CSPI02G13560 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G13560
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 13551270 .. 13551723 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAGTTTGGACGACGAACCGCTACAAGTTTTAGGTACAACCCATTTGTCGGTTTGCATTTATCTTCTACTTTATTTTGAGTATTATATTTGAAATTATTGTTCTAATTTCTCATTTGGGTTTTTTTTTTTTTTTTTTTCCCTTTCTCTAAAAGAAAAAAGTGGTGGGGTTTTGATTTTCTGTTTAATGGTTTGCTTTTCTGGATGCGTTAATGGGTTGTTGTTGTTGTTGTTGCTGCTTGTTTTTAAATACTTGTAGTTAAATACTGGTTCTGTCTTTCTTTCTTTTATGGGTGGAATAAGGTTTCTGAATCGTTTGTTGGTTGATTTTGGTAGTAGAGAGTGAAATGGTGGAGGGTTTTAAAAGTGGGGAGTCTCTTAATCAGAGGTTACCTGCTGAAGCCCCGGAAATTGAAGAAGATTCAAAATCTGTGGGTTTTGGGGGATTATAG

mRNA sequence

ATGCTGAGTTTGGACGACGAACCGCTACAAGTTTTAGTAGAGAGTGAAATGGTGGAGGGTTTTAAAAGTGGGGAGTCTCTTAATCAGAGGTTACCTGCTGAAGCCCCGGAAATTGAAGAAGATTCAAAATCTGTGGGTTTTGGGGGATTATAG

Coding sequence (CDS)

ATGCTGAGTTTGGACGACGAACCGCTACAAGTTTTAGTAGAGAGTGAAATGGTGGAGGGTTTTAAAAGTGGGGAGTCTCTTAATCAGAGGTTACCTGCTGAAGCCCCGGAAATTGAAGAAGATTCAAAATCTGTGGGTTTTGGGGGATTATAG
Homology
[Close]
BLAST of CSPI02G13560 vs. TrEMBL
Match: A0A0A0LLN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270760 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

Query: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 51
          MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL
Sbjct: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 50

[Close]
BLAST of CSPI02G13560 vs. NCBI nr
Match: gi|700206815|gb|KGN61934.1| (hypothetical protein Csa_2G270760 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

Query: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 51
          MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL
Sbjct: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 50

The following BLAST results are available for this feature:
BLAST of CSPI02G13560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G13560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLN3_CUCSA1.4e-18100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270760 PE=4 SV=1[more]
BLAST of CSPI02G13560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G13560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206815|gb|KGN61934.1|2.0e-18100.00hypothetical protein Csa_2G270760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G13560.1CSPI02G13560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G13560Csa2G270760Cucumber (Chinese Long) v2cpicuB065
CSPI02G13560CsaV3_2G016080Cucumber (Chinese Long) v3cpicucB080
CSPI02G13560Cla97C02G037540Watermelon (97103) v2cpiwmbB117
CSPI02G13560Carg05176Silver-seed gourdcarcpiB0838
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G13560Melon (DHL92) v3.6.1cpimedB089
CSPI02G13560Melon (DHL92) v3.6.1cpimedB098
CSPI02G13560Cucumber (Gy14) v2cgybcpiB056
CSPI02G13560Cucumber (Gy14) v2cgybcpiB303
CSPI02G13560Silver-seed gourdcarcpiB0347
CSPI02G13560Silver-seed gourdcarcpiB0380
CSPI02G13560Silver-seed gourdcarcpiB0440
CSPI02G13560Silver-seed gourdcarcpiB1051
CSPI02G13560Cucumber (Chinese Long) v3cpicucB117
CSPI02G13560Watermelon (97103) v2cpiwmbB099
CSPI02G13560Watermelon (97103) v2cpiwmbB127
CSPI02G13560Wax gourdcpiwgoB151
CSPI02G13560Wax gourdcpiwgoB181
CSPI02G13560Wild cucumber (PI 183967)cpicpiB080
CSPI02G13560Wild cucumber (PI 183967)cpicpiB089
CSPI02G13560Cucumber (Gy14) v1cgycpiB023
CSPI02G13560Cucumber (Gy14) v1cgycpiB345
CSPI02G13560Cucumber (Gy14) v1cgycpiB546
CSPI02G13560Cucurbita maxima (Rimu)cmacpiB118
CSPI02G13560Cucurbita maxima (Rimu)cmacpiB511
CSPI02G13560Cucurbita maxima (Rimu)cmacpiB547
CSPI02G13560Cucurbita maxima (Rimu)cmacpiB588
CSPI02G13560Cucurbita maxima (Rimu)cmacpiB664
CSPI02G13560Cucurbita moschata (Rifu)cmocpiB104
CSPI02G13560Cucurbita moschata (Rifu)cmocpiB500
CSPI02G13560Cucurbita moschata (Rifu)cmocpiB536
CSPI02G13560Cucurbita moschata (Rifu)cmocpiB577
CSPI02G13560Cucurbita moschata (Rifu)cmocpiB656
CSPI02G13560Cucumber (Chinese Long) v2cpicuB085
CSPI02G13560Cucumber (Chinese Long) v2cpicuB094
CSPI02G13560Melon (DHL92) v3.5.1cpimeB097
CSPI02G13560Melon (DHL92) v3.5.1cpimeB102
CSPI02G13560Melon (DHL92) v3.5.1cpimeB152
CSPI02G13560Watermelon (Charleston Gray)cpiwcgB120
CSPI02G13560Watermelon (Charleston Gray)cpiwcgB125
CSPI02G13560Watermelon (Charleston Gray)cpiwcgB131
CSPI02G13560Watermelon (97103) v1cpiwmB139
CSPI02G13560Watermelon (97103) v1cpiwmB142
CSPI02G13560Watermelon (97103) v1cpiwmB150
CSPI02G13560Cucurbita pepo (Zucchini)cpecpiB054
CSPI02G13560Cucurbita pepo (Zucchini)cpecpiB239
CSPI02G13560Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G13560Cucurbita pepo (Zucchini)cpecpiB668
CSPI02G13560Cucurbita pepo (Zucchini)cpecpiB713
CSPI02G13560Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G13560Bottle gourd (USVL1VR-Ls)cpilsiB100
CSPI02G13560Bottle gourd (USVL1VR-Ls)cpilsiB108