CSPI02G16620 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G16620
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Myb transcription factor
Location	Chr2 : 15981553 .. 15982852 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGATCTCCTTGCTGTGAGAAACAACACACCAACAAAGGTGCATGGACCAAAGAAGAAGATCAACGCCTTATTAATTACATCCAAATCCATGGCGATGGTTGTTGGAGATCTCTCCCTAAAGCTGCTGGTACGTACCATCGCCACACAACATATTCAAACTACTTCTTGTAACAGCTTCTTCGATCTTCATATATATATGTATTTATGTATGTTCATCGTCATTTAATTTCTTAATTAATTATAATACTATTAGGGTTGCTTCGGTGTGGTAAAAGTTGTCGACTACGATGGATCAATTATCTTCGTCCCGATCTCAAGAGAGGAAACTTCACTGCTGAGGAAGACCAAATTATCATCAATCTCCATACCCTACTTGGCAATAAGTAAGTATCAATTTCTAATTCCCTACTAAAGTATACTTGGGTGGGTGATCCCATCTCCACATCACACTTTTACATAAAACAAATAATTATAACATTTCATTAAAAAAACAAAATGAATTTGCAAACTTTGATTAGACTTGGAACAAACGAAGATAGGTGATATGTTTAATCATGATGTATTACGAATTTTATATATGTAAGACCAAGTCTTTTTCTCTAAAAAAAAACTATTAAACACATCTTGAACCATTGTTTAAATTAGAATCTAGTTTCTAATTACTTTCTAAATTTGCTATAAAAAACACATACATATGAAACATAAATATGATCTATTTTCATCCCGTCCCTTGTTTTCATATTGTCTACCTGCTAAACTAATGTGATGAGAATTTATAATATGACTAACAGGTGGTCTTTAATTGCCGCACGATTACCTGGAAGGACGGATAACGAGATAAAAAACTACTGGAACACGCATATCAAACGAAAACTCTATAGTCGAGGAATCGATCCTCAAACGCATCGTCCATTGGCCAATAACAGTAGTAGCAGTACTGGCGACTTTGACCGGCGACGGGAAGATTCAAACAGCAACAGCAGCAGCAACAGTTGTTTGACAACGGAGGTGGAAGAAAACCCACCATTGAATCTAAACCTAGAGCTCTCCATCGGCCTTCATCCCCACAACCAAATTACCAAAAACACCAATCCAAAAGGGGATGATCATCAAGAGGCTCCCGTTTTATTCAAATTTTGTTCACCACAAACAGAATTAGAAACTCAAAATTTCTCCTCCACCCCTCATATGTTTAGATATTACACACCATCCCCTTCTTAGTATTTTAATTTTCATACATATATATACCAACATTGTGATCTCACTTTTTTGCATTTTCTCAACTTTTCTTCAC

mRNA sequence

ATGGGAAGATCTCCTTGCTGTGAGAAACAACACACCAACAAAGGTGCATGGACCAAAGAAGAAGATCAACGCCTTATTAATTACATCCAAATCCATGGCGATGGTTGTTGGAGATCTCTCCCTAAAGCTGCTGGGTTGCTTCGGTGTGGTAAAAGTTGTCGACTACGATGGATCAATTATCTTCGTCCCGATCTCAAGAGAGGAAACTTCACTGCTGAGGAAGACCAAATTATCATCAATCTCCATACCCTACTTGGCAATAAGTGGTCTTTAATTGCCGCACGATTACCTGGAAGGACGGATAACGAGATAAAAAACTACTGGAACACGCATATCAAACGAAAACTCTATAGTCGAGGAATCGATCCTCAAACGCATCGTCCATTGGCCAATAACAGTAGTAGCAGTACTGGCGACTTTGACCGGCGACGGGAAGATTCAAACAGCAACAGCAGCAGCAACAGTTGTTTGACAACGGAGGTGGAAGAAAACCCACCATTGAATCTAAACCTAGAGCTCTCCATCGGCCTTCATCCCCACAACCAAATTACCAAAAACACCAATCCAAAAGGGGATGATCATCAAGAGGCTCCCGTTTTATTCAAATTTTGTTCACCACAAACAGAATTAGAAACTCAAAATTTCTCCTCCACCCCTCATATGTTTAGATATTACACACCATCCCCTTCTTAG

Coding sequence (CDS)

ATGGGAAGATCTCCTTGCTGTGAGAAACAACACACCAACAAAGGTGCATGGACCAAAGAAGAAGATCAACGCCTTATTAATTACATCCAAATCCATGGCGATGGTTGTTGGAGATCTCTCCCTAAAGCTGCTGGGTTGCTTCGGTGTGGTAAAAGTTGTCGACTACGATGGATCAATTATCTTCGTCCCGATCTCAAGAGAGGAAACTTCACTGCTGAGGAAGACCAAATTATCATCAATCTCCATACCCTACTTGGCAATAAGTGGTCTTTAATTGCCGCACGATTACCTGGAAGGACGGATAACGAGATAAAAAACTACTGGAACACGCATATCAAACGAAAACTCTATAGTCGAGGAATCGATCCTCAAACGCATCGTCCATTGGCCAATAACAGTAGTAGCAGTACTGGCGACTTTGACCGGCGACGGGAAGATTCAAACAGCAACAGCAGCAGCAACAGTTGTTTGACAACGGAGGTGGAAGAAAACCCACCATTGAATCTAAACCTAGAGCTCTCCATCGGCCTTCATCCCCACAACCAAATTACCAAAAACACCAATCCAAAAGGGGATGATCATCAAGAGGCTCCCGTTTTATTCAAATTTTGTTCACCACAAACAGAATTAGAAACTCAAAATTTCTCCTCCACCCCTCATATGTTTAGATATTACACACCATCCCCTTCTTAG

Homology

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BLAST of CSPI02G16620 vs. Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.5e-69
Identity = 127/171 (74.27%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEEDQRLINYI+ HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED+III LH+LLGNKWSLIA  LPGRTDNEIKNYWNTHIKRKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRG 120

Query: 121 IDPQTHRPLANNSSSSTGD-------FDRRREDSNSNSSSNSCLTTEVEEN 165
           IDPQTHR L + ++++T          D R   SN   S N C+ T    N
Sbjct: 121 IDPQTHRSLNSATTTATATPTVNNSCLDFRTSPSN---SKNICMPTTDNNN 168

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BLAST of CSPI02G16620 vs. Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.6e-67
Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RL+ YI+ HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++II LH+LLGNKWSLIA RLPGRTDNEIKNYWNTHI+RKL +RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 121 IDPQTHRPLANNSSS 136
           IDP +HRP+  +S+S
Sbjct: 121 IDPTSHRPIQESSAS 135

[Close]

BLAST of CSPI02G16620 vs. Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-66
Identity = 128/205 (62.44%), Postives = 149/205 (72.68%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED RL+ YI+ HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++II LH+LLGNKWSLIA RLPGRTDNEIKNYWNTHI+RKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 121 IDPQTHRPLANNSSS-------STGDFDRRREDSNSNSSSNSCLTTE----VEENPPLNL 180
           IDP THR + + ++S       S  + + + ED+    + +  +  E     E  P LNL
Sbjct: 121 IDPTTHRSINDGTASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPVQERCPDLNL 180

Query: 181 NLELS------IGLHPHNQITKNTN 189
           +L++S      I  H  N  T   N
Sbjct: 181 DLKISPPCQQQINYHQENLKTGGRN 205

[Close]

BLAST of CSPI02G16620 vs. Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-66
Identity = 118/175 (67.43%), Postives = 141/175 (80.57%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTN+GAWTKEED+RL+ YI+ HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTA+ED +I+ LH+LLGNKWSLIAARLPGRTDNEIKNYWNTH++RKL  RG
Sbjct: 61  LRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRG 120

Query: 121 IDPQTHRPLANNS-SSSTGDFDRRREDSNSNSSSNSCLTTEVEENPPLNLNLELS 175
           IDP THRP+A ++ + +T  F      + + ++       +    P LNL+L +S
Sbjct: 121 IDPVTHRPIAADAVTVTTVSFQPSPSAAAAAAAEAEATAAKAPRCPDLNLDLCIS 175

[Close]

BLAST of CSPI02G16620 vs. Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66
Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEEDQRL++YI+ HG+GCWRSLPK+AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT +EDQIII LH+LLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL S G
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 121 IDPQTHRPLANNSSSSTGDFDRRREDSNSNSSSNSCLTTEVEEN 165
           IDPQTHR +  + + S+      + D+   S SN  +  + E +
Sbjct: 121 IDPQTHRQINESKTVSSQVVVPIQNDAVEYSFSNLAVKPKTENS 164

[Close]

BLAST of CSPI02G16620 vs. TrEMBL
Match: I1KBT0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G160500 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-72
Identity = 144/228 (63.16%), Postives = 170/228 (74.56%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEED+RLINYI++HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++IINLH+LLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLANNSSSST------------GDFDRRREDSNSN------------------ 180
           IDPQTHRPL  N++S+T             +  ++ +++N+N                  
Sbjct: 121 IDPQTHRPL--NAASATPATTVTATAVPSSNSKKKIKNNNNNNNGFQLVNNSAYANTKIG 180

Query: 181 --------SSSNSCLTTEVEENPPLNLNLELSIGLHPHNQITKNTNPK 191
                   S+S+S +TTE E  P   LNL+LSIGL    Q++ + NP+
Sbjct: 181 TDMIAAEDSNSSSGVTTE-ESFPHHQLNLDLSIGLPSQPQVSSSLNPE 225

[Close]

BLAST of CSPI02G16620 vs. TrEMBL
Match: A0A0B2PQ10_GLYSO (Myb-related protein 308 OS=Glycine soja GN=glysoja_011951 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-72
Identity = 144/228 (63.16%), Postives = 170/228 (74.56%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEED+RLINYI++HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++IINLH+LLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLANNSSSST------------GDFDRRREDSNSN------------------ 180
           IDPQTHRPL  N++S+T             +  ++ +++N+N                  
Sbjct: 121 IDPQTHRPL--NAASATPATTVTATAVPSSNSKKKIKNNNNNNNGFQLVNNSAYANTKIG 180

Query: 181 --------SSSNSCLTTEVEENPPLNLNLELSIGLHPHNQITKNTNPK 191
                   S+S+S +TTE E  P   LNL+LSIGL    Q++ + NP+
Sbjct: 181 TDMIAAEDSNSSSGVTTE-ESFPHHQLNLDLSIGLPSQPQVSSSLNPE 225

[Close]

BLAST of CSPI02G16620 vs. TrEMBL
Match: A0A110AEP1_TRIRP (MYB7 OS=Trifolium repens GN=MYB7 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.3e-71
Identity = 121/137 (88.32%), Postives = 134/137 (97.81%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEED+RLINYI++HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT +ED +IINLHTLLGNKWSLIAA+LPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEQEDDLIINLHTLLGNKWSLIAAKLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLANNSSSST 138
           +DPQTHRPL N+++S+T
Sbjct: 121 VDPQTHRPLNNSATSTT 137

[Close]

BLAST of CSPI02G16620 vs. TrEMBL
Match: A0A151TR11_CAJCA (Myb-related protein 330 family OS=Cajanus cajan GN=KK1_008683 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.2e-71
Identity = 148/250 (59.20%), Postives = 174/250 (69.60%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEEDQRLINYI++HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDQRLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT +ED++IINLH+LLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEDEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPL----------------ANNSSSSTGDFDRRREDSNSN-------------- 180
           IDPQTHRPL                   SS++  D D    ++N+N              
Sbjct: 121 IDPQTHRPLNASASPAATAAVVPVVTVTSSNNKNDQDSSSSNNNNNNNNGFQLVSSGYVN 180

Query: 181 -----------SSSNSCLTTEVEENPPLNLNLELSIGL--HPH---NQITKNTNPKGDDH 204
                      S+S+S +TTE E  P   LNL+LSIGL   PH    ++ +    +  +H
Sbjct: 181 AKIGSDLVGEDSNSSSGVTTE-EALPHHQLNLDLSIGLPSQPHVNTEKLKQQMQTQPHEH 240

[Close]

BLAST of CSPI02G16620 vs. TrEMBL
Match: A0A067JT70_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_02792 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.2e-71
Identity = 127/176 (72.16%), Postives = 149/176 (84.66%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEED+RL+NYI+ HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLVNYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++IINLH+LLG KWSLIAARLPGRTDNEIKNYWNTHI+RKLYSRG
Sbjct: 61  LRPDLKRGNFTEEEDELIINLHSLLGTKWSLIAARLPGRTDNEIKNYWNTHIRRKLYSRG 120

Query: 121 IDPQTHRPLANNSSSST---------GDFDRRREDSNSNSSSNSCLTTEVEENPPL 168
           IDPQTHRPL + ++++T            D +  ++N+N S N+C++    +N PL
Sbjct: 121 IDPQTHRPLNSTATAATTTAASAALSNSRDNKDNNNNNNISGNNCVSKIETQNSPL 176

[Close]

BLAST of CSPI02G16620 vs. TAIR10
Match: AT4G38620.1 (AT4G38620.1 myb domain protein 4)

HSP 1 Score: 257.3 bits (656), Expect = 9.0e-69
Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED+RL+ YI+ HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++II LH+LLGNKWSLIA RLPGRTDNEIKNYWNTHI+RKL +RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 121 IDPQTHRPLANNSSS 136
           IDP +HRP+  +S+S
Sbjct: 121 IDPTSHRPIQESSAS 135

[Close]

BLAST of CSPI02G16620 vs. TAIR10
Match: AT4G09460.1 (AT4G09460.1 myb domain protein 6)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-67
Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEEDQRL++YI+ HG+GCWRSLPK+AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT +EDQIII LH+LLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL S G
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 121 IDPQTHRPLANNSSSSTGDFDRRREDSNSNSSSNSCLTTEVEEN 165
           IDPQTHR +  + + S+      + D+   S SN  +  + E +
Sbjct: 121 IDPQTHRQINESKTVSSQVVVPIQNDAVEYSFSNLAVKPKTENS 164

[Close]

BLAST of CSPI02G16620 vs. TAIR10
Match: AT4G34990.1 (AT4G34990.1 myb domain protein 32)

HSP 1 Score: 250.8 bits (639), Expect = 8.4e-67
Identity = 110/146 (75.34%), Postives = 123/146 (84.25%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK HTNKGAWTKEED +LI+YI+ HG+GCWRSLP++AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED +II LH+LLGNKWSLIA RLPGRTDNEIKNYWNTH+KRKL  +G
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 121 IDPQTHRPLANNSSSSTGDFDRRRED 147
           IDP THRP+    +S       + ED
Sbjct: 121 IDPATHRPINETKTSQDSSDSSKTED 146

[Close]

BLAST of CSPI02G16620 vs. TAIR10
Match: AT2G16720.1 (AT2G16720.1 myb domain protein 7)

HSP 1 Score: 246.5 bits (628), Expect = 1.6e-65
Identity = 133/239 (55.65%), Postives = 159/239 (66.53%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+H NKGAWTKEED+RL++YI+ HG+GCWRSLP+AAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT +ED++II LH+LLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL S+G
Sbjct: 61  LRPDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKG 120

Query: 121 IDPQTHRPLANNSSSST-----------------GDFDRRREDSNSNSSSNSCLTTE--- 180
           IDP THR +     S                    + D+  +   +    N  +  E   
Sbjct: 121 IDPATHRGINEAKISDLKKTKDQIVKDVSFVTKFEETDKSGDQKQNKYIRNGLVCKEERV 180

Query: 181 -VEENPPLNLNLELSIGLHPHNQITKNTNPKGDDHQEAPVLFKFCSPQT-ELETQNFSS 218
            VEE    +LNLEL I     NQ   +T      + E  +    CS +T + +T+N SS
Sbjct: 181 VVEEKIGPDLNLELRISPPWQNQREISTCTASRFYMENDM---ECSSETVKCQTENSSS 236

[Close]

BLAST of CSPI02G16620 vs. TAIR10
Match: AT1G22640.1 (AT1G22640.1 myb domain protein 3)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-65
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK H NKGAWTKEEDQ L++YI+ HG+GCWRSLP+AAGL RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++II LH+LLGNKWSLIA RLPGRTDNEIKNYWNTHIKRKL SRG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 121 IDPQTHRPLANNS 134
           IDP +HR L N S
Sbjct: 121 IDPNSHR-LINES 132

[Close]

BLAST of CSPI02G16620 vs. NCBI nr
Match: gi|778670368|ref|XP_004147356.2| (PREDICTED: myb-related protein 330-like [Cucumis sativus])

HSP 1 Score: 485.3 bits (1248), Expect = 5.8e-134
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLANNSSSSTGDFDRRREDSNSNSSSNSCLTTEVEENPPLNLNLELSIGLHPH 180
           IDPQTHRPLANNSSSSTGDFDRRREDSNSNSSSNSCLTTEVEENPP NLNLELSIGLHPH
Sbjct: 121 IDPQTHRPLANNSSSSTGDFDRRREDSNSNSSSNSCLTTEVEENPPSNLNLELSIGLHPH 180

Query: 181 NQITKNTNPKGDDHQEAPVLFKFCSPQTELETQNFSSTPHMFRYYTPSPS 231
           NQITKNTNPKGDDHQEAPVLFKFCSPQTELETQNFSSTPHMFRYYTPSPS
Sbjct: 181 NQITKNTNPKGDDHQEAPVLFKFCSPQTELETQNFSSTPHMFRYYTPSPS 230

[Close]

BLAST of CSPI02G16620 vs. NCBI nr
Match: gi|659121837|ref|XP_008460839.1| (PREDICTED: myb-related protein 330-like [Cucumis melo])

HSP 1 Score: 468.8 bits (1205), Expect = 5.6e-129
Identity = 222/230 (96.52%), Postives = 226/230 (98.26%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYS+G
Sbjct: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSQG 120

Query: 121 IDPQTHRPLANNSSSSTGDFDRRREDSNSNSSSNSCLTTEVEENPPLNLNLELSIGLHPH 180
           IDPQTHRPLANN SS T DFDRRREDSNSNSSSNSCLTTEVEENPPLNLNLELSIGLHPH
Sbjct: 121 IDPQTHRPLANNRSS-TSDFDRRREDSNSNSSSNSCLTTEVEENPPLNLNLELSIGLHPH 180

Query: 181 NQITKNTNPKGDDHQEAPVLFKFCSPQTELETQNFSSTPHMFRYYTPSPS 231
           NQITKN NPKGDDHQ+APVLFKFCSPQTELETQ+FSSTPH+FRYYTPSPS
Sbjct: 181 NQITKNPNPKGDDHQKAPVLFKFCSPQTELETQHFSSTPHIFRYYTPSPS 229

[Close]

BLAST of CSPI02G16620 vs. NCBI nr
Match: gi|296084807|emb|CBI27689.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 283.1 bits (723), Expect = 4.3e-73
Identity = 143/218 (65.60%), Postives = 161/218 (73.85%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEEDQRLI YI+ HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++IINLH+  GNKWSLIA RLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTDEEDELIINLHSFFGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLAN-NSSSSTGDFDRRREDSNSNSSSNSCLTTEVEENPPLN----------- 180
           IDPQTHRPL++  S+++T       + SNS S + S   +E  + PP +           
Sbjct: 121 IDPQTHRPLSSAASTAATSATINNSKRSNSTSKNTSNSESEAAKTPPYSNSSSGVTTEEL 180

Query: 181 ---LNLELSIGL--HPHNQITKNTNPKGDDHQEAPVLF 202
              LNLELSIGL   P  Q T    PK    ++ P  F
Sbjct: 181 YPQLNLELSIGLPHRPQIQATNVKEPKKQPQEQLPFQF 218

[Close]

BLAST of CSPI02G16620 vs. NCBI nr
Match: gi|734341039|gb|KHN09677.1| (Myb-related protein 308 [Glycine soja])

HSP 1 Score: 280.4 bits (716), Expect = 2.8e-72
Identity = 144/228 (63.16%), Postives = 170/228 (74.56%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEED+RLINYI++HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT EED++IINLH+LLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLANNSSSST------------GDFDRRREDSNSN------------------ 180
           IDPQTHRPL  N++S+T             +  ++ +++N+N                  
Sbjct: 121 IDPQTHRPL--NAASATPATTVTATAVPSSNSKKKIKNNNNNNNGFQLVNNSAYANTKIG 180

Query: 181 --------SSSNSCLTTEVEENPPLNLNLELSIGLHPHNQITKNTNPK 191
                   S+S+S +TTE E  P   LNL+LSIGL    Q++ + NP+
Sbjct: 181 TDMIAAEDSNSSSGVTTE-ESFPHHQLNLDLSIGLPSQPQVSSSLNPE 225

[Close]

BLAST of CSPI02G16620 vs. NCBI nr
Match: gi|983411272|gb|AMB27080.1| (MYB7 [Trifolium repens])

HSP 1 Score: 277.7 bits (709), Expect = 1.8e-71
Identity = 121/137 (88.32%), Postives = 134/137 (97.81%), Query Frame = 1


Query: 1   MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLLRCGKSCRLRWINY 60
           MGRSPCCEK+HTNKGAWTKEED+RLINYI++HG+GCWRSLPKAAGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGNFTAEEDQIIINLHTLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120
           LRPDLKRGNFT +ED +IINLHTLLGNKWSLIAA+LPGRTDNEIKNYWNTHIKRKLYSRG
Sbjct: 61  LRPDLKRGNFTEQEDDLIINLHTLLGNKWSLIAAKLPGRTDNEIKNYWNTHIKRKLYSRG 120

Query: 121 IDPQTHRPLANNSSSST 138
           +DPQTHRPL N+++S+T
Sbjct: 121 VDPQTHRPLNNSATSTT 137

The following BLAST results are available for this feature:

BLAST of CSPI02G16620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB30_ANTMA	6.5e-69	74.27	Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1	[more]
MYB4_ARATH	1.6e-67	82.96	Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1	[more]
MYB08_ANTMA	1.8e-66	62.44	Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1	[more]
MYB38_MAIZE	2.3e-66	67.43	Myb-related protein Zm38 OS=Zea mays PE=2 SV=1	[more]
MYB6_ARATH	3.0e-66	72.56	Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1	[more]

BLAST of CSPI02G16620 vs. TrEMBL


Match Name	E-value	Identity	Description
I1KBT0_SOYBN	2.0e-72	63.16	Uncharacterized protein OS=Glycine max GN=GLYMA_06G160500 PE=4 SV=1	[more]
A0A0B2PQ10_GLYSO	2.0e-72	63.16	Myb-related protein 308 OS=Glycine soja GN=glysoja_011951 PE=4 SV=1	[more]
A0A110AEP1_TRIRP	1.3e-71	88.32	MYB7 OS=Trifolium repens GN=MYB7 PE=2 SV=1	[more]
A0A151TR11_CAJCA	2.2e-71	59.20	Myb-related protein 330 family OS=Cajanus cajan GN=KK1_008683 PE=4 SV=1	[more]
A0A067JT70_JATCU	2.2e-71	72.16	MYB family protein OS=Jatropha curcas GN=JCGZ_02792 PE=4 SV=1	[more]

BLAST of CSPI02G16620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38620.1	9.0e-69	82.96	myb domain protein 4	[more]
AT4G09460.1	1.7e-67	72.56	myb domain protein 6	[more]
AT4G34990.1	8.4e-67	75.34	myb domain protein 32	[more]
AT2G16720.1	1.6e-65	55.65	myb domain protein 7	[more]
AT1G22640.1	2.1e-65	82.71	myb domain protein 3	[more]

BLAST of CSPI02G16620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670368\|ref\|XP_004147356.2\|	5.8e-134	99.57	PREDICTED: myb-related protein 330-like [Cucumis sativus]	[more]
gi\|659121837\|ref\|XP_008460839.1\|	5.6e-129	96.52	PREDICTED: myb-related protein 330-like [Cucumis melo]	[more]
gi\|296084807\|emb\|CBI27689.3\|	4.3e-73	65.60	unnamed protein product [Vitis vinifera]	[more]
gi\|734341039\|gb\|KHN09677.1\|	2.8e-72	63.16	Myb-related protein 308 [Glycine soja]	[more]
gi\|983411272\|gb\|AMB27080.1\|	1.8e-71	88.32	MYB7 [Trifolium repens]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G16620.1	CSPI02G16620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 67..111 score: 1.3E-16coord: 14..61 score: 5.2
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..63 score: 1.5E-13coord: 66..114 score: 3.1
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 5..64 score: 3.2E-24coord: 65..116 score: 1.1
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 12..108 score: 7.91
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 62..116 score: 28.38coord: 9..61 score: 16
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..131 score: 2.9E-115coord: 190..199 score: 2.9E
None	No IPR available	PANTHER	PTHR10641:SF643	MYB TRANSCRIPTION FACTOR-RELATED	coord: 190..199 score: 2.9E-115coord: 1..131 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G16620	Cla007846	Watermelon (97103) v1	cpiwmB152
CSPI02G16620	MELO3C023204	Melon (DHL92) v3.5.1	cpimeB094
CSPI02G16620	ClCG02G000140	Watermelon (Charleston Gray)	cpiwcgB126
CSPI02G16620	Lsi10G007760	Bottle gourd (USVL1VR-Ls)	cpilsiB095
CSPI02G16620	MELO3C023204.2	Melon (DHL92) v3.6.1	cpimedB085
CSPI02G16620	CsaV3_2G019820	Cucumber (Chinese Long) v3	cpicucB082
CSPI02G16620	Cla97C02G026370	Watermelon (97103) v2	cpiwmbB119
CSPI02G16620	Bhi10G001380	Wax gourd	cpiwgoB183
CSPI02G16620	Cucsa.228000	Cucumber (Gy14) v1	cgycpiB339
CSPI02G16620	CsGy2G016190	Cucumber (Gy14) v2	cgybcpiB058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G16620	Cucumber (Chinese Long) v2	cpicuB065