CSPI02G19160 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G19160
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPolcalcin Jun o 2
LocationChr2 : 17508229 .. 17509172 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGATAGAGATGCTCACAAAAAGACACATTATTTCTTCTACGGCAGAAATGCATGAAGTAAACTTTGGTAAATAAAAACTCCCTCAAAGCATCAATTCCATTTGAGATGATGTGTAATAGATATCATCTCAAAGAGCAAAAAGAAAAAAGAAAAAAAAAAAAAAAACCATCTCCTTGTGTTAGGGTTTTTGTCTTTTACATACCAACTCTATATAAAGACTCCTTCCCCATAGAGAAAAATCTAAGGCAAACAAAAACTATATTATCATCAACACAAAGATATATTATTAGAGCTTACTTCTTGAATATCATTGAAATGGCAATGTCAAGGTCTCAACTGAAGTTGACTAGGGATGAGGTTAGGGAGATCTTAGAAGAGCATGACGTGGACGGTGATGGTAGCCTGACGAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTTCTATGATGTCCTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAGGAGAAGCAGAGATGGAGAATCTTATTGACTATGTCATGAGGTTTCAGACCCCAAGGGCCCCAAAGACCCCAAAGGTCCCTAAGGTGCCAGCCCAAAAGCCTTGCCATGATGGTAAATCAATTGTGTAATAATCTTAGCTTATTTCTATTTATTATGTGTCCGTCTTCAGTCTTCGTCTACATCTTCATCTTGTTTTTCAGTCCATATAGTTTATGTTACAAATTGAGCCATGGCTGTGCTCAAATTGGCAATTATCCACGTATGTTCGTTATCTGCAGTATTGTGTGTCACTGGTAATAAAATTATCTTCTTGTTGTATCCATAAATTATTATATAATAAACATTCCTAAACTATTAAAAATGTCAGATTTTCAATTTCATTTCATGCCATCGTGTGATTTATTATTTAACTTTGCACTATG

mRNA sequence

ATGATGTGTAATAGATATCATCTCAAAGAGCAAAAAGAAAAAAGAAAAAAAAAAAAAAAACCATCTCCTTGTGTTAGGGTTTTTGTCTTTTACATACCAACTCTATATAAAGACTCCTTCCCCATAGAGAAAAATCTAAGGCAAACAAAAACTATATTATCATCAACACAAAGATATATTATTAGAGCTTACTTCTTGAATATCATTGAAATGGCAATGTCAAGGTCTCAACTGAAGTTGACTAGGGATGAGGTTAGGGAGATCTTAGAAGAGCATGACGTGGACGGTGATGGTAGCCTGACGAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTTCTATGATGTCCTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAGGAGAAGCAGAGATGGAGAATCTTATTGACTATGTCATGAGGTTTCAGACCCCAAGGGCCCCAAAGACCCCAAAGGTCCCTAAGGTGCCAGCCCAAAAGCCTTGCCATGATGGTAAATCAATTGTGTAA

Coding sequence (CDS)

ATGATGTGTAATAGATATCATCTCAAAGAGCAAAAAGAAAAAAGAAAAAAAAAAAAAAAACCATCTCCTTGTGTTAGGGTTTTTGTCTTTTACATACCAACTCTATATAAAGACTCCTTCCCCATAGAGAAAAATCTAAGGCAAACAAAAACTATATTATCATCAACACAAAGATATATTATTAGAGCTTACTTCTTGAATATCATTGAAATGGCAATGTCAAGGTCTCAACTGAAGTTGACTAGGGATGAGGTTAGGGAGATCTTAGAAGAGCATGACGTGGACGGTGATGGTAGCCTGACGAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTTCTATGATGTCCTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAGGAGAAGCAGAGATGGAGAATCTTATTGACTATGTCATGAGGTTTCAGACCCCAAGGGCCCCAAAGACCCCAAAGGTCCCTAAGGTGCCAGCCCAAAAGCCTTGCCATGATGGTAAATCAATTGTGTAA
Homology
[Close]
BLAST of CSPI02G19160 vs. TrEMBL
Match: A0A0A0LNG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.5e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 130
           MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 131 DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 181
           DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110

[Close]
BLAST of CSPI02G19160 vs. TrEMBL
Match: A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-30
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 130
           MA SRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG MMSFQKAHYGV+ ADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 131 DGDGKVDLGEAEMENLIDYVMRFQTPR-APKTPKVPKVP 169
           DGDG VDL   E+++L+DYVMRFQ  +  PK      +P
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]
BLAST of CSPI02G19160 vs. TrEMBL
Match: A0A0A0LP50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 130
           M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 131 KDGDGKVDLGEAEMENLIDYVMRFQT 156
           +D DGKVD  + E+E LID V+RFQT
Sbjct: 61  RDDDGKVD--QDELEKLIDCVIRFQT 84

[Close]
BLAST of CSPI02G19160 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 38/87 (43.68%), Postives = 65/87 (74.71%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 130
           M+ + ++L+L+R++++EI  EHD+DGDG L+  E+++A    GS++ F KAHYG++HAD+
Sbjct: 1   MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 131 DGDGKVDLGEAEMENLIDYVMRFQTPR 158
           +GDG ++  E E++ L+DY  +FQ  R
Sbjct: 61  NGDGFIE--EEELDKLVDYAQKFQHKR 85

[Close]
BLAST of CSPI02G19160 vs. TrEMBL
Match: A0A0A0LP46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358880 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 74  SRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADKDGD 133
           S   +KLTR+E++EI    D+DGDG L+K EV+QA   MGS     KAHY ++ AD+DGD
Sbjct: 53  SLQDMKLTREEIKEIFVGFDIDGDGFLSKNEVIQAFGMMGSCSPIMKAHYAMACADEDGD 112

Query: 134 GKVDLGEAEMENLIDYVMR 153
           G++   E E+  LIDYV R
Sbjct: 113 GRI--SEPELNKLIDYVQR 129

[Close]
BLAST of CSPI02G19160 vs. NCBI nr
Match: gi|700207395|gb|KGN62514.1| (hypothetical protein Csa_2G357860 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 130
           MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 131 DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 181
           DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110

[Close]
BLAST of CSPI02G19160 vs. NCBI nr
Match: gi|700207402|gb|KGN62521.1| (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.7e-30
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 130
           MA SRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG MMSFQKAHYGV+ ADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 131 DGDGKVDLGEAEMENLIDYVMRFQTPR-APKTPKVPKVP 169
           DGDG VDL   E+++L+DYVMRFQ  +  PK      +P
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]
BLAST of CSPI02G19160 vs. NCBI nr
Match: gi|700207403|gb|KGN62522.1| (hypothetical protein Csa_2G359910 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 130
           M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 131 KDGDGKVDLGEAEMENLIDYVMRFQT 156
           +D DGKVD  + E+E LID V+RFQT
Sbjct: 61  RDDDGKVD--QDELEKLIDCVIRFQT 84

[Close]
BLAST of CSPI02G19160 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 38/90 (42.22%), Postives = 67/90 (74.44%), Query Frame = 1 

Query: 68  IIEMAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSH 127
           +++ A+  ++L+L+R++++EI  EHD+DGDG L+  E+++A    GS++ F KAHYG++H
Sbjct: 79  VVDYAIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAH 138

Query: 128 ADKDGDGKVDLGEAEMENLIDYVMRFQTPR 158
           AD++GDG ++  E E++ L+DY  +FQ  R
Sbjct: 139 ADENGDGFIE--EEELDKLVDYAQKFQHKR 166

[Close]
BLAST of CSPI02G19160 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 38/87 (43.68%), Postives = 65/87 (74.71%), Query Frame = 1 

Query: 71  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 130
           M+ + ++L+L+R++++EI  EHD+DGDG L+  E+++A    GS++ F KAHYG++HAD+
Sbjct: 1   MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 131 DGDGKVDLGEAEMENLIDYVMRFQTPR 158
           +GDG ++  E E++ L+DY  +FQ  R
Sbjct: 61  NGDGFIE--EEELDKLVDYAQKFQHKR 85

The following BLAST results are available for this feature:
BLAST of CSPI02G19160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G19160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNG3_CUCSA8.5e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1[more]
A0A0A0LRC3_CUCSA1.9e-3074.75Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1[more]
A0A0A0LP50_CUCSA2.2e-1860.47Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA8.6e-1543.68Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
A0A0A0LP46_CUCSA3.0e-1250.63Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358880 PE=4 SV=1[more]
BLAST of CSPI02G19160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G19160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207395|gb|KGN62514.1|1.2e-54100.00hypothetical protein Csa_2G357860 [Cucumis sativus][more]
gi|700207402|gb|KGN62521.1|2.7e-3074.75hypothetical protein Csa_2G359900 [Cucumis sativus][more]
gi|700207403|gb|KGN62522.1|3.1e-1860.47hypothetical protein Csa_2G359910 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|3.2e-1542.22PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|700207397|gb|KGN62516.1|1.2e-1443.68hypothetical protein Csa_2G358870 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G19160.1CSPI02G19160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 84..113
score: 1.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 84..112
score: 8.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 80..115
score: 13.342coord: 116..153
score: 5
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 104..140
score: 4.4E-8coord: 59..103
score: 1.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 65..140
score: 6.56
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 93..105
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G19160Cla022568Watermelon (97103) v1cpiwmB116
CSPI02G19160Csa2G357860Cucumber (Chinese Long) v2cpicuB065
CSPI02G19160MELO3C010866Melon (DHL92) v3.5.1cpimeB118
CSPI02G19160ClCG08G015880Watermelon (Charleston Gray)cpiwcgB172
CSPI02G19160CsaV3_2G027860Cucumber (Chinese Long) v3cpicucB081
CSPI02G19160CmaCh12G005380Cucurbita maxima (Rimu)cmacpiB175
CSPI02G19160CmoCh12G004820Cucurbita moschata (Rifu)cmocpiB160
CSPI02G19160Cp4.1LG11g01530Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G19160CsGy2G019080Cucumber (Gy14) v2cgybcpiB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G19160Cucumber (Chinese Long) v3cpicucB103
CSPI02G19160Watermelon (97103) v2cpiwmbB137
CSPI02G19160Watermelon (97103) v2cpiwmbB166
CSPI02G19160Wax gourdcpiwgoB159
CSPI02G19160Wax gourdcpiwgoB198
CSPI02G19160Wild cucumber (PI 183967)cpicpiB074
CSPI02G19160Wild cucumber (PI 183967)cpicpiB091
CSPI02G19160Cucumber (Gy14) v1cgycpiB331
CSPI02G19160Cucumber (Gy14) v1cgycpiB341
CSPI02G19160Cucurbita maxima (Rimu)cmacpiB011
CSPI02G19160Cucurbita maxima (Rimu)cmacpiB439
CSPI02G19160Cucurbita maxima (Rimu)cmacpiB513
CSPI02G19160Cucurbita maxima (Rimu)cmacpiB793
CSPI02G19160Cucurbita moschata (Rifu)cmocpiB002
CSPI02G19160Cucurbita moschata (Rifu)cmocpiB428
CSPI02G19160Cucurbita moschata (Rifu)cmocpiB782
CSPI02G19160Cucumber (Chinese Long) v2cpicuB080
CSPI02G19160Cucumber (Chinese Long) v2cpicuB096
CSPI02G19160Melon (DHL92) v3.5.1cpimeB105
CSPI02G19160Melon (DHL92) v3.5.1cpimeB148
CSPI02G19160Watermelon (Charleston Gray)cpiwcgB136
CSPI02G19160Watermelon (Charleston Gray)cpiwcgB144
CSPI02G19160Watermelon (97103) v1cpiwmB129
CSPI02G19160Watermelon (97103) v1cpiwmB153
CSPI02G19160Cucurbita pepo (Zucchini)cpecpiB541
CSPI02G19160Cucurbita pepo (Zucchini)cpecpiB773
CSPI02G19160Cucurbita pepo (Zucchini)cpecpiB820
CSPI02G19160Bottle gourd (USVL1VR-Ls)cpilsiB114
CSPI02G19160Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G19160Melon (DHL92) v3.6.1cpimedB100
CSPI02G19160Melon (DHL92) v3.6.1cpimedB114
CSPI02G19160Melon (DHL92) v3.6.1cpimedB142
CSPI02G19160Cucumber (Gy14) v2cgybcpiB163
CSPI02G19160Cucumber (Gy14) v2cgybcpiB305
CSPI02G19160Silver-seed gourdcarcpiB0209
CSPI02G19160Silver-seed gourdcarcpiB0806