CSPI02G05310 (gene) Wild cucumber (PI 183967)

NameCSPI02G05310
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUbiquitin-like protein
LocationChr2 : 3776864 .. 3779601 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGTACTTCACATCTATCTATATATCCAGCTGTGTTTAAATTTGAGTGATTCAGACCTTAACCTTGCTACTATACTTTTATTATCATTTTTCTGATTAAACTGGTTTAGTTTATAAGTATAGAGAACTCAAAGCAGGCCTGCAAAATTAATGTTGTTTATTTGTTCTCATCACGAGCAAGTAGCTGTCCATATTATCTATAACCTTGTAATTATGTACCATTGTATCCATATATTCTTTATTGTCAATGTTTCTTCTAAGCATCAAGGCATAGATTCAACGCGAAATCATTGCACAAGCATGGTGTGTAATATTGTGTTGGCTAGAACACCTAATGTGTTCTTGTATTATTGTAAGCATTAATTAAACTGTGTAACAAAACTTTTAACACTTGGTATAAGAGAGGCCAGTTTGATGGTCTAACTGGGAAACTCAATGGCCGCAATGTACACGACAACATGGTGGAGACTATCTTTTGCTACTTTTCCAATAACTCACTTTCATGGTTAGTCAGTATGAAGGTGGAGATTATTTCAAAGCAGGATTTATTTTCATCCTACTTGACCAGAAGTTTTATTTTCTCGAAAGACCAAACATCTTTAAAAAAATTATTTAATAATAAGAAGTACATGCCTTTCTGTGGTTTTGTGATCATATACAATTCACTGCCTCAGAGTTCAGCTTCTTGTTTCAAGTTTGGAAAAAAAAATGCTCTCCTCTCTCCTCCCCTGTGCAGTTCACAACATCTAGTTGTAGAGCTTTGTCTAGGCATGTTTTGTAATCTCCATTTGGGGAGAGGACAAATATCTCCTTGGCCTTTGGGTTTTGTGATTATATGTTGAGAAATCAAATATTGACACAATTTTGACCCGGGAAGAATATCAGTAAGCTCTAATTTTTTTATTCTAAGATCGGCCTACCTTTTCTTCCCACTGAGCTACTTGGTCATGATTAGCTGTTGTAGGTGCTTGATGATTTTAATAGGAATATGGTTGACAAAACTTGGTATTTTTGTTCTCTCAACAATTTATAGTGGCTTTTAGAATATAGTAGGAAAATCCAAGGGCATGGAGAATCCAGTTAAGGAATTCATGATGCCACTTTAGTTTGCCCCTTCTCTTGGATTTGACACATACATCTAGATTTTTTCTGACATTTATTCTTACTCATCTTTTGAGGGATCAATTCTACATTTGTTTGCATTTCGTAAGCTTTGTGCCTGTAATCTTTTCTTTGGCTGGTATTGATTGAGTTTTAGTCGCACTATAGCAAACCAAAATATATAAACTGGCTCTTTTCATAAAATGTTATACCATTTGAACGTGATATAAATGCCTTCAATTGGTTTTCAACTTCCATTTGACTGTCTCTATTCATTATGTTTTTTGTGCCATATTTGCATACAATAGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCAACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTAGGTCTTCAATACATTTATTTATTACATTCGGTGATCAGTTATCAGATTTTCTGGAAATATTAAGGTTATGAAAATACAACGGCTACAATTCTGATAACATTTTCTATATATTTTCAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGGTTTTTCCCTACCACCTCCCACAATCTTTTTGTGAACTTCTTGTTCTAGTACTTCTTTTTAGAAGCCTGTCTTCTGATCAAGAACTGAGAGTTATTTATGTGCTTGTACTTGGATTTGGAGTCTTTTTACAGTTATGGTCTTCGTTGTCATTGGATCTGGATTCGGAATATGAAACTAATAGGAACGGTATTGAGGTGTTATTATTAAGAGGGCATTTGGCTCATTGTATGAAGTTAATAAGTCTGAGATTAATATGTTGGATTTAGTAAGTTTGTGTTTGGGTGTAGAGTTGTAAGATTGAGTTCCTCAATAATTGTGAAAAGTAAATTAAGAAAGTAAGATAGAGTTATTTGATCAATGTGAAAAGTAGAGATCGGAAAATTGAGTTATTTGGTAAATGTGGGTGGTATAAAAAACATATAGAAAGATAAAGTTACTCGATAAATTGAATTGTTAAGCCTAACATCCGTTGAGAGTGTATTAGATAGGGAGGTTATTATGATATTTGGTTATCAATACAGAGTAAGAAGAAATGAGTATTTTGGCAAAATTTTAGTTAGTGAATCAAAGACTTGAGAGACGTCTCACAAGGGAGGTTTTTAAGTTCCTCGAATTACTCGGTATACTGTCATCCTTTCCCTTTTTAATCCAACCCCTCCCCCCTCCCTCCCTCCTTTTTTGGCTTCTCTATTATTCTAGAGGTACAATTCTCCTGTACTTTGAGTTTTACATCAACAAATTAACAAAGAAGCTTGTCTCCTTTTCAAAAAAAAAAGTTTCTCGAATTACTTTTTATTTCAATATAGTTGGTTGTGTTTTGGTTCCTATAAAAAAAATGTTTTCTCATTGCATGTTTTCTTGATATAACATGCGATTTTTCCCTTTCTTTGTGTAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA

mRNA sequence

ATGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCAACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA

Coding sequence (CDS)

ATGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCAACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA
BLAST of CSPI02G05310 vs. TrEMBL
Match: Q8VWY0_CUCSA (Ubiquitin-like protein OS=Cucumis sativus GN=UBI-1 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
           MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA
Sbjct: 1   MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60

Query: 61  DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAVGKD 104
           DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAVGKD
Sbjct: 61  DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAVGKD 103

BLAST of CSPI02G05310 vs. TrEMBL
Match: A0A0B0NRY4_GOSAR (Ubiquitin-like protein OS=Gossypium arboreum GN=F383_05925 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.6e-37
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ETTL+IKQKL +LIDQPV DQRLILM +G++LEDSKTLA
Sbjct: 1  MAMYIRVKRSKTTYFIQCDPTETTLDIKQKLHTLIDQPVNDQRLILMNTGDILEDSKTLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          DQKVENDAVVALTLRKDDN+FE++NIV P+DFYQS
Sbjct: 61 DQKVENDAVVALTLRKDDNEFEDVNIVKPNDFYQS 95

BLAST of CSPI02G05310 vs. TrEMBL
Match: A0A0D2P401_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G273700 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.6e-37
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ETTL+IKQKL +LIDQPV DQRLILM +G++LEDSKTLA
Sbjct: 1  MAMYIRVKRSKTTYFIQCDPTETTLDIKQKLHTLIDQPVNDQRLILMSNGDILEDSKTLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          DQKVENDAVVALTLRKDDN+FE++NIV P+DFYQS
Sbjct: 61 DQKVENDAVVALTLRKDDNEFEDVNIVKPNDFYQS 95

BLAST of CSPI02G05310 vs. TrEMBL
Match: A0A061GWI4_THECC (Ubiquitin-like superfamily protein OS=Theobroma cacao GN=TCM_038415 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-36
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ET L+IKQKL +LIDQPV DQRLIL+ +GE+LEDSKTLA
Sbjct: 1  MAMYIRVKRSKTTYFIQCDPTETALDIKQKLHTLIDQPVNDQRLILVNTGEILEDSKTLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          DQKVENDAVVALTLRKDDN+FE++NIV P+DFYQS
Sbjct: 61 DQKVENDAVVALTLRKDDNEFEDVNIVQPNDFYQS 95

BLAST of CSPI02G05310 vs. TrEMBL
Match: A9PCX0_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-36
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIR+KR+KTTYFIQCDP E TL IKQKL  LIDQPV DQRLIL+G+GEVLEDSK+LA
Sbjct: 1  MAMYIRVKRNKTTYFIQCDPTEKTLEIKQKLNVLIDQPVNDQRLILVGTGEVLEDSKSLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          +QKVENDAVVALTLRKDDN+FE+++IV PDDFYQS
Sbjct: 61 EQKVENDAVVALTLRKDDNEFEDVSIVRPDDFYQS 95

BLAST of CSPI02G05310 vs. TAIR10
Match: AT5G57860.1 (AT5G57860.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 3.2e-34
Identity = 69/92 (75.00%), Postives = 82/92 (89.13%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ET L++KQKL +LI+QPV +QRL+LM + EVLEDSK+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDF 93
          DQKVENDAVVALTL+KDDN+FE++NI  P DF
Sbjct: 61 DQKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92

BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|525506935|ref|NP_001267513.1| (transcription elongation factor B polypeptide 2-like [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 4.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
           MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA
Sbjct: 1   MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60

Query: 61  DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAVGKD 104
           DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAVGKD
Sbjct: 61  DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQSPILAVGKD 103

BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|659069945|ref|XP_008452565.1| (PREDICTED: transcription elongation factor B polypeptide 2 isoform X1 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA
Sbjct: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          DQKVENDAVVALTLRK+DNDFEEINIVHP+DFYQS
Sbjct: 61 DQKVENDAVVALTLRKEDNDFEEINIVHPNDFYQS 95

BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|659069947|ref|XP_008452573.1| (PREDICTED: transcription elongation factor B polypeptide 2 isoform X2 [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 6.1e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 3  MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQ 62
          MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQ
Sbjct: 1  MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQ 60

Query: 63 KVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          KVENDAVVALTLRK+DNDFEEINIVHP+DFYQS
Sbjct: 61 KVENDAVVALTLRKEDNDFEEINIVHPNDFYQS 93

BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|823154420|ref|XP_012477084.1| (PREDICTED: uncharacterized protein LOC105792831 isoform X1 [Gossypium raimondii])

HSP 1 Score: 161.8 bits (408), Expect = 6.6e-37
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ETTL+IKQKL +LIDQPV DQRLILM +G++LEDSKTLA
Sbjct: 1  MAMYIRVKRSKTTYFIQCDPTETTLDIKQKLHTLIDQPVNDQRLILMSNGDILEDSKTLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          DQKVENDAVVALTLRKDDN+FE++NIV P+DFYQS
Sbjct: 61 DQKVENDAVVALTLRKDDNEFEDVNIVKPNDFYQS 95

BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|728835969|gb|KHG15412.1| (Ubiquitin-like protein [Gossypium arboreum])

HSP 1 Score: 161.8 bits (408), Expect = 6.6e-37
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 1  MAMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLA 60
          MAMYIR+KR KTTYFIQCDP ETTL+IKQKL +LIDQPV DQRLILM +G++LEDSKTLA
Sbjct: 1  MAMYIRVKRSKTTYFIQCDPTETTLDIKQKLHTLIDQPVNDQRLILMNTGDILEDSKTLA 60

Query: 61 DQKVENDAVVALTLRKDDNDFEEINIVHPDDFYQS 96
          DQKVENDAVVALTLRKDDN+FE++NIV P+DFYQS
Sbjct: 61 DQKVENDAVVALTLRKDDNEFEDVNIVKPNDFYQS 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Q8VWY0_CUCSA2.8e-50100.00Ubiquitin-like protein OS=Cucumis sativus GN=UBI-1 PE=2 SV=1[more]
A0A0B0NRY4_GOSAR4.6e-3783.16Ubiquitin-like protein OS=Gossypium arboreum GN=F383_05925 PE=4 SV=1[more]
A0A0D2P401_GOSRA4.6e-3783.16Uncharacterized protein OS=Gossypium raimondii GN=B456_004G273700 PE=4 SV=1[more]
A0A061GWI4_THECC1.7e-3682.11Ubiquitin-like superfamily protein OS=Theobroma cacao GN=TCM_038415 PE=4 SV=1[more]
A9PCX0_POPTR5.1e-3682.11Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G57860.13.2e-3475.00 Ubiquitin-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|525506935|ref|NP_001267513.1|4.0e-50100.00transcription elongation factor B polypeptide 2-like [Cucumis sativus][more]
gi|659069945|ref|XP_008452565.1|5.6e-4497.89PREDICTED: transcription elongation factor B polypeptide 2 isoform X1 [Cucumis m... [more]
gi|659069947|ref|XP_008452573.1|6.1e-4397.85PREDICTED: transcription elongation factor B polypeptide 2 isoform X2 [Cucumis m... [more]
gi|823154420|ref|XP_012477084.1|6.6e-3783.16PREDICTED: uncharacterized protein LOC105792831 isoform X1 [Gossypium raimondii][more]
gi|728835969|gb|KHG15412.1|6.6e-3783.16Ubiquitin-like protein [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G05310.1CSPI02G05310.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 5..76
score: 2.0
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 3..75
score: 1.1
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 1..79
score: 15
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..86
score: 3.0
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 5..75
score: 4.8

The following gene(s) are paralogous to this gene:

None