CSPI02G05310 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGAGTACTTCACATCTATCTATATATCCAGCTGTGTTTAAATTTGAGTGATTCAGACCTTAACCTTGCTACTATACTTTTATTATCATTTTTCTGATTAAACTGGTTTAGTTTATAAGTATAGAGAACTCAAAGCAGGCCTGCAAAATTAATGTTGTTTATTTGTTCTCATCACGAGCAAGTAGCTGTCCATATTATCTATAACCTTGTAATTATGTACCATTGTATCCATATATTCTTTATTGTCAATGTTTCTTCTAAGCATCAAGGCATAGATTCAACGCGAAATCATTGCACAAGCATGGTGTGTAATATTGTGTTGGCTAGAACACCTAATGTGTTCTTGTATTATTGTAAGCATTAATTAAACTGTGTAACAAAACTTTTAACACTTGGTATAAGAGAGGCCAGTTTGATGGTCTAACTGGGAAACTCAATGGCCGCAATGTACACGACAACATGGTGGAGACTATCTTTTGCTACTTTTCCAATAACTCACTTTCATGGTTAGTCAGTATGAAGGTGGAGATTATTTCAAAGCAGGATTTATTTTCATCCTACTTGACCAGAAGTTTTATTTTCTCGAAAGACCAAACATCTTTAAAAAAATTATTTAATAATAAGAAGTACATGCCTTTCTGTGGTTTTGTGATCATATACAATTCACTGCCTCAGAGTTCAGCTTCTTGTTTCAAGTTTGGAAAAAAAAATGCTCTCCTCTCTCCTCCCCTGTGCAGTTCACAACATCTAGTTGTAGAGCTTTGTCTAGGCATGTTTTGTAATCTCCATTTGGGGAGAGGACAAATATCTCCTTGGCCTTTGGGTTTTGTGATTATATGTTGAGAAATCAAATATTGACACAATTTTGACCCGGGAAGAATATCAGTAAGCTCTAATTTTTTTATTCTAAGATCGGCCTACCTTTTCTTCCCACTGAGCTACTTGGTCATGATTAGCTGTTGTAGGTGCTTGATGATTTTAATAGGAATATGGTTGACAAAACTTGGTATTTTTGTTCTCTCAACAATTTATAGTGGCTTTTAGAATATAGTAGGAAAATCCAAGGGCATGGAGAATCCAGTTAAGGAATTCATGATGCCACTTTAGTTTGCCCCTTCTCTTGGATTTGACACATACATCTAGATTTTTTCTGACATTTATTCTTACTCATCTTTTGAGGGATCAATTCTACATTTGTTTGCATTTCGTAAGCTTTGTGCCTGTAATCTTTTCTTTGGCTGGTATTGATTGAGTTTTAGTCGCACTATAGCAAACCAAAATATATAAACTGGCTCTTTTCATAAAATGTTATACCATTTGAACGTGATATAAATGCCTTCAATTGGTTTTCAACTTCCATTTGACTGTCTCTATTCATTATGTTTTTTGTGCCATATTTGCATACAATAGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCAACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTAGGTCTTCAATACATTTATTTATTACATTCGGTGATCAGTTATCAGATTTTCTGGAAATATTAAGGTTATGAAAATACAACGGCTACAATTCTGATAACATTTTCTATATATTTTCAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGGTTTTTCCCTACCACCTCCCACAATCTTTTTGTGAACTTCTTGTTCTAGTACTTCTTTTTAGAAGCCTGTCTTCTGATCAAGAACTGAGAGTTATTTATGTGCTTGTACTTGGATTTGGAGTCTTTTTACAGTTATGGTCTTCGTTGTCATTGGATCTGGATTCGGAATATGAAACTAATAGGAACGGTATTGAGGTGTTATTATTAAGAGGGCATTTGGCTCATTGTATGAAGTTAATAAGTCTGAGATTAATATGTTGGATTTAGTAAGTTTGTGTTTGGGTGTAGAGTTGTAAGATTGAGTTCCTCAATAATTGTGAAAAGTAAATTAAGAAAGTAAGATAGAGTTATTTGATCAATGTGAAAAGTAGAGATCGGAAAATTGAGTTATTTGGTAAATGTGGGTGGTATAAAAAACATATAGAAAGATAAAGTTACTCGATAAATTGAATTGTTAAGCCTAACATCCGTTGAGAGTGTATTAGATAGGGAGGTTATTATGATATTTGGTTATCAATACAGAGTAAGAAGAAATGAGTATTTTGGCAAAATTTTAGTTAGTGAATCAAAGACTTGAGAGACGTCTCACAAGGGAGGTTTTTAAGTTCCTCGAATTACTCGGTATACTGTCATCCTTTCCCTTTTTAATCCAACCCCTCCCCCCTCCCTCCCTCCTTTTTTGGCTTCTCTATTATTCTAGAGGTACAATTCTCCTGTACTTTGAGTTTTACATCAACAAATTAACAAAGAAGCTTGTCTCCTTTTCAAAAAAAAAAGTTTCTCGAATTACTTTTTATTTCAATATAGTTGGTTGTGTTTTGGTTCCTATAAAAAAAATGTTTTCTCATTGCATGTTTTCTTGATATAACATGCGATTTTTCCCTTTCTTTGTGTAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA ATGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCAACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA ATGGCAATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGTGATCCAATTGAGACAACTTTAAATATCAAGCAAAAATTAGAGTCCCTTATTGACCAACCAGTAGTTGACCAGCGCTTGATCCTAATGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTGGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACGTTGCGAAAAGATGATAATGACTTCGAGGAAATCAACATTGTCCATCCAGACGATTTCTACCAATCACCGATTCTGGCGGTTGGTAAGGACTAA
BLAST of CSPI02G05310 vs. TrEMBL
Match: Q8VWY0_CUCSA (Ubiquitin-like protein OS=Cucumis sativus GN=UBI-1 PE=2 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 2.8e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of CSPI02G05310 vs. TrEMBL
Match: A0A0B0NRY4_GOSAR (Ubiquitin-like protein OS=Gossypium arboreum GN=F383_05925 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 4.6e-37 Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1
BLAST of CSPI02G05310 vs. TrEMBL
Match: A0A0D2P401_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G273700 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 4.6e-37 Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1
BLAST of CSPI02G05310 vs. TrEMBL
Match: A0A061GWI4_THECC (Ubiquitin-like superfamily protein OS=Theobroma cacao GN=TCM_038415 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.7e-36 Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 1
BLAST of CSPI02G05310 vs. TrEMBL
Match: A9PCX0_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 5.1e-36 Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 1
BLAST of CSPI02G05310 vs. TAIR10
Match: AT5G57860.1 (AT5G57860.1 Ubiquitin-like superfamily protein) HSP 1 Score: 141.4 bits (355), Expect = 3.2e-34 Identity = 69/92 (75.00%), Postives = 82/92 (89.13%), Query Frame = 1
BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|525506935|ref|NP_001267513.1| (transcription elongation factor B polypeptide 2-like [Cucumis sativus]) HSP 1 Score: 205.7 bits (522), Expect = 4.0e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|659069945|ref|XP_008452565.1| (PREDICTED: transcription elongation factor B polypeptide 2 isoform X1 [Cucumis melo]) HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44 Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 1
BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|659069947|ref|XP_008452573.1| (PREDICTED: transcription elongation factor B polypeptide 2 isoform X2 [Cucumis melo]) HSP 1 Score: 181.8 bits (460), Expect = 6.1e-43 Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|823154420|ref|XP_012477084.1| (PREDICTED: uncharacterized protein LOC105792831 isoform X1 [Gossypium raimondii]) HSP 1 Score: 161.8 bits (408), Expect = 6.6e-37 Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1
BLAST of CSPI02G05310 vs. NCBI nr
Match: gi|728835969|gb|KHG15412.1| (Ubiquitin-like protein [Gossypium arboreum]) HSP 1 Score: 161.8 bits (408), Expect = 6.6e-37 Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |