CSPI01G27780 (gene) Wild cucumber (PI 183967)

NameCSPI01G27780
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMyb transcription factor
LocationChr1 : 22569831 .. 22571029 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAAGCTTCCATCCATGGCAGCCCCCTCTCTCTGATCTTTTTCTCTCTTTCTCTTTCTTCAATCCCCATGGGAAGAGCTCCTTGTTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCACCTCAAGAAGACGCCACACTCACTGCCTTTATTCATAAACATGGCACCGGTGGCAATTGGATCGCTCTCCCTCATAAAGCAGGTTCGTTTTGTAACCATTTTGGTGTGTTTTAAGCTTTTGGGTTCATTGATGATGTACGAGTTTTCTTCTCTAGGGCTTAATCGATGCGGGAAAAGCTGCCGGCTAAGGTGGCTGAATTATCTCAGACCAGATATTAAACATGGAGGTTTCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACCATTGGAAGTAGGCAAGTTTTCTTCTCCGTTTACAGAAAAAATTGAATATGTATTTTTCATTATTTCTTTGTAATTATATTATAAACCAACTTGATGGAAAATTACTTGTTTGAAAATTTGATTTTGATAATGAAAGGAAATGGTAAGAAGTAGAGATGTAACGAAGGAAAGAAACTAATGGATGAAAAAAGATGTTGGTACGTTTTGAGATATATGTGATATGAAACGTAGTGATTTGTTTTGATTTAGGTGGGCGGTAATTGCATCACAATTACCTGGAAGAACGGACAACGACGTGAAAAACCACTGGAATACAAAGTTAAAGAAGAAGTTCAATAGTTCATTTTCTAAACCACCAAATCCCATCGTGGTTGTCACTGACCCGCCGCGATATTCCTCGACAAGTACTGCAAATTCCTTAAAACTCCATGATGATCATGAACACAACATCAACACCAACTTCAACATGTTTTCAAGCCATCCTCCTTTTGATCAAATTCCGATGTTGAACAATAACAATAATCCAATAATACCAGAACTATCCACTTCCTCATCTTCAATTTCACTACCCATCGAGCAAAACCACCTCGAATTTTCCGGTCCGAGCTCCGACGAGGCAGCAGATATCCTACAAAGTTATTTCCATGGGGTTTATGAGAACAATAATCAATACCCATATGAAGATGATGTTATGGATGGATTTGATGTAAGTAATTACATGGGATTATGATGATTAATGAATTAGAATTATTGTTGAGGACTTGGTCAAAGGGGGAAAAGGACATTTTATGTGTTTGTTTTC

mRNA sequence

ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCACCTCAAGAAGACGCCACACTCACTGCCTTTATTCATAAACATGGCACCGGTGGCAATTGGATCGCTCTCCCTCATAAAGCAGGGCTTAATCGATGCGGGAAAAGCTGCCGGCTAAGGTGGCTGAATTATCTCAGACCAGATATTAAACATGGAGGTTTCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACCATTGGAAGTAGGTGGGCGGTAATTGCATCACAATTACCTGGAAGAACGGACAACGACGTGAAAAACCACTGGAATACAAAGTTAAAGAAGAAGTTCAATAGTTCATTTTCTAAACCACCAAATCCCATCGTGGTTGTCACTGACCCGCCGCGATATTCCTCGACAAGTACTGCAAATTCCTTAAAACTCCATGATGATCATGAACACAACATCAACACCAACTTCAACATGTTTTCAAGCCATCCTCCTTTTGATCAAATTCCGATGTTGAACAATAACAATAATCCAATAATACCAGAACTATCCACTTCCTCATCTTCAATTTCACTACCCATCGAGCAAAACCACCTCGAATTTTCCGGTCCGAGCTCCGACGAGGCAGCAGATATCCTACAAAGTTATTTCCATGGGGTTTATGAGAACAATAATCAATACCCATATGAAGATGATGTTATGGATGGATTTGATGTAAGTAATTACATGGGATTATGA

Coding sequence (CDS)

ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCACCTCAAGAAGACGCCACACTCACTGCCTTTATTCATAAACATGGCACCGGTGGCAATTGGATCGCTCTCCCTCATAAAGCAGGGCTTAATCGATGCGGGAAAAGCTGCCGGCTAAGGTGGCTGAATTATCTCAGACCAGATATTAAACATGGAGGTTTCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACCATTGGAAGTAGGTGGGCGGTAATTGCATCACAATTACCTGGAAGAACGGACAACGACGTGAAAAACCACTGGAATACAAAGTTAAAGAAGAAGTTCAATAGTTCATTTTCTAAACCACCAAATCCCATCGTGGTTGTCACTGACCCGCCGCGATATTCCTCGACAAGTACTGCAAATTCCTTAAAACTCCATGATGATCATGAACACAACATCAACACCAACTTCAACATGTTTTCAAGCCATCCTCCTTTTGATCAAATTCCGATGTTGAACAATAACAATAATCCAATAATACCAGAACTATCCACTTCCTCATCTTCAATTTCACTACCCATCGAGCAAAACCACCTCGAATTTTCCGGTCCGAGCTCCGACGAGGCAGCAGATATCCTACAAAGTTATTTCCATGGGGTTTATGAGAACAATAATCAATACCCATATGAAGATGATGTTATGGATGGATTTGATGTAAGTAATTACATGGGATTATGA
BLAST of CSPI01G27780 vs. Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-56
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDA L  +I K GTGGNWIALPHKAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+I+HG FT+EEDN+I SL+++IGSRW+VIA+ L GRTDND+KN+WNTKLKKK  ++
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIAT 120

Query: 121 FSKPP-NPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTN 160
            + PP + + + T     S +S+++   ++    +N +TN
Sbjct: 121 MAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNPSTN 160

BLAST of CSPI01G27780 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.2e-56
Identity = 91/116 (78.45%), Postives = 107/116 (92.24%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+EDA L ++I   GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKK 117
           YLRP+IKHGGF++EE+N+ICSLY TIGSRW++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

BLAST of CSPI01G27780 vs. Swiss-Prot
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.9e-54
Identity = 111/216 (51.39%), Postives = 142/216 (65.74%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+ED  L  +I K+GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF++EED +I SLY +IGSRW++IA+QLPGRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 FSKPPNPIVVVTD-------------PPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHP 180
             K  N    +TD              P+  S S    L+LH   + N+ + F+ F ++P
Sbjct: 121 -QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ-NLQSPFSSFYNNP 180

Query: 181 PF--DQIPMLNNNNNPIIPELSTSSSSISLPIEQNH 202
                  P+L +      P+L++  S   L +  +H
Sbjct: 181 ILWPKLHPLLQSTTTNQNPKLASQESFHPLGVNVDH 214

BLAST of CSPI01G27780 vs. Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.3e-50
Identity = 106/207 (51.21%), Postives = 136/207 (65.70%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK  VKRGPWSP+ED+ L  +I K+G GGNWI+ P KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHG F++EED +I SL++ IGSRW++IA+ LPGRTDND+KN+WNTKL+KK  SS
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

Query: 121 FSKPP---------NPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFD- 180
            S            NPI      P   +T  ++S   + ++ +   T  ++ SS   F+ 
Sbjct: 121 SSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSYNPYAENPNQYPTK-SLISSINGFEA 180

Query: 181 ---QIPMLNNNNNPIIPELSTSSSSIS 195
              QI    N N P    LS S+++ S
Sbjct: 181 GDKQIISYINPNYPQDLYLSDSNNNTS 206

BLAST of CSPI01G27780 vs. Swiss-Prot
Match: MYB80_ORYSJ (Transcription factor MYB80 OS=Oryza sativa subsp. japonica GN=MYB80 PE=2 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 2.7e-44
Identity = 84/152 (55.26%), Postives = 104/152 (68.42%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGR PCC+K +VKRG W+P+ED  L ++I ++GT  NW  +P  AGL RCGKSCRLRW N
Sbjct: 1   MGRVPCCEKDNVKRGQWTPEEDNKLLSYITQYGTR-NWRLIPKNAGLQRCGKSCRLRWTN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKF--- 120
           YLRPD+KHG FT  E+  I  L+S +G+RW+VIA+QLPGRTDNDVKNHWNTKLKKK    
Sbjct: 61  YLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIAAQLPGRTDNDVKNHWNTKLKKKLSGM 120

Query: 121 ------NSSFSKPPNPIVVVTDPPRYSSTSTA 144
                 + SFS     I     PP+ +  + A
Sbjct: 121 GIDPVTHKSFSHLMAEIATTLAPPQVAHLAEA 151

BLAST of CSPI01G27780 vs. TrEMBL
Match: A0A0A0LZB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575180 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 8.4e-146
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
           FSKPPNPIVVVTDPPRYS+TSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN
Sbjct: 121 FSKPPNPIVVVTDPPRYSATSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240
           PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF
Sbjct: 181 PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240

Query: 241 DVSNYMGL 249
           DVSNYMGL
Sbjct: 241 DVSNYMGL 248

BLAST of CSPI01G27780 vs. TrEMBL
Match: M0TBM8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.0e-59
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL A+I KHGTGGNWIALPHK GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPEEDATLKAYIEKHGTGGNWIALPHKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF+ EED++ICSLYS+IGSRW++IA+QLPGRTDND+KNHWNT+LKKK    
Sbjct: 61  YLRPNIKHGGFSVEEDHIICSLYSSIGSRWSIIAAQLPGRTDNDIKNHWNTRLKKKLLGK 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINT----NFNMFSSHPPFDQIPMLN 180
             +PP P  +  +     ST  AN++ L   H   ++        +     PF     L 
Sbjct: 121 PREPPQPRCLSVN---QVSTEVANAMSL-QTHPQTLSAPALERMQLRGCEDPFFYHHPLG 180

Query: 181 NNNNPIIPELSTSSSSISLPIEQNH 202
           +    +  +  T +S+ + PI+ +H
Sbjct: 181 DK---LFEDQHTDTSTSTTPIDSSH 198

BLAST of CSPI01G27780 vs. TrEMBL
Match: K7MNI7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G231900 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.3e-58
Identity = 120/232 (51.72%), Postives = 154/232 (66.38%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL  ++  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKNYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFT+EEDN+IC+LY+ +GSRW+ IAS+LPGRTDNDVKN+WNTKLKKK  + 
Sbjct: 61  YLRPDIKHGGFTEEEDNIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAR 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
                  +  +T      STST +SL  + + + + N+ F   + + P   +P+L+ NN 
Sbjct: 121 ----KVTLKTLTHNDTLPSTSTPSSLTNNQNVKTSQNSPFPSQNQNSPPSVLPVLDANNA 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPS-SDEAADILQSYFHGVYENNNQYP 232
             I    T++    +  +Q H     P   D+    + +    +  NNN  P
Sbjct: 181 LFI----TNNEKSIISFDQTHHGLYSPQVMDDVVSQIGASSRIINNNNNNNP 224

BLAST of CSPI01G27780 vs. TrEMBL
Match: Q4A3I7_HUMLU (Myb-like protein OS=Humulus lupulus GN=myb1 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.9e-58
Identity = 100/116 (86.21%), Postives = 108/116 (93.10%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK  VKRGPWSP+EDA L  ++H +GTGGNWIALPHKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDAALKHYMHNNGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKK 117
           YLRPDIKHGGFT+EEDNV+ +LYS IGSRW+VIASQLPGRTDNDVKNHWNTKLKKK
Sbjct: 61  YLRPDIKHGGFTEEEDNVVWTLYSNIGSRWSVIASQLPGRTDNDVKNHWNTKLKKK 116

BLAST of CSPI01G27780 vs. TrEMBL
Match: A0A061GIZ2_THECC (Myb domain protein 84, putative OS=Theobroma cacao GN=TCM_037245 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.9e-58
Identity = 101/122 (82.79%), Postives = 112/122 (91.80%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL ++I  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKSYIETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFT+EEDN+IC+LYS +GSRW++IASQLPGRTDNDVKN+WNTKLKKK  S 
Sbjct: 61  YLRPDIKHGGFTEEEDNIICTLYSQMGSRWSLIASQLPGRTDNDVKNYWNTKLKKKLASG 120

Query: 121 FS 123
            S
Sbjct: 121 KS 122

BLAST of CSPI01G27780 vs. TAIR10
Match: AT2G36890.1 (AT2G36890.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-57
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDA L  +I K GTGGNWIALPHKAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+I+HG FT+EEDN+I SL+++IGSRW+VIA+ L GRTDND+KN+WNTKLKKK  ++
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIAT 120

Query: 121 FSKPP-NPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTN 160
            + PP + + + T     S +S+++   ++    +N +TN
Sbjct: 121 MAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNPSTN 160

BLAST of CSPI01G27780 vs. TAIR10
Match: AT3G49690.1 (AT3G49690.1 myb domain protein 84)

HSP 1 Score: 219.2 bits (557), Expect = 2.9e-57
Identity = 91/116 (78.45%), Postives = 107/116 (92.24%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+EDA L ++I   GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKK 117
           YLRP+IKHGGF++EE+N+ICSLY TIGSRW++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

BLAST of CSPI01G27780 vs. TAIR10
Match: AT5G65790.1 (AT5G65790.1 myb domain protein 68)

HSP 1 Score: 218.4 bits (555), Expect = 5.0e-57
Identity = 91/116 (78.45%), Postives = 106/116 (91.38%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+EDA L  +I   GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKK 117
           YLRP+IKHGGF++EEDN+IC+LY TIGSRW++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

BLAST of CSPI01G27780 vs. TAIR10
Match: AT4G37780.1 (AT4G37780.1 myb domain protein 87)

HSP 1 Score: 216.1 bits (549), Expect = 2.5e-56
Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK +VK+GPWS +EDA L ++I KHGTG NWI+LP + G+ RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP++KHGGFT EED +ICSLY TIGSRW++IASQLPGRTDND+KN+WNT+LKKK  S 
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLSK 120

Query: 121 FSKP-PNPIVVVTDPPRYSSTSTANSLKL-HDDHEHNINTNFN 162
             K     + V  +    SS+S+ N +++ HD++  +  T +N
Sbjct: 121 QGKAFHQQLNVKFERGTTSSSSSQNQIQIFHDENTKSNQTLYN 163

BLAST of CSPI01G27780 vs. TAIR10
Match: AT5G57620.1 (AT5G57620.1 myb domain protein 36)

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-55
Identity = 111/216 (51.39%), Postives = 142/216 (65.74%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+ED  L  +I K+GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF++EED +I SLY +IGSRW++IA+QLPGRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 FSKPPNPIVVVTD-------------PPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHP 180
             K  N    +TD              P+  S S    L+LH   + N+ + F+ F ++P
Sbjct: 121 -QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ-NLQSPFSSFYNNP 180

Query: 181 PF--DQIPMLNNNNNPIIPELSTSSSSISLPIEQNH 202
                  P+L +      P+L++  S   L +  +H
Sbjct: 181 ILWPKLHPLLQSTTTNQNPKLASQESFHPLGVNVDH 214

BLAST of CSPI01G27780 vs. NCBI nr
Match: gi|449436058|ref|XP_004135811.1| (PREDICTED: transcription factor RAX2-like [Cucumis sativus])

HSP 1 Score: 524.2 bits (1349), Expect = 1.2e-145
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
           FSKPPNPIVVVTDPPRYS+TSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN
Sbjct: 121 FSKPPNPIVVVTDPPRYSATSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240
           PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF
Sbjct: 181 PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240

Query: 241 DVSNYMGL 249
           DVSNYMGL
Sbjct: 241 DVSNYMGL 248

BLAST of CSPI01G27780 vs. NCBI nr
Match: gi|659099860|ref|XP_008450812.1| (PREDICTED: transcription factor RAX2-like [Cucumis melo])

HSP 1 Score: 461.8 bits (1187), Expect = 7.4e-127
Identity = 227/251 (90.44%), Postives = 236/251 (94.02%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFTQEEDNVICSLYSTIGSRWA+IASQLPGRTDNDVKNHWNTKLKKKFN+S
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAIIASQLPGRTDNDVKNHWNTKLKKKFNNS 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLK-LHDDHEHNINTNFNMFSSHPPFDQIPMLNNNN 180
            S+PPN  ++VTDP RYSST TANSLK LH+DHEHNINTN+NMFSSHP FDQIPMLNNNN
Sbjct: 121 LSEPPNSTMIVTDPSRYSST-TANSLKVLHNDHEHNINTNYNMFSSHPRFDQIPMLNNNN 180

Query: 181 NPIIPELSTSSSSISLP-IEQNHL-EFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVM 240
           NPIIPELSTSSSSISLP IEQNHL EFSGP SDEA  ILQSYFHGVY+  NQYPYEDDVM
Sbjct: 181 NPIIPELSTSSSSISLPNIEQNHLEEFSGPGSDEAEIILQSYFHGVYD-YNQYPYEDDVM 240

Query: 241 DGFDVSNYMGL 249
           +GF VSNYMGL
Sbjct: 241 EGFGVSNYMGL 249

BLAST of CSPI01G27780 vs. NCBI nr
Match: gi|720035586|ref|XP_010267089.1| (PREDICTED: transcription repressor MYB6-like [Nelumbo nucifera])

HSP 1 Score: 236.1 bits (601), Expect = 6.6e-59
Identity = 124/257 (48.25%), Postives = 157/257 (61.09%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+ED  L  ++ KHGTGGNWIALPHKAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDTALKNYVEKHGTGGNWIALPHKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFT+EEDN+IC+LY TIGSRW+VIAS LPGRTDNDVKN+WNTKLKKK    
Sbjct: 61  YLRPDIKHGGFTEEEDNIICNLYKTIGSRWSVIASHLPGRTDNDVKNYWNTKLKKK---- 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHP---------PFDQ 180
                   ++  +    ++ S+++S+ ++D      N  FN   SHP          +D 
Sbjct: 121 --------MMGKNTLTSTNNSSSSSISIND------NIQFNSTPSHPVCPTKAEIVDYDF 180

Query: 181 IPMLNNNNNPIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYP 240
              L N N+   P  +      ++    N L  S P+      +++    G   NN+   
Sbjct: 181 SSFLINTNSATQPLSTGGGYGQNVGSNSNRL-VSDPTHFSLPGLMEPSEFGTSTNNSYSV 238

Query: 241 YEDDVMDGFDVSNYMGL 249
                  G  VS+ +G+
Sbjct: 241 SSSQEFSGLSVSSSLGM 238

BLAST of CSPI01G27780 vs. NCBI nr
Match: gi|695038316|ref|XP_009406664.1| (PREDICTED: transcription factor RAX3-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 235.7 bits (600), Expect = 8.6e-59
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL A+I KHGTGGNWIALPHK GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPEEDATLKAYIEKHGTGGNWIALPHKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF+ EED++ICSLYS+IGSRW++IA+QLPGRTDND+KNHWNT+LKKK    
Sbjct: 61  YLRPNIKHGGFSVEEDHIICSLYSSIGSRWSIIAAQLPGRTDNDIKNHWNTRLKKKLLGK 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINT----NFNMFSSHPPFDQIPMLN 180
             +PP P  +  +     ST  AN++ L   H   ++        +     PF     L 
Sbjct: 121 PREPPQPRCLSVN---QVSTEVANAMSL-QTHPQTLSAPALERMQLRGCEDPFFYHHPLG 180

Query: 181 NNNNPIIPELSTSSSSISLPIEQNH 202
           +    +  +  T +S+ + PI+ +H
Sbjct: 181 DK---LFEDQHTDTSTSTTPIDSSH 198

BLAST of CSPI01G27780 vs. NCBI nr
Match: gi|356564099|ref|XP_003550294.1| (PREDICTED: transcription factor RAX2-like [Glycine max])

HSP 1 Score: 233.8 bits (595), Expect = 3.3e-58
Identity = 120/232 (51.72%), Postives = 154/232 (66.38%), Query Frame = 1

Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL  ++  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKNYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFT+EEDN+IC+LY+ +GSRW+ IAS+LPGRTDNDVKN+WNTKLKKK  + 
Sbjct: 61  YLRPDIKHGGFTEEEDNIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAR 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
                  +  +T      STST +SL  + + + + N+ F   + + P   +P+L+ NN 
Sbjct: 121 ----KVTLKTLTHNDTLPSTSTPSSLTNNQNVKTSQNSPFPSQNQNSPPSVLPVLDANNA 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPS-SDEAADILQSYFHGVYENNNQYP 232
             I    T++    +  +Q H     P   D+    + +    +  NNN  P
Sbjct: 181 LFI----TNNEKSIISFDQTHHGLYSPQVMDDVVSQIGASSRIINNNNNNNP 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RAX2_ARATH2.3e-5662.50Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1[more]
RAX3_ARATH5.2e-5678.45Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1[more]
MYB36_ARATH4.9e-5451.39Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1[more]
RAX1_ARATH3.3e-5051.21Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1[more]
MYB80_ORYSJ2.7e-4455.26Transcription factor MYB80 OS=Oryza sativa subsp. japonica GN=MYB80 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LZB2_CUCSA8.4e-14699.60Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575180 PE=4 SV=1[more]
M0TBM8_MUSAM6.0e-5956.10Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
K7MNI7_SOYBN2.3e-5851.72Uncharacterized protein OS=Glycine max GN=GLYMA_17G231900 PE=4 SV=1[more]
Q4A3I7_HUMLU3.9e-5886.21Myb-like protein OS=Humulus lupulus GN=myb1 PE=2 SV=1[more]
A0A061GIZ2_THECC3.9e-5882.79Myb domain protein 84, putative OS=Theobroma cacao GN=TCM_037245 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G36890.11.3e-5762.50 Duplicated homeodomain-like superfamily protein[more]
AT3G49690.12.9e-5778.45 myb domain protein 84[more]
AT5G65790.15.0e-5778.45 myb domain protein 68[more]
AT4G37780.12.5e-5660.74 myb domain protein 87[more]
AT5G57620.12.7e-5551.39 myb domain protein 36[more]
Match NameE-valueIdentityDescription
gi|449436058|ref|XP_004135811.1|1.2e-14599.60PREDICTED: transcription factor RAX2-like [Cucumis sativus][more]
gi|659099860|ref|XP_008450812.1|7.4e-12790.44PREDICTED: transcription factor RAX2-like [Cucumis melo][more]
gi|720035586|ref|XP_010267089.1|6.6e-5948.25PREDICTED: transcription repressor MYB6-like [Nelumbo nucifera][more]
gi|695038316|ref|XP_009406664.1|8.6e-5956.10PREDICTED: transcription factor RAX3-like [Musa acuminata subsp. malaccensis][more]
gi|356564099|ref|XP_003550294.1|3.3e-5851.72PREDICTED: transcription factor RAX2-like [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017930Myb_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G27780.1CSPI01G27780.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..62
score: 1.9E-14coord: 69..111
score: 1.5
IPR001005SANT/Myb domainSMARTSM00717santcoord: 67..115
score: 1.7E-11coord: 13..64
score: 2.6
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 70..117
score: 3.9E-23coord: 15..69
score: 3.4
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 11..109
score: 2.23
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 9..62
score: 12.281coord: 63..117
score: 2
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 1..117
score: 1.2E
NoneNo IPR availablePANTHERPTHR10641:SF603SUBFAMILY NOT NAMEDcoord: 1..117
score: 1.2E

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G27780Bottle gourd (USVL1VR-Ls)cpilsiB013
CSPI01G27780Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G27780Bottle gourd (USVL1VR-Ls)cpilsiB082
CSPI01G27780Melon (DHL92) v3.6.1cpimedB058
CSPI01G27780Melon (DHL92) v3.6.1cpimedB062
CSPI01G27780Cucumber (Gy14) v2cgybcpiB002
CSPI01G27780Cucumber (Gy14) v2cgybcpiB053
CSPI01G27780Silver-seed gourdcarcpiB0035
CSPI01G27780Silver-seed gourdcarcpiB0106
CSPI01G27780Silver-seed gourdcarcpiB0602
CSPI01G27780Silver-seed gourdcarcpiB0929
CSPI01G27780Cucumber (Chinese Long) v3cpicucB024
CSPI01G27780Watermelon (97103) v2cpiwmbB021
CSPI01G27780Watermelon (97103) v2cpiwmbB043
CSPI01G27780Watermelon (97103) v2cpiwmbB085
CSPI01G27780Wax gourdcpiwgoB005
CSPI01G27780Wax gourdcpiwgoB013
CSPI01G27780Wild cucumber (PI 183967)cpicpiB010
CSPI01G27780Cucumber (Gy14) v1cgycpiB149
CSPI01G27780Cucurbita maxima (Rimu)cmacpiB084
CSPI01G27780Cucurbita maxima (Rimu)cmacpiB050
CSPI01G27780Cucurbita maxima (Rimu)cmacpiB158
CSPI01G27780Cucurbita maxima (Rimu)cmacpiB437
CSPI01G27780Cucurbita maxima (Rimu)cmacpiB788
CSPI01G27780Cucurbita moschata (Rifu)cmocpiB041
CSPI01G27780Cucurbita moschata (Rifu)cmocpiB145
CSPI01G27780Cucurbita moschata (Rifu)cmocpiB224
CSPI01G27780Cucurbita moschata (Rifu)cmocpiB781
CSPI01G27780Cucumber (Chinese Long) v2cpicuB019
CSPI01G27780Melon (DHL92) v3.5.1cpimeB066
CSPI01G27780Melon (DHL92) v3.5.1cpimeB069
CSPI01G27780Watermelon (Charleston Gray)cpiwcgB012
CSPI01G27780Watermelon (Charleston Gray)cpiwcgB089
CSPI01G27780Watermelon (97103) v1cpiwmB034
CSPI01G27780Watermelon (97103) v1cpiwmB079
CSPI01G27780Cucurbita pepo (Zucchini)cpecpiB086
CSPI01G27780Cucurbita pepo (Zucchini)cpecpiB362
CSPI01G27780Cucurbita pepo (Zucchini)cpecpiB655
CSPI01G27780Cucurbita pepo (Zucchini)cpecpiB806