CSPI01G18650 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G18650
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Plant/F18B13-26 protein
Location	Chr1 : 14059181 .. 14059837 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAACCAACACCAAAAAGAAAGAACATAAAAAACATAACAAAAAAACGGTAAGAAGTACCATATTCTTGCATTGTTTGATCTTGTTATTGGATCTACGATTTTAGAATCAACATGGCGGAGTTGCAAAGGTCCGCCGTGTCGTTCCGGCGACAGGGTTCCTCCGGCTTGGTGTGGGACGACAGATTCTTGAGCGGCGAATTGAAACCGACCACGAAGCGCCTCCATGAAGACCAACACAACGTTGTTTTTCTTTCCGGTGAGTTGAGGCCTTCTCGAAGCGTCAGATCCGGCGGTGCCCCTACATTTGAACGACACCGATCTTCTGCCGCATATAAAATGGACACAATATCACCGTCACCGTCGCCGTCGCCGAGCAGGGGAGATCCATCCTCACCAAAGTTCGTCGGCTGTGGATTCTGCGGCGTGTTTGGTCGCCCCGTCGGCGGAAATCGCCAACACAAATCTAACAAGCGTCGATCGGAGTAATTCTATTTTTATTAATTTTCATCCAATTTTTCTTTTTGTTTTTTTGTTTTTGTTTTTCAACAATCGGAATTATGGAATGTTTATTTGGAAAAGAAGAAATTACCGGAAGAAACAAAATGGAATTGAATCTGAAAATGAAATGAAAAATCCAAATTTGTTTTGTTTTC

mRNA sequence

ATGGCGGAGTTGCAAAGGTCCGCCGTGTCGTTCCGGCGACAGGGTTCCTCCGGCTTGGTGTGGGACGACAGATTCTTGAGCGGCGAATTGAAACCGACCACGAAGCGCCTCCATGAAGACCAACACAACGTTGTTTTTCTTTCCGGTGAGTTGAGGCCTTCTCGAAGCGTCAGATCCGGCGGTGCCCCTACATTTGAACGACACCGATCTTCTGCCGCATATAAAATGGACACAATATCACCGTCACCGTCGCCGTCGCCGAGCAGGGGAGATCCATCCTCACCAAAGTTCGTCGGCTGTGGATTCTGCGGCGTGTTTGGTCGCCCCGTCGGCGGAAATCGCCAACACAAATCTAACAAGCGTCGATCGGAGTAA

Coding sequence (CDS)

ATGGCGGAGTTGCAAAGGTCCGCCGTGTCGTTCCGGCGACAGGGTTCCTCCGGCTTGGTGTGGGACGACAGATTCTTGAGCGGCGAATTGAAACCGACCACGAAGCGCCTCCATGAAGACCAACACAACGTTGTTTTTCTTTCCGGTGAGTTGAGGCCTTCTCGAAGCGTCAGATCCGGCGGTGCCCCTACATTTGAACGACACCGATCTTCTGCCGCATATAAAATGGACACAATATCACCGTCACCGTCGCCGTCGCCGAGCAGGGGAGATCCATCCTCACCAAAGTTCGTCGGCTGTGGATTCTGCGGCGTGTTTGGTCGCCCCGTCGGCGGAAATCGCCAACACAAATCTAACAAGCGTCGATCGGAGTAA

Homology

[Close]

BLAST of CSPI01G18650 vs. Swiss-Prot
Match: Y1540_ARATH (Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 51/142 (35.92%), Postives = 69/142 (48.59%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFL-----SGELKPTTKRLHEDQHNVVFLSGE----- 60
           M  LQRS +SFRRQGSSG+V+DDR +     SG  +   +   ++Q   +  S E     
Sbjct: 1   MEGLQRSTISFRRQGSSGIVFDDRLIAELNKSGNNEQKDESQRDEQPKPMSESSEQVKPI 60

Query: 61  -----LRPSRSVRSGGAP-TFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFVGCGFCG 120
                LRP ++   GGAP   ER RS+          +   SP+  DP SP+   CG C 
Sbjct: 61  DEKDKLRPIKT--GGGAPGGIERSRSNGGGAQRHHRTTGRVSPA-VDPPSPRISSCGCCS 120

Query: 121 VFGRPVGG---NRQHKSNKRRS 124
            FG+   G   N + +  KRRS
Sbjct: 121 AFGKNPPGKKVNPRKRPPKRRS 139

[Close]

BLAST of CSPI01G18650 vs. TrEMBL
Match: A0A0A0LTQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G308810 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG 60
           MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG
Sbjct: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG 60

Query: 61  GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPVGGNRQHKSNK 120
           GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKF GCGFCGVFGRPVGGNRQHKSNK
Sbjct: 61  GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFAGCGFCGVFGRPVGGNRQHKSNK 120

Query: 121 RRSE 125
           RRSE
Sbjct: 121 RRSE 124

[Close]

BLAST of CSPI01G18650 vs. TrEMBL
Match: A0A0A0KYE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004870 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-16
Identity = 58/126 (46.03%), Postives = 71/126 (56.35%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPT-TKRLHEDQHNVVFLSGELRPSRSVRS 60
           M  LQRSAVSFRRQGSSGLVWDDRFLSGELK T T    E + N          + +   
Sbjct: 1   MEGLQRSAVSFRRQGSSGLVWDDRFLSGELKQTATTSEKESEENQDQGKSTAAAAAAAVE 60

Query: 61  GGAPTFERHRSSA--AYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPVGGNRQHK 120
             + T ER RS+    Y+   +SP+        +P SPK   CGFC  FG+P   +R+ K
Sbjct: 61  PISITIERSRSNGGRGYRTGKVSPAI-------EPPSPKVSACGFCSAFGKPAKKSRRTK 119

Query: 121 SNKRRS 124
           + KRRS
Sbjct: 121 TGKRRS 119

[Close]

BLAST of CSPI01G18650 vs. TrEMBL
Match: B9GWC8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06070g PE=4 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-16
Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGEL-KPTTKRLHE------DQHNVVFLSGELRP 60
           MA LQRSA+SFRRQGSSGLVWDD+ +SGEL K   K+ HE      DQ   + L  ++RP
Sbjct: 1   MAGLQRSAMSFRRQGSSGLVWDDKLISGELNKVNQKQEHEEQEPQHDQKTDIKLENDVRP 60

Query: 61  SRSVRSGGAPTFERHRSSA---AYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPV 120
           +    +  + T ER RS+     Y+   +SP+        +P SPK   CGFCG FG+P 
Sbjct: 61  TSRSSTTPSITIERSRSNGGQRGYRTGRVSPAI-------EPPSPKVSACGFCGAFGKP- 120

Query: 121 GGNRQHKSNKRR 123
             NR+ KS   R
Sbjct: 121 AKNRRKKSEIHR 124

[Close]

BLAST of CSPI01G18650 vs. TrEMBL
Match: B9GKX1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s17190g PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.1e-16
Identity = 59/132 (44.70%), Postives = 74/132 (56.06%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTT-KRLHE-----DQHNVVFLSGELRPS 60
           MA LQRS VSFRRQGSSGL+WDDR++SGEL     K+ HE     DQ   + L  + RPS
Sbjct: 1   MAGLQRSDVSFRRQGSSGLIWDDRYISGELNQVNQKQEHEEQPKRDQRTEIKLENDARPS 60

Query: 61  RSVRSGGAPTFERHRSSA---AYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPVG 120
               +    T ER RS+     Y+   +SP+        +P SPK   CGFCG FG+P G
Sbjct: 61  SRSATTPNITIERSRSNGGQRGYRTGRVSPAI-------EPPSPKVFTCGFCGAFGKP-G 120

Query: 121 GNRQHKSNKRRS 124
            N + K+   RS
Sbjct: 121 KNHRKKAVIGRS 124

[Close]

BLAST of CSPI01G18650 vs. TrEMBL
Match: G7JVC7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g114050 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 55/123 (44.72%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG 60
           MAELQ+S  SFRRQGSSGLVWDD+FLSG        L+++Q     L  E        S 
Sbjct: 1   MAELQKSLASFRRQGSSGLVWDDKFLSG--------LNQNQ-----LEQE--------SA 60

Query: 61  GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPVGGNRQHKSNK 120
              T ER RS+ A    +++ +P+      DP SPK   CGFCG+FG+PV  +  HKSN 
Sbjct: 61  STGTLERSRSAGARPYRSVNVAPTSI----DPPSPKVATCGFCGLFGKPVAASSAHKSNN 98

Query: 121 RRS 124
            +S
Sbjct: 121 PKS 98

[Close]

BLAST of CSPI01G18650 vs. TAIR10
Match: AT5G20100.1 (AT5G20100.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 45/124 (36.29%), Postives = 61/124 (49.19%), Query Frame = 1


Query: 4   LQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLH--EDQHNVVFLSGELRPSRSVRSGG 63
           LQRS  SFRRQGSSGL+W+DRFLSGE++   ++     D  +    +      RS   GG
Sbjct: 3   LQRSTASFRRQGSSGLIWNDRFLSGEIRNDERQEDRCNDHRDGSMAATTATVKRSASDGG 62

Query: 64  APTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKF--VGCGFCGVFGRPVGGNRQHKSN 123
                        ++  +SP+        DP SPK   VGCGFC +F     G R+ +  
Sbjct: 63  C--------GHGGRLGELSPAL-------DPPSPKISAVGCGFCSLFSS--NGKRRSRGR 109

[Close]

BLAST of CSPI01G18650 vs. TAIR10
Match: AT1G15400.3 (AT1G15400.3 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 51/142 (35.92%), Postives = 69/142 (48.59%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFL-----SGELKPTTKRLHEDQHNVVFLSGE----- 60
           M  LQRS +SFRRQGSSG+V+DDR +     SG  +   +   ++Q   +  S E     
Sbjct: 1   MEGLQRSTISFRRQGSSGIVFDDRLIAELNKSGNNEQKDESQRDEQPKPMSESSEQVKPI 60

Query: 61  -----LRPSRSVRSGGAP-TFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFVGCGFCG 120
                LRP ++   GGAP   ER RS+          +   SP+  DP SP+   CG C 
Sbjct: 61  DEKDKLRPIKT--GGGAPGGIERSRSNGGGAQRHHRTTGRVSPA-VDPPSPRISSCGCCS 120

Query: 121 VFGRPVGG---NRQHKSNKRRS 124
            FG+   G   N + +  KRRS
Sbjct: 121 AFGKNPPGKKVNPRKRPPKRRS 139

[Close]

BLAST of CSPI01G18650 vs. TAIR10
Match: AT1G80180.1 (AT1G80180.1 unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 49/149 (32.89%), Postives = 66/149 (44.30%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFL-------SGELKPTTKRLHE----------DQHN 60
           MA LQRS +SFRRQGSSG+VWDDR +       + + K  T +  E          DQ  
Sbjct: 1   MAGLQRSTISFRRQGSSGIVWDDRLIAELSQQAANDRKGETLQQDEQAKLITSEVQDQTT 60

Query: 61  VVFLSGELRPSRS------VRSGGAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKF 120
                  L+P R+       RS G      HR++       +SP+        DP SP+ 
Sbjct: 61  KPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTG-----RVSPAV-------DPPSPRL 120

Query: 121 VGCGFCGVFGRPVGG---NRQHKSNKRRS 124
              G C  FG+   G   N++ +  KRRS
Sbjct: 121 SAFGCCSAFGKKQPGKKVNQRKRPAKRRS 137

[Close]

BLAST of CSPI01G18650 vs. NCBI nr
Match: gi|449467793|ref|XP_004151607.1| (PREDICTED: uncharacterized protein At1g15400 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG 60
           MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG
Sbjct: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG 60

Query: 61  GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPVGGNRQHKSNK 120
           GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKF GCGFCGVFGRPVGGNRQHKSNK
Sbjct: 61  GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFAGCGFCGVFGRPVGGNRQHKSNK 120

Query: 121 RRSE 125
           RRSE
Sbjct: 121 RRSE 124

[Close]

BLAST of CSPI01G18650 vs. NCBI nr
Match: gi|659130156|ref|XP_008465027.1| (PREDICTED: uncharacterized protein At1g15400 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 9.3e-54
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPTTKRLHEDQHNVVFLSGELRPSRSVRSG 60
           MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPT KR HEDQHNVVFLSGELRPSR V SG
Sbjct: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPT-KRFHEDQHNVVFLSGELRPSRRVGSG 60

Query: 61  GAPTFERHRSSAAYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPVGGNRQHKSNK 120
           G P+FER RSS AYKMD I  SPSP PSRGDPSSPKF GCGFCGVFGRPVGGNRQHKSNK
Sbjct: 61  GGPSFERTRSSGAYKMDAI--SPSPPPSRGDPSSPKFAGCGFCGVFGRPVGGNRQHKSNK 120

Query: 121 RRS 124
           RRS
Sbjct: 121 RRS 120

[Close]

BLAST of CSPI01G18650 vs. NCBI nr
Match: gi|743893602|ref|XP_011040039.1| (PREDICTED: uncharacterized protein At1g15400 [Populus euphratica])

HSP 1 Score: 95.1 bits (235), Expect = 9.1e-17
Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGEL-KPTTKRLHE------DQHNVVFLSGELRP 60
           MA LQRSAVSFRRQGSSGLVWDD+ +SGEL K   K+ HE      DQ   + L  ++RP
Sbjct: 1   MAGLQRSAVSFRRQGSSGLVWDDKLISGELNKVNQKQEHEEQELQHDQKTDIKLENDVRP 60

Query: 61  SRSVRSGGAPTFERHRSSA---AYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPV 120
           + S  S  + T ER RS+     Y+   +SP+        +P SPK   CGFCG FG+P 
Sbjct: 61  T-SRSSTPSITIERSRSNGGQRGYRTGRVSPAI-------EPPSPKVSACGFCGAFGKP- 120

Query: 121 GGNRQHKSNKRRS 124
             NR+ K+ K RS
Sbjct: 121 AKNRRKKAGKGRS 124

[Close]

BLAST of CSPI01G18650 vs. NCBI nr
Match: gi|778697409|ref|XP_011654316.1| (PREDICTED: uncharacterized protein At1g15400-like [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 4.5e-16
Identity = 58/126 (46.03%), Postives = 71/126 (56.35%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGELKPT-TKRLHEDQHNVVFLSGELRPSRSVRS 60
           M  LQRSAVSFRRQGSSGLVWDDRFLSGELK T T    E + N          + +   
Sbjct: 1   MEGLQRSAVSFRRQGSSGLVWDDRFLSGELKQTATTSEKESEENQDQGKSTAAAAAAAVE 60

Query: 61  GGAPTFERHRSSA--AYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPVGGNRQHK 120
             + T ER RS+    Y+   +SP+        +P SPK   CGFC  FG+P   +R+ K
Sbjct: 61  PISITIERSRSNGGRGYRTGKVSPAI-------EPPSPKVSACGFCSAFGKPAKKSRRTK 119

Query: 121 SNKRRS 124
           + KRRS
Sbjct: 121 TGKRRS 119

[Close]

BLAST of CSPI01G18650 vs. NCBI nr
Match: gi|566161116|ref|XP_002304148.2| (hypothetical protein POPTR_0003s06070g [Populus trichocarpa])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-16
Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 1


Query: 1   MAELQRSAVSFRRQGSSGLVWDDRFLSGEL-KPTTKRLHE------DQHNVVFLSGELRP 60
           MA LQRSA+SFRRQGSSGLVWDD+ +SGEL K   K+ HE      DQ   + L  ++RP
Sbjct: 1   MAGLQRSAMSFRRQGSSGLVWDDKLISGELNKVNQKQEHEEQEPQHDQKTDIKLENDVRP 60

Query: 61  SRSVRSGGAPTFERHRSSA---AYKMDTISPSPSPSPSRGDPSSPKFVGCGFCGVFGRPV 120
           +    +  + T ER RS+     Y+   +SP+        +P SPK   CGFCG FG+P 
Sbjct: 61  TSRSSTTPSITIERSRSNGGQRGYRTGRVSPAI-------EPPSPKVSACGFCGAFGKP- 120

Query: 121 GGNRQHKSNKRR 123
             NR+ KS   R
Sbjct: 121 AKNRRKKSEIHR 124

The following BLAST results are available for this feature:

BLAST of CSPI01G18650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1540_ARATH	2.0e-08	35.92	Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2	[more]

BLAST of CSPI01G18650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTQ5_CUCSA	1.1e-64	99.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G308810 PE=4 SV=1	[more]
A0A0A0KYE3_CUCSA	3.1e-16	46.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004870 PE=4 SV=1	[more]
B9GWC8_POPTR	4.1e-16	44.70	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06070g PE=4 SV=2	[more]
B9GKX1_POPTR	9.1e-16	44.70	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s17190g PE=4 SV=1	[more]
G7JVC7_MEDTR	5.9e-15	44.72	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g114050 PE=2 SV=1	[more]

BLAST of CSPI01G18650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20100.1	1.6e-11	36.29	unknown protein	[more]
AT1G15400.3	1.1e-09	35.92	unknown protein	[more]
AT1G80180.1	2.5e-09	32.89	unknown protein	[more]

BLAST of CSPI01G18650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467793\|ref\|XP_004151607.1\|	1.5e-64	99.19	PREDICTED: uncharacterized protein At1g15400 [Cucumis sativus]	[more]
gi\|659130156\|ref\|XP_008465027.1\|	9.3e-54	89.43	PREDICTED: uncharacterized protein At1g15400 [Cucumis melo]	[more]
gi\|743893602\|ref\|XP_011040039.1\|	9.1e-17	47.37	PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]	[more]
gi\|778697409\|ref\|XP_011654316.1\|	4.5e-16	46.03	PREDICTED: uncharacterized protein At1g15400-like [Cucumis sativus]	[more]
gi\|566161116\|ref\|XP_002304148.2\|	5.9e-16	44.70	hypothetical protein POPTR_0003s06070g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G18650.1	CSPI01G18650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33730	FAMILY NOT NAMED	coord: 1..122 score: 3.7
None	No IPR available	PANTHER	PTHR33730:SF4	SUBFAMILY NOT NAMED	coord: 1..122 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G18650	Cla012261	Watermelon (97103) v1	cpiwmB088
CSPI01G18650	Csa1G308810	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G18650	MELO3C026647	Melon (DHL92) v3.5.1	cpimeB060
CSPI01G18650	MELO3C023405	Melon (DHL92) v3.5.1	cpimeB041
CSPI01G18650	ClCG06G010950	Watermelon (Charleston Gray)	cpiwcgB073
CSPI01G18650	Lsi06G009510	Bottle gourd (USVL1VR-Ls)	cpilsiB061
CSPI01G18650	MELO3C026647.2	Melon (DHL92) v3.6.1	cpimedB054
CSPI01G18650	CsaV3_7G032570	Cucumber (Chinese Long) v3	cpicucB065
CSPI01G18650	CsaV3_1G029830	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G18650	Cla97C06G120160	Watermelon (97103) v2	cpiwmbB070
CSPI01G18650	CmaCh10G005610	Cucurbita maxima (Rimu)	cmacpiB064
CSPI01G18650	CmaCh11G005680	Cucurbita maxima (Rimu)	cmacpiB088
CSPI01G18650	CmoCh11G005700	Cucurbita moschata (Rifu)	cmocpiB082
CSPI01G18650	CmoCh10G006030	Cucurbita moschata (Rifu)	cmocpiB054
CSPI01G18650	Cp4.1LG04g09560	Cucurbita pepo (Zucchini)	cpecpiB661
CSPI01G18650	Cp4.1LG18g04640	Cucurbita pepo (Zucchini)	cpecpiB355
CSPI01G18650	CsGy1G018650	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G18650	Carg09903	Silver-seed gourd	carcpiB0139
CSPI01G18650	Carg12151	Silver-seed gourd	carcpiB0036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G18650	Melon (DHL92) v3.6.1	cpimedB068
CSPI01G18650	Cucumber (Gy14) v2	cgybcpiB051
CSPI01G18650	Silver-seed gourd	carcpiB0042
CSPI01G18650	Silver-seed gourd	carcpiB0600
CSPI01G18650	Cucumber (Chinese Long) v3	cpicucB021
CSPI01G18650	Watermelon (97103) v2	cpiwmbB019
CSPI01G18650	Wax gourd	cpiwgoB002
CSPI01G18650	Wax gourd	cpiwgoB103
CSPI01G18650	Wild cucumber (PI 183967)	cpicpiB007
CSPI01G18650	Cucumber (Gy14) v1	cgycpiB185
CSPI01G18650	Cucurbita maxima (Rimu)	cmacpiB108
CSPI01G18650	Cucurbita maxima (Rimu)	cmacpiB791
CSPI01G18650	Cucurbita moschata (Rifu)	cmocpiB100
CSPI01G18650	Cucumber (Chinese Long) v2	cpicuB016
CSPI01G18650	Melon (DHL92) v3.5.1	cpimeB076
CSPI01G18650	Watermelon (Charleston Gray)	cpiwcgB008
CSPI01G18650	Watermelon (97103) v1	cpiwmB083
CSPI01G18650	Cucurbita pepo (Zucchini)	cpecpiB091
CSPI01G18650	Cucurbita pepo (Zucchini)	cpecpiB647
CSPI01G18650	Bottle gourd (USVL1VR-Ls)	cpilsiB009