CSPI01G23070 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23070
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRING-H2 finger protein ATL3F
LocationChr1 : 18723116 .. 18723565 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTGTCACCGTCGCCTCTGCCGCCATTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGTTGACGATCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATTTTATGTACAAAACGATCCGCCAAATCTGATAGGGAAGAGTTGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAACGAAGTTGAAGGCGGCGAACAAGAATGTGCGATTTGCCTCTGTGAAATTGAGGAAGGAGAAAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAAGTAAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTGTGGTAGTCATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

mRNA sequence

ATGCCGTTGTCACCGTCGCCTCTGCCGCCATTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGTTGACGATCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATTTTATGTACAAAACGATCCGCCAAATCTGATAGGGAAGAGTTGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAACGAAGTTGAAGGCGGCGAACAAGAATGTGCGATTTGCCTCTGTGAAATTGAGGAAGGAGAAAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAAGTAAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTGTGGTAGTCATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

Coding sequence (CDS)

ATGCCGTTGTCACCGTCGCCTCTGCCGCCATTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGTTGACGATCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATTTTATGTACAAAACGATCCGCCAAATCTGATAGGGAAGAGTTGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAACGAAGTTGAAGGCGGCGAACAAGAATGTGCGATTTGCCTCTGTGAAATTGAGGAAGGAGAAAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAAGTAAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTGTGGTAGTCATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA
Homology
[Close]
BLAST of CSPI01G23070 vs. Swiss-Prot
Match: ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 1 

Query: 23  VLLTISMLLLIVLFL-FIAILCTKRSAKSDREELSENLDIEA------------------ 82
           V++ I++L L++ F+ F +I C + +A+  R  +  + D +A                  
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 83  -----PIFHYNEVEG-----GEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 141
                P F Y+EV+      G  ECA+CLCE E+ E  R M  C HVFH DC+D W   +
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]
BLAST of CSPI01G23070 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-12
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 47  SAKSDREELSENLDIEAPIFHYNEVEGG----EQECAICLCEIEEGEKCRKMKTCGHVFH 106
           SA    + L + +  + PIF Y+         ++EC++CL E EE ++ R +  CGH FH
Sbjct: 73  SASPRDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFH 132

Query: 107 KDCIDRWFKVNGHCPICRTSV--CVVVIDRGGNAMASSSSLPT 144
            DCID WF+    CP+CR  V     VI+ G ++ +S  + PT
Sbjct: 133 VDCIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]
BLAST of CSPI01G23070 vs. Swiss-Prot
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1 

Query: 68  YNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTS 123
           +++ EG E  C+ICLCE  E E  R M  C H FH  C+D W K+NG CP+CR S
Sbjct: 126 FHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNS 180

[Close]
BLAST of CSPI01G23070 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 55  LSENLDIEAPIFHYN--EVEGGE-------QECAICLCEIEEGEKCRKMKTCGHVFHKDC 114
           L E+     P+F +   +V  GE       QEC++CL E +E EK R +  C HVFH DC
Sbjct: 102 LDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDC 161

Query: 115 IDRWFKVNGHCPICRTSV 124
           ID W + N +CP+CRTSV
Sbjct: 162 IDIWLQGNANCPLCRTSV 179

[Close]
BLAST of CSPI01G23070 vs. Swiss-Prot
Match: ATL63_ARATH (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1 

Query: 47  SAKSDREELSENLDIEAPIFHYNE---VEGGEQECAICLCEIEEGEKCRKMKTCGHVFHK 106
           +A  D + L  ++    P+F Y E    E  E+EC ICL   E G+  RK++ CGH FH 
Sbjct: 104 TATRDDKGLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHV 163

Query: 107 DCIDRWFKVNGHCPICRTSVCVVVID 130
           +CID W   +  CP+CR+ V   V D
Sbjct: 164 ECIDMWLSSHSTCPLCRSPVLAAVSD 189

[Close]
BLAST of CSPI01G23070 vs. TrEMBL
Match: A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.2e-68
Identity = 131/149 (87.92%), Postives = 136/149 (91.28%), Query Frame = 1 

Query: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60
           MPLSPSP+P LHS ILLPGF M LLT+ MLLLIVLF FI ILC KRSAKSD EEL ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120
           IEAPIFHYN VEG EQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICR
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 130

Query: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 150
           TSVCVVV+D GGNAMASSSSLPTPFIN+I
Sbjct: 131 TSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]
BLAST of CSPI01G23070 vs. TrEMBL
Match: A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.9e-62
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 22  MVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLDIEAPIFHYNEVEGGEQECAIC 81
           MVL+T+SMLLLIVLFLFIAILCTKRSAK D EE S+NLDIEAPIFHY+ VEGGEQEC IC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCVVVIDRGGNAMASSSSL 141
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVC+VVIDRGGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 142 PTPFINRI 150
           PTPFINRI
Sbjct: 121 PTPFINRI 128

[Close]
BLAST of CSPI01G23070 vs. TrEMBL
Match: A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.5e-57
Identity = 114/147 (77.55%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60
           M LSPSPLP LHS ILLP +   LL  SM L IVL LFI+ILC KRSAKSD EE  EN+D
Sbjct: 1   MSLSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVD 60

Query: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120
           IEAPIFHY   EGGEQ+CAICLCEIEEGEKCRKMKTCGHVFHKDCI RWFKV+GHCPICR
Sbjct: 61  IEAPIFHYGGDEGGEQDCAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICR 120

Query: 121 TSVCVVVIDRGGNAMASSSSLPTPFIN 148
           TSVCVVV+DRGGNA+ SS+SL  P++N
Sbjct: 121 TSVCVVVVDRGGNAITSSTSLLIPYMN 147

[Close]
BLAST of CSPI01G23070 vs. TrEMBL
Match: A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.8e-49
Identity = 94/121 (77.69%), Postives = 107/121 (88.43%), Query Frame = 1 

Query: 27  ISMLLLIVLFLFIAILCTKRSAKSDREELSENLDIEAPIFHYNEVEGGEQECAICLCEIE 86
           +SM L IVL  FI+I+C+KR AKSD EEL +N+D+EA +FHYN  EGGEQE AICLCEIE
Sbjct: 2   VSMFLPIVLLFFISIVCSKRFAKSDVEELPKNVDLEALVFHYNGDEGGEQEYAICLCEIE 61

Query: 87  EGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCVVVIDRGGNAMASSSSLPTPFI 146
           EGEKCRKMKTCGHVFHKDCIDRWFKV+ HCPICRTSVCVVV+D GGNAMASS+SLP P++
Sbjct: 62  EGEKCRKMKTCGHVFHKDCIDRWFKVDDHCPICRTSVCVVVVDHGGNAMASSTSLPIPYM 121

Query: 147 N 148
           N
Sbjct: 122 N 122

[Close]
BLAST of CSPI01G23070 vs. TrEMBL
Match: A0A0A0M0G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G513470 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.3e-44
Identity = 106/149 (71.14%), Postives = 108/149 (72.48%), Query Frame = 1 

Query: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60
           MPLSPSPL PLHSPILL GFFMVLLTISML LIVLFLFI ILCTKRSAK D EEL ENLD
Sbjct: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLD 60

Query: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120
           IEAPIFHY  VEG EQE                           C DRWFKV+GHCPI R
Sbjct: 61  IEAPIFHYIGVEGSEQEY--------------------------CTDRWFKVDGHCPIYR 120

Query: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 150
           T VCVVV+DRGG AMASSSSLPTPFINRI
Sbjct: 121 TFVCVVVVDRGGIAMASSSSLPTPFINRI 123

[Close]
BLAST of CSPI01G23070 vs. TAIR10
Match: AT2G35000.1 (AT2G35000.1 RING/U-box superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-14
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 1 

Query: 23  VLLTISMLLLIVLFL-FIAILCTKRSAKSDREELSENLDIEA------------------ 82
           V++ I++L L++ F+ F +I C + +A+  R  +  + D +A                  
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 83  -----PIFHYNEVEG-----GEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 141
                P F Y+EV+      G  ECA+CLCE E+ E  R M  C HVFH DC+D W   +
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]
BLAST of CSPI01G23070 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-13
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 47  SAKSDREELSENLDIEAPIFHYNEVEGG----EQECAICLCEIEEGEKCRKMKTCGHVFH 106
           SA    + L + +  + PIF Y+         ++EC++CL E EE ++ R +  CGH FH
Sbjct: 73  SASPRDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFH 132

Query: 107 KDCIDRWFKVNGHCPICRTSV--CVVVIDRGGNAMASSSSLPT 144
            DCID WF+    CP+CR  V     VI+ G ++ +S  + PT
Sbjct: 133 VDCIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]
BLAST of CSPI01G23070 vs. TAIR10
Match: AT3G61550.1 (AT3G61550.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1 

Query: 68  YNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTS 123
           +++ EG E  C+ICLCE  E E  R M  C H FH  C+D W K+NG CP+CR S
Sbjct: 126 FHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNS 180

[Close]
BLAST of CSPI01G23070 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 55  LSENLDIEAPIFHYN--EVEGGE-------QECAICLCEIEEGEKCRKMKTCGHVFHKDC 114
           L E+     P+F +   +V  GE       QEC++CL E +E EK R +  C HVFH DC
Sbjct: 102 LDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDC 161

Query: 115 IDRWFKVNGHCPICRTSV 124
           ID W + N +CP+CRTSV
Sbjct: 162 IDIWLQGNANCPLCRTSV 179

[Close]
BLAST of CSPI01G23070 vs. TAIR10
Match: AT5G58580.1 (AT5G58580.1 TOXICOS EN LEVADURA 63)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1 

Query: 47  SAKSDREELSENLDIEAPIFHYNE---VEGGEQECAICLCEIEEGEKCRKMKTCGHVFHK 106
           +A  D + L  ++    P+F Y E    E  E+EC ICL   E G+  RK++ CGH FH 
Sbjct: 104 TATRDDKGLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHV 163

Query: 107 DCIDRWFKVNGHCPICRTSVCVVVID 130
           +CID W   +  CP+CR+ V   V D
Sbjct: 164 ECIDMWLSSHSTCPLCRSPVLAAVSD 189

[Close]
BLAST of CSPI01G23070 vs. NCBI nr
Match: gi|778730799|ref|XP_011659858.1| (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 5.9e-79
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60
           MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60

Query: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120
           IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR
Sbjct: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 150
           TSVCVVVIDRGGNAMASSSSLPTPFINRI
Sbjct: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 149

[Close]
BLAST of CSPI01G23070 vs. NCBI nr
Match: gi|778665201|ref|XP_011648512.1| (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 7.4e-74
Identity = 139/149 (93.29%), Postives = 144/149 (96.64%), Query Frame = 1 

Query: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60
           MPLSPSPLPPLHSPILLPGFFMVL+T+SMLLLIVLFLFIAILCTKRSAK D EE S+NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120
           IEAPIFHY+ VEGGEQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR
Sbjct: 61  IEAPIFHYSGVEGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

Query: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 150
           TSVC+VVIDRGGNAMASSSSLPTPFINRI
Sbjct: 121 TSVCMVVIDRGGNAMASSSSLPTPFINRI 149

[Close]
BLAST of CSPI01G23070 vs. NCBI nr
Match: gi|700189546|gb|KGN44779.1| (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 1.0e-67
Identity = 131/149 (87.92%), Postives = 136/149 (91.28%), Query Frame = 1 

Query: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60
           MPLSPSP+P LHS ILLPGF M LLT+ MLLLIVLF FI ILC KRSAKSD EEL ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120
           IEAPIFHYN VEG EQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICR
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 130

Query: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 150
           TSVCVVV+D GGNAMASSSSLPTPFIN+I
Sbjct: 131 TSVCVVVVDHGGNAMASSSSLPTPFINQI 159

[Close]
BLAST of CSPI01G23070 vs. NCBI nr
Match: gi|778730386|ref|XP_011659772.1| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 1.0e-67
Identity = 131/149 (87.92%), Postives = 136/149 (91.28%), Query Frame = 1 

Query: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLD 60
           MPLSPSP+P LHS ILLPGF M LLT+ MLLLIVLF FI ILC KRSAKSD EEL ENLD
Sbjct: 1   MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 60

Query: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120
           IEAPIFHYN VEG EQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICR
Sbjct: 61  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 120

Query: 121 TSVCVVVIDRGGNAMASSSSLPTPFINRI 150
           TSVCVVV+D GGNAMASSSSLPTPFIN+I
Sbjct: 121 TSVCVVVVDHGGNAMASSSSLPTPFINQI 149

[Close]
BLAST of CSPI01G23070 vs. NCBI nr
Match: gi|700210619|gb|KGN65715.1| (hypothetical protein Csa_1G512470 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 8.5e-62
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 22  MVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLDIEAPIFHYNEVEGGEQECAIC 81
           MVL+T+SMLLLIVLFLFIAILCTKRSAK D EE S+NLDIEAPIFHY+ VEGGEQEC IC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCVVVIDRGGNAMASSSSL 141
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVC+VVIDRGGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 142 PTPFINRI 150
           PTPFINRI
Sbjct: 121 PTPFINRI 128

The following BLAST results are available for this feature:
BLAST of CSPI01G23070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL9_ARATH1.6e-1231.29E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1[more]
ATL64_ARATH8.1e-1235.92RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
ATL68_ARATH2.3e-1150.91RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1[more]
ATL1_ARATH2.3e-1144.87RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1[more]
ATL63_ARATH2.3e-1139.53RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1[more]
BLAST of CSPI01G23070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K790_CUCSA7.2e-6887.92Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1[more]
A0A0A0LUU6_CUCSA5.9e-6292.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1[more]
A0A0A0LY10_CUCSA7.5e-5777.55Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1[more]
A0A0A0LY13_CUCSA5.8e-4977.69Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1[more]
A0A0A0M0G7_CUCSA3.3e-4471.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G513470 PE=4 SV=1[more]
BLAST of CSPI01G23070 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35000.19.2e-1431.29 RING/U-box superfamily protein[more]
AT2G47560.14.5e-1335.92 RING/U-box superfamily protein[more]
AT3G61550.11.3e-1250.91 RING/U-box superfamily protein[more]
AT1G04360.11.3e-1244.87 RING/U-box superfamily protein[more]
AT5G58580.11.3e-1239.53 TOXICOS EN LEVADURA 63[more]
BLAST of CSPI01G23070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730799|ref|XP_011659858.1|5.9e-79100.00PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus][more]
gi|778665201|ref|XP_011648512.1|7.4e-7493.29PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus][more]
gi|700189546|gb|KGN44779.1|1.0e-6787.92hypothetical protein Csa_7G387140 [Cucumis sativus][more]
gi|778730386|ref|XP_011659772.1|1.0e-6787.92PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|700210619|gb|KGN65715.1|8.5e-6292.19hypothetical protein Csa_1G512470 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23070.1CSPI01G23070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 76..120
score: 1.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 78..119
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 78..120
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 75..123
score: 3.1
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 2..146
score: 1.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 69..126
score: 6.13

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23070Cla97C03G052440Watermelon (97103) v2cpiwmbB044
CSPI01G23070Bhi08G000521Wax gourdcpiwgoB048
CSPI01G23070Cucsa.117910Cucumber (Gy14) v1cgycpiB153
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23070Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23070Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23070Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23070Cucurbita maxima (Rimu)cmacpiB544
CSPI01G23070Cucurbita maxima (Rimu)cmacpiB585
CSPI01G23070Cucurbita maxima (Rimu)cmacpiB696
CSPI01G23070Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23070Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23070Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23070Cucurbita moschata (Rifu)cmocpiB573
CSPI01G23070Cucurbita moschata (Rifu)cmocpiB811
CSPI01G23070Cucumber (Chinese Long) v2cpicuB001
CSPI01G23070Cucumber (Chinese Long) v2cpicuB028
CSPI01G23070Cucumber (Chinese Long) v2cpicuB032
CSPI01G23070Cucumber (Chinese Long) v2cpicuB047
CSPI01G23070Melon (DHL92) v3.5.1cpimeB003
CSPI01G23070Melon (DHL92) v3.5.1cpimeB008
CSPI01G23070Melon (DHL92) v3.5.1cpimeB025
CSPI01G23070Melon (DHL92) v3.5.1cpimeB065
CSPI01G23070Melon (DHL92) v3.5.1cpimeB084
CSPI01G23070Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23070Watermelon (Charleston Gray)cpiwcgB034
CSPI01G23070Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23070Watermelon (Charleston Gray)cpiwcgB062
CSPI01G23070Watermelon (97103) v1cpiwmB004
CSPI01G23070Watermelon (97103) v1cpiwmB023
CSPI01G23070Watermelon (97103) v1cpiwmB069
CSPI01G23070Watermelon (97103) v1cpiwmB075
CSPI01G23070Cucurbita pepo (Zucchini)cpecpiB267
CSPI01G23070Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23070Cucurbita pepo (Zucchini)cpecpiB536
CSPI01G23070Cucurbita pepo (Zucchini)cpecpiB704
CSPI01G23070Bottle gourd (USVL1VR-Ls)cpilsiB002
CSPI01G23070Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23070Melon (DHL92) v3.6.1cpimedB007
CSPI01G23070Melon (DHL92) v3.6.1cpimedB024
CSPI01G23070Melon (DHL92) v3.6.1cpimedB057
CSPI01G23070Cucumber (Gy14) v2cgybcpiB002
CSPI01G23070Cucumber (Gy14) v2cgybcpiB097
CSPI01G23070Cucumber (Gy14) v2cgybcpiB159
CSPI01G23070Cucumber (Gy14) v2cgybcpiB252
CSPI01G23070Silver-seed gourdcarcpiB0177
CSPI01G23070Silver-seed gourdcarcpiB0336
CSPI01G23070Silver-seed gourdcarcpiB0363
CSPI01G23070Silver-seed gourdcarcpiB0415
CSPI01G23070Silver-seed gourdcarcpiB0476
CSPI01G23070Silver-seed gourdcarcpiB1034
CSPI01G23070Cucumber (Chinese Long) v3cpicucB032
CSPI01G23070Cucumber (Chinese Long) v3cpicucB000
CSPI01G23070Cucumber (Chinese Long) v3cpicucB037
CSPI01G23070Cucumber (Chinese Long) v3cpicucB055
CSPI01G23070Watermelon (97103) v2cpiwmbB015
CSPI01G23070Watermelon (97103) v2cpiwmbB027
CSPI01G23070Watermelon (97103) v2cpiwmbB058
CSPI01G23070Wax gourdcpiwgoB018
CSPI01G23070Wild cucumber (PI 183967)cpicpiB024
CSPI01G23070Wild cucumber (PI 183967)cpicpiB019
CSPI01G23070Wild cucumber (PI 183967)cpicpiB043
CSPI01G23070Cucumber (Gy14) v1cgycpiB053
CSPI01G23070Cucumber (Gy14) v1cgycpiB277