CSPI01G23050 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23050
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 18714439 .. 18714885 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCTTGTTTGTGAGCGTCATTTGTATCATTGTAATCATCTTCCTTTTCCATTTCTACCATTACCGCCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGAACGACTCTACGAACACCGTACAACGCAACTCTTTACTCAAGTTCAAGCCCAAATCGTAATGCAACGTCAGACTAGAACCAATAACACGATGGAAGGCGAAGAACCTTCTTCTGCTATCATGACGGTGGCTTACACAGTGAAGGATGAAGCCGGCTCGTACTGTTGCTGTGCCATATACATCGAAGAGTTTTGTGGAGTTGTTGAGAGTTGTGGCCATTGTTTTCATATGGATTGTATGGATCACTGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGAAGCTTAG

mRNA sequence

ATGGGAATCTTGTTTGTGAGCGTCATTTGTATCATTGTAATCATCTTCCTTTTCCATTTCTACCATTACCGCCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGAACGACTCTACGAACACCGTACAACGCAACTCTTTACTCAAGTTCAAGCCCAAATCGTAATGCAACGTCAGACTAGAACCAATAACACGATGGAAGGCGAAGAACCTTCTTCTGCTATCATGACGGTGGCTTACACAGTGAAGGATGAAGCCGGCTCGTACTGTTGCTGTGCCATATACATCGAAGAGTTTTGTGGAGTTGTTGAGAGTTGTGGCCATTGTTTTCATATGGATTGTATGGATCACTGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGAAGCTTAG

Coding sequence (CDS)

ATGGGAATCTTGTTTGTGAGCGTCATTTGTATCATTGTAATCATCTTCCTTTTCCATTTCTACCATTACCGCCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGAACGACTCTACGAACACCGTACAACGCAACTCTTTACTCAAGTTCAAGCCCAAATCGTAATGCAACGTCAGACTAGAACCAATAACACGATGGAAGGCGAAGAACCTTCTTCTGCTATCATGACGGTGGCTTACACAGTGAAGGATGAAGCCGGCTCGTACTGTTGCTGTGCCATATACATCGAAGAGTTTTGTGGAGTTGTTGAGAGTTGTGGCCATTGTTTTCATATGGATTGTATGGATCACTGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGAAGCTTAG
Homology
[Close]
BLAST of CSPI01G23050 vs. TrEMBL
Match: W5I3V9_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 75  AIMTVAYTVKD-EAGSYCCCAIYIEEFCG-----VVESCGHCFHMDCMDHWLKIESRCPL 134
           AI   A T  D E    CCC++ +++F       V+  C H FH+ C+D+WL+  + CPL
Sbjct: 179 AIRFSAATGSDQETDESCCCSVCLQDFGSCQFVRVLPQCQHIFHVPCIDNWLQRNASCPL 238

Query: 135 CRCLVHAVSH 139
           CRC VH V H
Sbjct: 239 CRCGVHIVDH 248

[Close]
BLAST of CSPI01G23050 vs. TrEMBL
Match: W5H659_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-06
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 1 

Query: 86  EAGSYCCCAIYIEEFCG-----VVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSH 139
           E    CCC++ +++F        +  C H FH+ C+D+WL+  + CPLCRC VH V H
Sbjct: 190 ETDESCCCSVCLQDFASRQYVRALPQCRHIFHVPCIDNWLQRNASCPLCRCGVHIVDH 247

[Close]
BLAST of CSPI01G23050 vs. TrEMBL
Match: K3Z9V0_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_023321mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 

Query: 89  SYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS 138
           S C  A+   E   V+  CGHCFH DC+D WL+ ++ CPLCRCL+ A +
Sbjct: 133 SICISALVAGEKVKVLPPCGHCFHPDCVDAWLRSQASCPLCRCLLLAAT 181

[Close]
BLAST of CSPI01G23050 vs. TAIR10
Match: AT4G10160.1 (AT4G10160.1 RING/U-box superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.3e-07
Identity = 23/51 (45.10%), Postives = 29/51 (56.86%), Query Frame = 1 

Query: 80  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR 131
           ++TV D   S C      EE    + SCGH FHM+C+D WL   + CPLCR
Sbjct: 89  SFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCR 139

[Close]
BLAST of CSPI01G23050 vs. TAIR10
Match: AT4G10150.1 (AT4G10150.1 RING/U-box superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.3e-07
Identity = 23/51 (45.10%), Postives = 29/51 (56.86%), Query Frame = 1 

Query: 80  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR 131
           ++ VKD   S C      EE    + SCGH FHM+C+D WL   + CPLCR
Sbjct: 103 SFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCR 153

[Close]
BLAST of CSPI01G23050 vs. TAIR10
Match: AT5G07040.1 (AT5G07040.1 RING/U-box superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 19/42 (45.24%), Postives = 23/42 (54.76%), Query Frame = 1 

Query: 89  SYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR 131
           S C C     E    +  C HCFH DC+D WL+  + CPLCR
Sbjct: 95  SICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCR 136

[Close]
BLAST of CSPI01G23050 vs. TAIR10
Match: AT3G11110.1 (AT3G11110.1 RING/U-box superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 23/56 (41.07%), Postives = 30/56 (53.57%), Query Frame = 1 

Query: 84  KDEAGSYCCCAIYIEEF--CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS 138
           ++E    C C    EE     V+  C HC+H +C+D WLK ES CPLCR  +   S
Sbjct: 101 EEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDS 156

[Close]
BLAST of CSPI01G23050 vs. TAIR10
Match: AT2G44581.1 (AT2G44581.1 RING/U-box superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.1e-06
Identity = 24/60 (40.00%), Postives = 33/60 (55.00%), Query Frame = 1 

Query: 82  TVKDEAGSYCCCAIYIE-----EFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAV 137
           T  +E  S   C I +E     E    + +C HCFH+DC+D WL+ +S CPLCR  +  V
Sbjct: 59  TTAEEKHSSPYCTICLENATEGEKMRRIAACSHCFHVDCIDPWLEKKSMCPLCRAEIPPV 118

[Close]
BLAST of CSPI01G23050 vs. NCBI nr
Match: gi|659115454|ref|XP_008457565.1| (PREDICTED: E3 ubiquitin-protein ligase RNF149 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-07
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 

Query: 91  CCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLV 134
           C     +EE  GV+E+CGH FH DC++ WL IE RCPLCRC V
Sbjct: 43  CIEGFGVEEIGGVIENCGHFFHRDCINRWLTIERRCPLCRCFV 85

The following BLAST results are available for this feature:
BLAST of CSPI01G23050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G23050 vs. TrEMBL
Match NameE-valueIdentityDescription
W5I3V9_WHEAT2.7e-0641.43Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
W5H659_WHEAT4.6e-0639.66Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
K3Z9V0_SETIT7.8e-0648.98Uncharacterized protein OS=Setaria italica GN=SETIT_023321mg PE=4 SV=1[more]
BLAST of CSPI01G23050 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10160.18.3e-0745.10 RING/U-box superfamily protein[more]
AT4G10150.18.3e-0745.10 RING/U-box superfamily protein[more]
AT5G07040.11.4e-0645.24 RING/U-box superfamily protein[more]
AT3G11110.11.4e-0641.07 RING/U-box superfamily protein[more]
AT2G44581.14.1e-0640.00 RING/U-box superfamily protein[more]
BLAST of CSPI01G23050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115454|ref|XP_008457565.1|7.8e-0758.14PREDICTED: E3 ubiquitin-protein ligase RNF149 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR024766Znf_RING_H2
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23050.1CSPI01G23050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 92..130
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 92..139
score: 4.
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 98..130
score: 9.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 92..136
score: 2.05

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23050Cla008243Watermelon (97103) v1cpiwmB023
CSPI01G23050MELO3C020634Melon (DHL92) v3.5.1cpimeB025
CSPI01G23050ClCG03G001520Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23050MELO3C020634.2Melon (DHL92) v3.6.1cpimedB024
CSPI01G23050Bhi08G000526Wax gourdcpiwgoB048
CSPI01G23050Cucsa.117940Cucumber (Gy14) v1cgycpiB153
CSPI01G23050CmaCh13G001280Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23050CmoCh13G001260Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23050CsGy1G022610Cucumber (Gy14) v2cgybcpiB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23050Cucumber (Chinese Long) v3cpicucB032
CSPI01G23050Cucumber (Chinese Long) v3cpicucB000
CSPI01G23050Cucumber (Chinese Long) v3cpicucB037
CSPI01G23050Cucumber (Chinese Long) v3cpicucB055
CSPI01G23050Watermelon (97103) v2cpiwmbB015
CSPI01G23050Watermelon (97103) v2cpiwmbB027
CSPI01G23050Watermelon (97103) v2cpiwmbB044
CSPI01G23050Watermelon (97103) v2cpiwmbB058
CSPI01G23050Wax gourdcpiwgoB018
CSPI01G23050Wild cucumber (PI 183967)cpicpiB024
CSPI01G23050Wild cucumber (PI 183967)cpicpiB019
CSPI01G23050Wild cucumber (PI 183967)cpicpiB043
CSPI01G23050Cucumber (Gy14) v1cgycpiB053
CSPI01G23050Cucumber (Gy14) v1cgycpiB277
CSPI01G23050Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23050Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23050Cucurbita maxima (Rimu)cmacpiB544
CSPI01G23050Cucurbita maxima (Rimu)cmacpiB585
CSPI01G23050Cucurbita maxima (Rimu)cmacpiB696
CSPI01G23050Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23050Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23050Cucurbita moschata (Rifu)cmocpiB573
CSPI01G23050Cucurbita moschata (Rifu)cmocpiB811
CSPI01G23050Cucumber (Chinese Long) v2cpicuB001
CSPI01G23050Cucumber (Chinese Long) v2cpicuB028
CSPI01G23050Cucumber (Chinese Long) v2cpicuB032
CSPI01G23050Cucumber (Chinese Long) v2cpicuB047
CSPI01G23050Melon (DHL92) v3.5.1cpimeB003
CSPI01G23050Melon (DHL92) v3.5.1cpimeB008
CSPI01G23050Melon (DHL92) v3.5.1cpimeB065
CSPI01G23050Melon (DHL92) v3.5.1cpimeB084
CSPI01G23050Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23050Watermelon (Charleston Gray)cpiwcgB034
CSPI01G23050Watermelon (Charleston Gray)cpiwcgB062
CSPI01G23050Watermelon (97103) v1cpiwmB004
CSPI01G23050Watermelon (97103) v1cpiwmB069
CSPI01G23050Watermelon (97103) v1cpiwmB075
CSPI01G23050Cucurbita pepo (Zucchini)cpecpiB267
CSPI01G23050Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23050Cucurbita pepo (Zucchini)cpecpiB536
CSPI01G23050Cucurbita pepo (Zucchini)cpecpiB704
CSPI01G23050Bottle gourd (USVL1VR-Ls)cpilsiB002
CSPI01G23050Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23050Melon (DHL92) v3.6.1cpimedB007
CSPI01G23050Melon (DHL92) v3.6.1cpimedB057
CSPI01G23050Cucumber (Gy14) v2cgybcpiB097
CSPI01G23050Cucumber (Gy14) v2cgybcpiB159
CSPI01G23050Cucumber (Gy14) v2cgybcpiB252
CSPI01G23050Silver-seed gourdcarcpiB0177
CSPI01G23050Silver-seed gourdcarcpiB0336
CSPI01G23050Silver-seed gourdcarcpiB0363
CSPI01G23050Silver-seed gourdcarcpiB0415
CSPI01G23050Silver-seed gourdcarcpiB0476
CSPI01G23050Silver-seed gourdcarcpiB1034