCTAGGTGCGTTAATGATGAATTTAGGATTGGCTGAACTTTTTGTAGGAATGGAATTTCAGCTACTTCAACGTTTCTGTTTAAATCTCTTCTTTCAGTATTGTAACTCAATCCAAAGAAACATTTTAATAAAGTTTCATGGAATCCGGCATACTTTTTAGTCTCTGTCCTTGGAGTATGAACGTAAGAGAAGACAGAAGTAGAAGGCAACTTTTGCTCAGCTTCCAAAAAAAGAACGTCAATATATCCGCACTGCAATTAGACTTCTGTAATTTGTTTCAATGTTTTTAACCTTTGAGAAAAGGGTTAATTGAGCAATTGCCAGGGTTAATTGCACTTCACTACACTAATGTGTAAGAACTTAGCTCTCTAAGCCAAGTGGCTGTCACTCTCTAGCTTAAAGGCAGATACTTCATGGTACAAATCAAACACCTTTTTCACATTTTAGGCTTTTGAGTCTCATTTCCACACACATTGCAGTCAAATGCCGGTTTCCAAATCCCTTAGTTCCTAAATCTAGACTTTCACGTTCCCGTTCCCTATTACCAAATGCTTCTCTAAACATTTTTACCTACCTATGAGTTCAAATACAATATCTACTCTCAAAAATGAATTTGATTCCTGATGTATCTTAGCTAAATCTAAGACTATTTAAATTAGGTATTGCCTTTACTTTCTCATATTTTTTGACTAGTGTGACATGAAAATCATCTCACTTTTTTTAACAGGTACATTTTAGAGGTTATCCAAGACAATTGTTAATTCCTTGTGAAGGTGAAGATAGTATAAAGTGGAGCTTTATTAACTCATTAAAAGAGGTCAGTCGACGGTACTTTTTACTTTCTTGGTTGAATTATAAGTTTAGTCTTTGAACTTTGAGATTTCTAGGAAAGTTTAGGTTGCCATTAAATATAAAATTATAGATCTAATAGATCAGTTCATTCTAAAAAATAATAATTTTTCAAAGACCTGTTAGACACGAGATTAAAAGTTTAAGGACCTATTAACCACAAATTGAGAGTTTTGGGACCTACTAAACTCCTTATATCTTCTTTTTGAATAAATCAGGTCCTTTGAGACACTTTTGAAAGTTAGGGTCTAAATGACACAACCTAAAAATTCTAAGACTAAACTTTTAATTTAACCTATCTTCTTTAAATCCAGTCGAAATCGTTATGATTTCTTCAGGAATACAACTTTGTTTTAAGGCACCAAATGGAGGTAGAAAATAAAAGGTTAAATACCAAGCTTAGTTTTATAACTTCCATGTTTGTGTCTATAGGTCCCTAGACTCTTTAGTTGGTGTTTAATAAATCCCTAAAATTTAAAAATATTAGATAGGCCCTTAAACTTTTAATTTTGTGCTTTAGTAGATTTTTTAATTTTATGTTTGATAGAACATTAAACTTCTAATTGTGTGACCCTACATTTATCAAACCAGAGAGCTATGAGACTTTTGTTATAAGACTCACCAACCAGTCCAGTTAGATATTTACCATCATATATACCGTCGGACCCAATAGATGTTCAATTCTGTCCAACTAGAAGTGCCTTTTACAAAGGCAGAGATCTGGAAGGCAGTCACAAATCTGGCACGAATAAGCTTTTGGGACAATACAGTTTTACAGTGGAGTTCTTCTAGAATGCCTAGATCAACATCCTTAGAGTGTTCCATTTTTTTCCAGAATTCTATCATCAATGTTGGGCTTAAGAGGAGACTCATATTTACCTCACTCTCAAGAAATTGGATCCCAAATAAGTGGGGGACTATAGGCATATAAGTCTTGCATCTTGTTGATACAAATCATTACAGGGGTTCTCACTGATAAACTGAAATGTGTGCTGCCATGTTCTTTTTGCAAAAGTCAATTGGCCTTGTGGTCGGTTGACAAATCCCTGATGCTTCCTTCATTGCAAACAAGCTCATTGAGCATCCTTGTAAATCCTTGTAAGAGCAAAAAGGACAATTTTATCATTTAATCAGATTTGGAGAAACTGAAAGCTTTGGTGAGTTTGTTTGGGCATTTGTGTATGAGGTTCTAAAGGCCAAGGGGGTTTGAAACAGAAAGGAGTGGATGGACAAAGAGCTGTATGTCTTCTACAAACCTCGCTATCATCAAAAGTAGCAAACCTAGAGGCAAAATCTTAGCATCTCTTTGAAAATTCAATTATTATTCATTGTTATGATTGTTATTTATACGATCGTGATCTTGCTCTTGTTGTATAATTTTAATTTGGCTTTTAGCAATTTAATGATATTTGGTCAAAGAGAGATTTTTGACAAGTTGACCTAGGGATGTTCATTATGGTTAGGCGGATTACATTATCAATGGGAACACCAAGAATGTCATGAGCATGTCGGAACCTGATCTGTTGGAGTTATGGCGTTCTGTATCCAATGGTATGCTAGCAAGTGCAGTAGTACCTTGGTTTTACAAATTAAATCAATAGTTTATCAATGTGAAATGATGATGACTTGATTGCACCTTAGTTTAGCTTCCATAATTTTGCACTTCTAAGTTACTATTGCAATATTATTTTGTAATTTGCAGTTCAATTATTTTTGTGATATAATTAATTTTGCAGCCTTCAATTAA

mRNA sequence

ATGGCGAATATACCAACTGGTGTACTCTTTGACCTTCTATGTGCAGAACCAGAAAGACCATGGAATCTAACGGTACATTTTAGAGGTTATCCAAGACAATTGTTAATTCCTTGTGAAGGTGAAGATAGTATAAAGTGGAGCTTTATTAACTCATTAAAAGAGGCGGATTACATTATCAATGGGAACACCAAGAATGTCATGAGCATGTCGGAACCTGATCTGTTGGAGTTATGGCGTTCTGTATCCAATGCCTTCAATTAA

Coding sequence (CDS)

ATGGCGAATATACCAACTGGTGTACTCTTTGACCTTCTATGTGCAGAACCAGAAAGACCATGGAATCTAACGGTACATTTTAGAGGTTATCCAAGACAATTGTTAATTCCTTGTGAAGGTGAAGATAGTATAAAGTGGAGCTTTATTAACTCATTAAAAGAGGCGGATTACATTATCAATGGGAACACCAAGAATGTCATGAGCATGTCGGAACCTGATCTGTTGGAGTTATGGCGTTCTGTATCCAATGCCTTCAATTAA
Homology
[Close]
BLAST of CSPI03G17940 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.9e-35
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCAEPERPWNLT+HFRGYP  +LIPCEGEDS+KW+F+NSLKEA YIINGN 
Sbjct: 79  IPTGVLFDLLCAEPERPWNLTIHFRGYPCNILIPCEGEDSVKWNFVNSLKEAQYIINGNC 138

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+ D  +LW SV N
Sbjct: 139 KNVMNMSQSDQEDLWTSVMN 158

[Close]
BLAST of CSPI03G17940 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 2.6e-31
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IP GVL+DLLCA+PERPWNLTVHFRGYP ++L PC+GEDS+KWS++NSLKEA +II GN+
Sbjct: 89  IPIGVLYDLLCADPERPWNLTVHFRGYPSEILTPCDGEDSVKWSYMNSLKEAAFIITGNS 148

Query: 64  KNVMSMSEPDLLELWRSV 82
           KNVM+MS+ D   LW+SV
Sbjct: 149 KNVMNMSQADQGALWQSV 166

[Close]
BLAST of CSPI03G17940 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.8e-30
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IP GVL+DLLCA+PERPWNLTVHFRGYP ++L  C+GEDS+KWS++NSLKEA +II GN+
Sbjct: 89  IPIGVLYDLLCADPERPWNLTVHFRGYPSEILTLCDGEDSVKWSYMNSLKEAAFIITGNS 148

Query: 64  KNVMSMSEPDLLELWRSV 82
           KNVM+MS+ D   LW+SV
Sbjct: 149 KNVMNMSQADQGALWQSV 166

[Close]
BLAST of CSPI03G17940 vs. Swiss-Prot
Match: ATG5_PONAB (Autophagy protein 5 OS=Pongo abelii GN=ATG5 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-12
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1 

Query: 5   PTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNTK 64
           P G+LFDLL +    PWN+TVHF+ +P + L+ C  +D+I+  F++ +KEAD  +   ++
Sbjct: 82  PIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEAD-ALKHKSQ 141

Query: 65  NVMSMSEPDLLELWRSVSN 84
            +  M + D  +LW  + N
Sbjct: 142 VINEMQKKDHKQLWMGLQN 159

[Close]
BLAST of CSPI03G17940 vs. Swiss-Prot
Match: ATG5_HUMAN (Autophagy protein 5 OS=Homo sapiens GN=ATG5 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-12
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1 

Query: 5   PTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNTK 64
           P G+LFDLL +    PWN+TVHF+ +P + L+ C  +D+I+  F++ +KEAD  +   ++
Sbjct: 82  PIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEAD-ALKHKSQ 141

Query: 65  NVMSMSEPDLLELWRSVSN 84
            +  M + D  +LW  + N
Sbjct: 142 VINEMQKKDHKQLWMGLQN 159

[Close]
BLAST of CSPI03G17940 vs. TrEMBL
Match: B9SKR7_RICCO (Autophagy protein 5 OS=Ricinus communis GN=RCOM_1604350 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-36
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCA+PERPWNLTVHFRGYP  LLIPCEGEDS+KWSFINSLKEADYIINGN 
Sbjct: 77  IPTGVLFDLLCAQPERPWNLTVHFRGYPNNLLIPCEGEDSVKWSFINSLKEADYIINGNC 136

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+ D +ELWRSV N
Sbjct: 137 KNVMNMSQSDQVELWRSVMN 156

[Close]
BLAST of CSPI03G17940 vs. TrEMBL
Match: M5XBI8_PRUPE (Autophagy protein 5 OS=Prunus persica GN=PRUPE_ppa007660mg PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.6e-35
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCAEPERPWNLTVHF GYP  +LIPCEGEDS+KWSFINSLKEA YIINGN 
Sbjct: 79  IPTGVLFDLLCAEPERPWNLTVHFTGYPGNILIPCEGEDSVKWSFINSLKEAAYIINGNC 138

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+PD +ELWRSV N
Sbjct: 139 KNVMNMSQPDQVELWRSVLN 158

[Close]
BLAST of CSPI03G17940 vs. TrEMBL
Match: V7B8P4_PHAVU (Autophagy protein 5 OS=Phaseolus vulgaris GN=PHAVU_008G241000g PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-34
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLC EPERPWNLTVHFRGYP  +L+PCEGEDS+KWSFINSLKEA Y+INGN+
Sbjct: 78  IPTGVLFDLLCVEPERPWNLTVHFRGYPSNVLLPCEGEDSVKWSFINSLKEAAYVINGNS 137

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+PD +ELW SV N
Sbjct: 138 KNVMNMSQPDQVELWSSVLN 157

[Close]
BLAST of CSPI03G17940 vs. TrEMBL
Match: A0A0K0XQY8_TOBAC (Autophagy protein 5 OS=Nicotiana tabacum GN=ATG5 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-34
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCAEPERPWNLTVHFRGYP  +L PCEGEDS KWSFINSLKEA Y+INGN 
Sbjct: 85  IPTGVLFDLLCAEPERPWNLTVHFRGYPGNILTPCEGEDSAKWSFINSLKEAAYVINGNC 144

Query: 64  KNVMSMSEPDLLELWRSV 82
           KNVM+MS+PD LELWRS+
Sbjct: 145 KNVMNMSQPDQLELWRSI 162

[Close]
BLAST of CSPI03G17940 vs. TrEMBL
Match: A0A0S3RL25_PHAAN (Autophagy protein 5 OS=Vigna angularis var. angularis GN=Vigan.03G099400 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-34
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLC EPERPWNLTVHFRGYP  LL+PCEGEDS+KWSFINSLKEA Y+INGN+
Sbjct: 78  IPTGVLFDLLCVEPERPWNLTVHFRGYPSNLLLPCEGEDSVKWSFINSLKEAAYVINGNS 137

Query: 64  KNVMSMSEPDLLELWRSV 82
           KNVM+MS+PD +ELW SV
Sbjct: 138 KNVMNMSQPDQVELWDSV 155

[Close]
BLAST of CSPI03G17940 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family)

HSP 1 Score: 148.3 bits (373), Expect = 2.2e-36
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCAEPERPWNLT+HFRGYP  +LIPCEGEDS+KW+F+NSLKEA YIINGN 
Sbjct: 79  IPTGVLFDLLCAEPERPWNLTIHFRGYPCNILIPCEGEDSVKWNFVNSLKEAQYIINGNC 138

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+ D  +LW SV N
Sbjct: 139 KNVMNMSQSDQEDLWTSVMN 158

[Close]
BLAST of CSPI03G17940 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-42
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 3   NIPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGN 62
           NIPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGN
Sbjct: 76  NIPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGN 135

Query: 63  TKNVMSMSEPDLLELWRSVSN 84
           TKNVMSMSEPDLLELWRSVSN
Sbjct: 136 TKNVMSMSEPDLLELWRSVSN 156

[Close]
BLAST of CSPI03G17940 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 3.3e-42
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 3   NIPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGN 62
           NIPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYI+NGN
Sbjct: 76  NIPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIVNGN 135

Query: 63  TKNVMSMSEPDLLELWRSVSN 84
           TKNVMSMSEPDLLELWRSVSN
Sbjct: 136 TKNVMSMSEPDLLELWRSVSN 156

[Close]
BLAST of CSPI03G17940 vs. NCBI nr
Match: gi|802613786|ref|XP_012074733.1| (PREDICTED: autophagy protein 5 [Jatropha curcas])

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-36
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCAEPERPWNLTVHFRGYP  LLIPCEGEDS+KWSFINSLKEADYIINGN 
Sbjct: 79  IPTGVLFDLLCAEPERPWNLTVHFRGYPSNLLIPCEGEDSVKWSFINSLKEADYIINGNC 138

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+ D +ELWRSV N
Sbjct: 139 KNVMNMSQSDQVELWRSVIN 158

[Close]
BLAST of CSPI03G17940 vs. NCBI nr
Match: gi|255571273|ref|XP_002526586.1| (PREDICTED: autophagy protein 5 [Ricinus communis])

HSP 1 Score: 158.3 bits (399), Expect = 6.1e-36
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCA+PERPWNLTVHFRGYP  LLIPCEGEDS+KWSFINSLKEADYIINGN 
Sbjct: 77  IPTGVLFDLLCAQPERPWNLTVHFRGYPNNLLIPCEGEDSVKWSFINSLKEADYIINGNC 136

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+ D +ELWRSV N
Sbjct: 137 KNVMNMSQSDQVELWRSVMN 156

[Close]
BLAST of CSPI03G17940 vs. NCBI nr
Match: gi|645223624|ref|XP_008218719.1| (PREDICTED: autophagy protein 5 [Prunus mume])

HSP 1 Score: 155.2 bits (391), Expect = 5.1e-35
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 4   IPTGVLFDLLCAEPERPWNLTVHFRGYPRQLLIPCEGEDSIKWSFINSLKEADYIINGNT 63
           IPTGVLFDLLCAEPERPWNLTVHF GYP  +LIPCEGEDS+KWSFINSLKEA YIINGN 
Sbjct: 79  IPTGVLFDLLCAEPERPWNLTVHFTGYPGNILIPCEGEDSVKWSFINSLKEAAYIINGNC 138

Query: 64  KNVMSMSEPDLLELWRSVSN 84
           KNVM+MS+PD +ELWRSV N
Sbjct: 139 KNVMNMSQPDQVELWRSVLN 158

The following BLAST results are available for this feature:
BLAST of CSPI03G17940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATG5_ARATH3.9e-3578.75Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1[more]
ATG5_ORYSI2.6e-3171.79Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2[more]
ATG5_ORYSJ3.8e-3070.51Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1[more]
ATG5_PONAB8.0e-1236.71Autophagy protein 5 OS=Pongo abelii GN=ATG5 PE=2 SV=1[more]
ATG5_HUMAN8.0e-1236.71Autophagy protein 5 OS=Homo sapiens GN=ATG5 PE=1 SV=2[more]
BLAST of CSPI03G17940 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SKR7_RICCO4.2e-3686.25Autophagy protein 5 OS=Ricinus communis GN=RCOM_1604350 PE=3 SV=1[more]
M5XBI8_PRUPE3.6e-3585.00Autophagy protein 5 OS=Prunus persica GN=PRUPE_ppa007660mg PE=3 SV=1[more]
V7B8P4_PHAVU1.4e-3481.25Autophagy protein 5 OS=Phaseolus vulgaris GN=PHAVU_008G241000g PE=3 SV=1[more]
A0A0K0XQY8_TOBAC1.4e-3484.62Autophagy protein 5 OS=Nicotiana tabacum GN=ATG5 PE=2 SV=1[more]
A0A0S3RL25_PHAAN1.8e-3483.33Autophagy protein 5 OS=Vigna angularis var. angularis GN=Vigan.03G099400 PE=3 SV... [more]
BLAST of CSPI03G17940 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17290.12.2e-3678.75 autophagy protein Apg5 family[more]
BLAST of CSPI03G17940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446111|ref|XP_004140815.1|2.5e-42100.00PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus][more]
gi|659112386|ref|XP_008456193.1|3.3e-4298.77PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo][more]
gi|802613786|ref|XP_012074733.1|4.7e-3687.50PREDICTED: autophagy protein 5 [Jatropha curcas][more]
gi|255571273|ref|XP_002526586.1|6.1e-3686.25PREDICTED: autophagy protein 5 [Ricinus communis][more]
gi|645223624|ref|XP_008218719.1|5.1e-3585.00PREDICTED: autophagy protein 5 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007239Atg5
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0010150 leaf senescence
biological_process GO:0042594 response to starvation
biological_process GO:0006810 transport
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G17940.1CSPI03G17940.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007239Autophagy-related protein 5PANTHERPTHR13040AUTOPHAGY PROTEIN 5coord: 3..83
score: 8.1
IPR007239Autophagy-related protein 5PFAMPF04106APG5coord: 3..83
score: 1.9
NoneNo IPR availablePANTHERPTHR13040:SF2AUTOPHAGY PROTEIN 5coord: 3..83
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G17940Csa3G197930Cucumber (Chinese Long) v2cpicuB120
CSPI03G17940Lsi05G002590Bottle gourd (USVL1VR-Ls)cpilsiB209
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G17940Wax gourdcpiwgoB283
CSPI03G17940Cucumber (Gy14) v1cgycpiB133
CSPI03G17940Cucurbita maxima (Rimu)cmacpiB247
CSPI03G17940Cucurbita maxima (Rimu)cmacpiB461
CSPI03G17940Cucurbita moschata (Rifu)cmocpiB235
CSPI03G17940Cucurbita moschata (Rifu)cmocpiB449
CSPI03G17940Melon (DHL92) v3.5.1cpimeB241
CSPI03G17940Watermelon (Charleston Gray)cpiwcgB237
CSPI03G17940Watermelon (97103) v1cpiwmB242
CSPI03G17940Cucurbita pepo (Zucchini)cpecpiB551
CSPI03G17940Cucurbita pepo (Zucchini)cpecpiB605
CSPI03G17940Melon (DHL92) v3.6.1cpimedB239
CSPI03G17940Cucumber (Gy14) v2cgybcpiB110
CSPI03G17940Silver-seed gourdcarcpiB0203
CSPI03G17940Silver-seed gourdcarcpiB0799
CSPI03G17940Cucumber (Chinese Long) v3cpicucB144
CSPI03G17940Watermelon (97103) v2cpiwmbB221