CSPI01G16540 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G16540
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	NAC domain-containing protein 78
Location	Chr1 : 12089137 .. 12090283 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTATACCTTTTGTCCGACGGACGAAGAATTATTATGTTATTATCTTTATCACAAAGTAGTTGGGGGTTTCGTACCACCAATTATGTTATCTGTCGTAGACATTTATACAAAAGAACCTCCTCAAATATGGCAACAATGTGGAGGGGTTGATGGTCAGGATGTTCATTTCTTCACTTGTCTTAAAAAGAAAAAGTCTCGTGTTGTGAGGAAAGTTGGTCCCAATGGAGCCACATGGAGTGGTGAAAGCAAAGCAACCAAAGTGTTTTCTCACAATAATACTTTGGTTGGTGATTTTAAACGGTTTCATTATGAAAATCCTAAAATGAAGAAGGGTGGTCATCATAACAATAATTACTCATGGATCATGTATGAGTACACTCTTCACCCTAATCTTGTACCTGAAGGAGTTGTACACGACTCTTTTGTACTGTGTATGCTTCGAAAGAAGATCTTGAAACAAGATAAAAGAGCATTCTCTGCAATAAAACAAACATCATCTTGTCTTGATTGGCCAAACACGACGAAAGCGACAACAACGCAATTGGAAGTACACATTGATGATCTGAATACTAAACGCAGAAGAGTGGAGGAACAAATTTGCATTGATAGGGTTGAAGACGATTGTTTCATCAATATCGAACGATTTGGTGAACAACTTTTGAACGGATACAATTTGGAAGAACCACCCCAACTTCTTCCAGAGAGGTACGTAAAACAATTTGGTTTAAGAAATTTAAGAGTTTTATTAGTTCGTAATGCTCTTTAAAAATATTTTAATTTTTCTTACAGTCGAGCAATGCAAATGGAACCGTGGTCGAAAGATAACACACTTCGTGAAATATGGTAGGTACAAATTAAAACATATTTTTATTTTTGTAATTATCGATCAAACAGTTTCTTCATTTTTTCTTTTATTCCAATTATCTTTTAAAGATTTTAATCTTGTATATATATGAAATTATATTATAATGGTCTTTTATACTACTGATCAAATGTTTTTAACAATGCTTCTAACGAAAGACTTTGCTCTTTCTTATAGTCCAACAATGGAGACTGAAGCACCCGAACAAAATTATTTAACTGGAGATGAAGATGCATTATTATTTGCAAGGGAGCTCGAGATGTCACTTGAACAACAATGA

mRNA sequence

ATGGGCTATACCTTTTGTCCGACGGACGAAGAATTATTATGTTATTATCTTTATCACAAAGTAGTTGGGGGTTTCGTACCACCAATTATGTTATCTGTCGTAGACATTTATACAAAAGAACCTCCTCAAATATGGCAACAATGTGGAGGGGTTGATGGTCAGGATGTTCATTTCTTCACTTGTCTTAAAAAGAAAAAGTCTCGTGTTGTGAGGAAAGTTGGTCCCAATGGAGCCACATGGAGTGGTGAAAGCAAAGCAACCAAAGTGTTTTCTCACAATAATACTTTGGTTGGTGATTTTAAACGGTTTCATTATGAAAATCCTAAAATGAAGAAGGGTGGTCATCATAACAATAATTACTCATGGATCATGTATGAGTACACTCTTCACCCTAATCTTGTACCTGAAGGAGTTGTACACGACTCTTTTGTACTGTGTATGCTTCGAAAGAAGATCTTGAAACAAGATAAAAGAGCATTCTCTGCAATAAAACAAACATCATCTTGTCTTGATTGGCCAAACACGACGAAAGCGACAACAACGCAATTGGAAGTACACATTGATGATCTGAATACTAAACGCAGAAGAGTGGAGGAACAAATTTGCATTGATAGGGTTGAAGACGATTGTTTCATCAATATCGAACGATTTGGTGAACAACTTTTGAACGGATACAATTTGGAAGAACCACCCCAACTTCTTCCAGAGAGTCGAGCAATGCAAATGGAACCGTGGTCGAAAGATAACACACTTCGTGAAATATGTCCAACAATGGAGACTGAAGCACCCGAACAAAATTATTTAACTGGAGATGAAGATGCATTATTATTTGCAAGGGAGCTCGAGATGTCACTTGAACAACAATGA

Coding sequence (CDS)

ATGGGCTATACCTTTTGTCCGACGGACGAAGAATTATTATGTTATTATCTTTATCACAAAGTAGTTGGGGGTTTCGTACCACCAATTATGTTATCTGTCGTAGACATTTATACAAAAGAACCTCCTCAAATATGGCAACAATGTGGAGGGGTTGATGGTCAGGATGTTCATTTCTTCACTTGTCTTAAAAAGAAAAAGTCTCGTGTTGTGAGGAAAGTTGGTCCCAATGGAGCCACATGGAGTGGTGAAAGCAAAGCAACCAAAGTGTTTTCTCACAATAATACTTTGGTTGGTGATTTTAAACGGTTTCATTATGAAAATCCTAAAATGAAGAAGGGTGGTCATCATAACAATAATTACTCATGGATCATGTATGAGTACACTCTTCACCCTAATCTTGTACCTGAAGGAGTTGTACACGACTCTTTTGTACTGTGTATGCTTCGAAAGAAGATCTTGAAACAAGATAAAAGAGCATTCTCTGCAATAAAACAAACATCATCTTGTCTTGATTGGCCAAACACGACGAAAGCGACAACAACGCAATTGGAAGTACACATTGATGATCTGAATACTAAACGCAGAAGAGTGGAGGAACAAATTTGCATTGATAGGGTTGAAGACGATTGTTTCATCAATATCGAACGATTTGGTGAACAACTTTTGAACGGATACAATTTGGAAGAACCACCCCAACTTCTTCCAGAGAGTCGAGCAATGCAAATGGAACCGTGGTCGAAAGATAACACACTTCGTGAAATATGTCCAACAATGGAGACTGAAGCACCCGAACAAAATTATTTAACTGGAGATGAAGATGCATTATTATTTGCAAGGGAGCTCGAGATGTCACTTGAACAACAATGA

Homology

[Close]

BLAST of CSPI01G16540 vs. Swiss-Prot
Match: NC101_ARATH (NAC domain-containing protein 101 OS=Arabidopsis thaliana GN=NAC101 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.2e-09
Identity = 55/158 (34.81%), Postives = 73/158 (46.20%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQ--DVHFF 61
           GY F PTDEEL+ YYL +KV    +   ++  VD+Y  EP  I + CG   G+  + +FF
Sbjct: 10  GYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVDLYKIEPWDIQELCGRGTGEEREWYFF 69

Query: 62  TCLKKKKSRVVRKVGPNGATWSGESKAT---KVFSHNNTLVGDFKRFHYENPKMKKGGHH 121
           +   KK     R    N AT SG  KAT   K       LVG  K   +   +   G   
Sbjct: 70  SHKDKKYPTGTR---TNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGRAPNG--- 129

Query: 122 NNNYSWIMYEYTLHPNLVPEGVVH-DSFVLCMLRKKIL 154
                WIM+EY L  +    G  H + +V+C   KK L
Sbjct: 130 -QKSDWIMHEYRLETD--ENGPPHEEGWVVCRAFKKKL 158

[Close]

BLAST of CSPI01G16540 vs. Swiss-Prot
Match: NAC59_ARATH (NAC domain-containing protein 59 OS=Arabidopsis thaliana GN=NAC59 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-07
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQI-WQQCGGVDGQDVHFFT 61
           G+ F PTDEEL+ +YL  KVV  F   I +  VD+   EP  + W+      G+   +F 
Sbjct: 27  GFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVDLNKVEPWDLPWK---AKLGEKEWYFF 86

Query: 62  CLKKKKSRVVRKVGPNGATWSGESKAT---KVFSHNNTLVGDFKRFHYENPKMKKGGHHN 121
           C++ +K     +   N AT +G  KAT   K      +LVG  K   +   +  KG   N
Sbjct: 87  CVRDRKYPTGLRT--NRATKAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTN 146

Query: 122 NNYSWIMYEYTL 130
               W+M+EY L
Sbjct: 147 ----WVMHEYRL 149

[Close]

BLAST of CSPI01G16540 vs. Swiss-Prot
Match: NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-06
Identity = 44/155 (28.39%), Postives = 74/155 (47.74%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTC 61
           G+ F PTDEEL+ +YL  K+  G +  I +S VD+   EP ++  +   +  ++ +F++ 
Sbjct: 25  GFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWEL-PEMAKMGEREWYFYSL 84

Query: 62  LKKKKSRVVRKVGPNGATWSGESKAT----KVFS-HNNTLVGDFKRFHYENPKMKKGGHH 121
             +K    +R    N AT +G  KAT    +VFS     LVG  K   +   +  +G   
Sbjct: 85  RDRKYPTGLR---TNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRG--- 144

Query: 122 NNNYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKK 152
                W+M+EY L  +        + +V+C +  K
Sbjct: 145 -LKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNK 171

[Close]

BLAST of CSPI01G16540 vs. TrEMBL
Match: A0A0A0LWA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 8.2e-169
Identity = 286/288 (99.31%), Postives = 286/288 (99.31%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT 60
           MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT
Sbjct: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT 60

Query: 61  CLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 120
           CLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY
Sbjct: 61  CLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 120

Query: 121 SWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKATT 180
           SWIMYEYTLHPNLVPEGVVH SFVL MLRKKILKQDKRAFSAIKQTSSCLDWPNTTKATT
Sbjct: 121 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKATT 180

Query: 181 TQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLLPESRAM 240
           TQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLLPESRAM
Sbjct: 181 TQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLLPESRAM 240

Query: 241 QMEPWSKDNTLREICPTMETEAPEQNYLTGDEDALLFARELEMSLEQQ 289
           QMEPWSKDNTLREICPTMETEAPEQNYLTGDEDALLFARELEMSLEQQ
Sbjct: 241 QMEPWSKDNTLREICPTMETEAPEQNYLTGDEDALLFARELEMSLEQQ 288

[Close]

BLAST of CSPI01G16540 vs. TrEMBL
Match: A0A0A0L807_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 7.1e-96
Identity = 170/195 (87.18%), Postives = 174/195 (89.23%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKV--VGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHF 60
           MGY FCPTDEELLCYYLYHK+  VGGF+PPIML VVDIYTKE  QIWQQC GV GQDVHF
Sbjct: 8   MGYIFCPTDEELLCYYLYHKITIVGGFIPPIMLPVVDIYTKESSQIWQQCRGVHGQDVHF 67

Query: 61  FTCLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNN 120
           F CLKKKKS  VRKVGPNGA WSGESKATKVFSHNNTLVG FK FHYENPKMKK GHHNN
Sbjct: 68  FICLKKKKSCAVRKVGPNGAIWSGESKATKVFSHNNTLVGAFKLFHYENPKMKKDGHHNN 127

Query: 121 NYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKA 180
           NYSWIMYEYTLHPNLVPEGVVH SFVL MLRKKILKQDKRAFSA KQT SC+DWPNTT A
Sbjct: 128 NYSWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSATKQTFSCIDWPNTTTA 187

Query: 181 TTTQLEVHIDDLNTK 194
           TTTQLEVH+DD NTK
Sbjct: 188 TTTQLEVHVDDPNTK 202

[Close]

BLAST of CSPI01G16540 vs. TrEMBL
Match: V4S8B0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013622mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.0e-22
Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPI--MLSVVDIY-TKEPPQIWQQCGG---VDGQ 60
           +G  F P+D +L+ +YL++K+ G   P +   +   ++Y  KEP QIW+Q GG    DG+
Sbjct: 7   LGCKFQPSDGQLVLFYLFNKISGTPAPFLDDFVRTENLYGNKEPWQIWRQFGGHDLEDGE 66

Query: 61  DVHFFTCLKKKK---SRVVRKVGPNGATWSGESKATKVFSHNNTL-VGDFKRFHYENPKM 120
           D++FFT LKKK    SR+ R+VG    TW GE     V S N+   +G  KRF YE  K 
Sbjct: 67  DLYFFTHLKKKSVNSSRIDRRVGTG--TWQGEDVGKAVVSRNSRKKIGSKKRFRYEKDKS 126

Query: 121 KKGGHHNNNYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKR 159
              G       WIM+EY+L+P+L+P+ +     VLC +RK + K++KR
Sbjct: 127 PHNG------CWIMHEYSLNPSLLPQNLQSSDLVLCRIRKNVGKENKR 166

[Close]

BLAST of CSPI01G16540 vs. TrEMBL
Match: A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 64/163 (39.26%), Postives = 95/163 (58.28%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVV---DIYTK-EPPQIWQQCGGVDGQDV 60
           +G  F PTD++LL +YL+ K+ G    P     V   D+Y   EP +IWQ  GG+DG+D+
Sbjct: 16  VGVKFRPTDQQLL-HYLHCKIYG---QPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDL 75

Query: 61  HFFTCLKKK-------KSRVVRKVGPNGATWSGESKATKVF--SHNNTLVGDFKRFHYEN 120
           +FFT LK+         + + RK+G    TWSGE+ A+ ++    +  ++G  KRF YEN
Sbjct: 76  YFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYEN 135

Query: 121 PKMKKGGHHNNNYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRK 151
              ++  HH     WIM+EY LHPN + EG V  ++VLC +R+
Sbjct: 136 ESSEE--HHG---EWIMHEYNLHPNYLCEG-VDPNYVLCRIRR 168

[Close]

BLAST of CSPI01G16540 vs. TrEMBL
Match: A0A067DD92_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047622mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPI--MLSVVDIYT-KEPPQIWQQCGGVD---GQ 60
           +G  F P+DE L+ +YL++K+ G   P +  ++   ++Y  KEP QIW+Q GG D   G+
Sbjct: 10  LGCKFQPSDELLVQFYLFNKISGTPAPFVDDLVRTENLYGFKEPWQIWRQFGGPDLEDGE 69

Query: 61  DVHFFTCLKKKK---SRVVRKVGPNGATWSGESKATKVFSHNNTL-VGDFKRFHYENPKM 120
           D++FFT LKKK    SR+ R+VG    TW GE     V S  +   +G  KRF YE  K 
Sbjct: 70  DLYFFTPLKKKSVNGSRIDRRVGTG--TWQGEDAGKAVVSRKSKKKIGSKKRFRYEKDKS 129

Query: 121 KKGGHHNNNYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRK 151
              G       WIM+EY+L+P+L+P+ +     VLC +RK
Sbjct: 130 PHNG------CWIMHEYSLNPSLLPQNLRSSDLVLCRIRK 161

[Close]

BLAST of CSPI01G16540 vs. TAIR10
Match: AT5G62380.1 (AT5G62380.1 NAC-domain protein 101)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 55/158 (34.81%), Postives = 73/158 (46.20%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQ--DVHFF 61
           GY F PTDEEL+ YYL +KV    +   ++  VD+Y  EP  I + CG   G+  + +FF
Sbjct: 10  GYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVDLYKIEPWDIQELCGRGTGEEREWYFF 69

Query: 62  TCLKKKKSRVVRKVGPNGATWSGESKAT---KVFSHNNTLVGDFKRFHYENPKMKKGGHH 121
           +   KK     R    N AT SG  KAT   K       LVG  K   +   +   G   
Sbjct: 70  SHKDKKYPTGTR---TNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGRAPNG--- 129

Query: 122 NNNYSWIMYEYTLHPNLVPEGVVH-DSFVLCMLRKKIL 154
                WIM+EY L  +    G  H + +V+C   KK L
Sbjct: 130 -QKSDWIMHEYRLETD--ENGPPHEEGWVVCRAFKKKL 158

[Close]

BLAST of CSPI01G16540 vs. TAIR10
Match: AT3G10490.2 (AT3G10490.2 NAC domain containing protein 52)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 51/157 (32.48%), Postives = 75/157 (47.77%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEP--PQIWQQCGGVDGQDVHFF 61
           G+ F PTDEEL+ YYL  KV+G  V    +  VDIY  EP    ++ +    D Q+ +F+
Sbjct: 30  GFRFHPTDEELVSYYLKRKVLGQPVRFDAIGEVDIYKHEPWDLAVFSRLKTRD-QEWYFY 89

Query: 62  TCLKKKKSRVVRKVGPNGATWSGESKAT---KVFSHNNTLVGDFKRFHYENPKMKKGGHH 121
           + L KK     R    N AT  G  KAT   +    +  L+G  K   + + +   G   
Sbjct: 90  SALDKKYGNGARM---NRATNRGYWKATGKDREIRRDILLLGMKKTLVFHSGRAPDGLRT 149

Query: 122 NNNYSWIMYEYTL--HPNLVPEGVVHDSFVLCMLRKK 152
           N    W+M+EY L  +       +V D++VLC +  K
Sbjct: 150 N----WVMHEYRLVEYETEKNGNLVQDAYVLCRVFHK 178

[Close]

BLAST of CSPI01G16540 vs. TAIR10
Match: AT3G29035.1 (AT3G29035.1 NAC domain containing protein 3)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-08
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQI-WQQCGGVDGQDVHFFT 61
           G+ F PTDEEL+ +YL  KVV  F   I +  VD+   EP  + W+      G+   +F 
Sbjct: 27  GFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVDLNKVEPWDLPWK---AKLGEKEWYFF 86

Query: 62  CLKKKKSRVVRKVGPNGATWSGESKAT---KVFSHNNTLVGDFKRFHYENPKMKKGGHHN 121
           C++ +K     +   N AT +G  KAT   K      +LVG  K   +   +  KG   N
Sbjct: 87  CVRDRKYPTGLRT--NRATKAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTN 146

Query: 122 NNYSWIMYEYTL 130
               W+M+EY L
Sbjct: 147 ----WVMHEYRL 149

[Close]

BLAST of CSPI01G16540 vs. TAIR10
Match: AT1G76420.1 (AT1G76420.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-07
Identity = 44/155 (28.39%), Postives = 74/155 (47.74%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTC 61
           G+ F PTDEEL+ +YL  K+  G +  I +S VD+   EP ++  +   +  ++ +F++ 
Sbjct: 25  GFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWEL-PEMAKMGEREWYFYSL 84

Query: 62  LKKKKSRVVRKVGPNGATWSGESKAT----KVFS-HNNTLVGDFKRFHYENPKMKKGGHH 121
             +K    +R    N AT +G  KAT    +VFS     LVG  K   +   +  +G   
Sbjct: 85  RDRKYPTGLR---TNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRG--- 144

Query: 122 NNNYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKK 152
                W+M+EY L  +        + +V+C +  K
Sbjct: 145 -LKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNK 171

[Close]

BLAST of CSPI01G16540 vs. TAIR10
Match: AT3G10480.3 (AT3G10480.3 NAC domain containing protein 50)

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 52/189 (27.51%), Postives = 76/189 (40.21%), Query Frame = 1


Query: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQ-------------- 61
           G+ F PTDEEL+ YYL  KV+G  V    +  VDIY  EP  + ++              
Sbjct: 30  GFRFHPTDEELVSYYLKRKVLGKPVRFDAIGEVDIYKHEPWDLAEKILCSYLALNCFKNF 89

Query: 62  ----------CGGV----------DGQDVHFFTCLKKKKSRVVRKVGPNGATWSGESKAT 121
                     C  V            Q+ +FF+ L KK     R    N AT  G  KAT
Sbjct: 90  VFACATVMFACATVMFALFSKLKTRDQEWYFFSALDKKYGNGARM---NRATNKGYWKAT 149

Query: 122 ---KVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNYSWIMYEYTL--HPNLVPEGVVHDS 152
              +    +  L+G  K   + + +   G   N    W+M+EY L  +       ++ D+
Sbjct: 150 GKDREIRRDIQLLGMKKTLVFHSGRAPDGLRTN----WVMHEYRLVEYETETNGSLLQDA 209

[Close]

BLAST of CSPI01G16540 vs. NCBI nr
Match: gi|700210011|gb|KGN65107.1| (hypothetical protein Csa_1G224380 [Cucumis sativus])

HSP 1 Score: 600.9 bits (1548), Expect = 1.2e-168
Identity = 286/288 (99.31%), Postives = 286/288 (99.31%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT 60
           MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT
Sbjct: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT 60

Query: 61  CLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 120
           CLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY
Sbjct: 61  CLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 120

Query: 121 SWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKATT 180
           SWIMYEYTLHPNLVPEGVVH SFVL MLRKKILKQDKRAFSAIKQTSSCLDWPNTTKATT
Sbjct: 121 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKATT 180

Query: 181 TQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLLPESRAM 240
           TQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLLPESRAM
Sbjct: 181 TQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLLPESRAM 240

Query: 241 QMEPWSKDNTLREICPTMETEAPEQNYLTGDEDALLFARELEMSLEQQ 289
           QMEPWSKDNTLREICPTMETEAPEQNYLTGDEDALLFARELEMSLEQQ
Sbjct: 241 QMEPWSKDNTLREICPTMETEAPEQNYLTGDEDALLFARELEMSLEQQ 288

[Close]

BLAST of CSPI01G16540 vs. NCBI nr
Match: gi|700201123|gb|KGN56256.1| (hypothetical protein Csa_3G110040 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 1.0e-95
Identity = 170/195 (87.18%), Postives = 174/195 (89.23%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKV--VGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHF 60
           MGY FCPTDEELLCYYLYHK+  VGGF+PPIML VVDIYTKE  QIWQQC GV GQDVHF
Sbjct: 8   MGYIFCPTDEELLCYYLYHKITIVGGFIPPIMLPVVDIYTKESSQIWQQCRGVHGQDVHF 67

Query: 61  FTCLKKKKSRVVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNN 120
           F CLKKKKS  VRKVGPNGA WSGESKATKVFSHNNTLVG FK FHYENPKMKK GHHNN
Sbjct: 68  FICLKKKKSCAVRKVGPNGAIWSGESKATKVFSHNNTLVGAFKLFHYENPKMKKDGHHNN 127

Query: 121 NYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKA 180
           NYSWIMYEYTLHPNLVPEGVVH SFVL MLRKKILKQDKRAFSA KQT SC+DWPNTT A
Sbjct: 128 NYSWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSATKQTFSCIDWPNTTTA 187

Query: 181 TTTQLEVHIDDLNTK 194
           TTTQLEVH+DD NTK
Sbjct: 188 TTTQLEVHVDDPNTK 202

[Close]

BLAST of CSPI01G16540 vs. NCBI nr
Match: gi|778664815|ref|XP_011660358.1| (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 107/209 (51.20%), Postives = 153/209 (73.21%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT 60
           +GY FCPT+EELL YYLY KV+G    P++L V+D+YT+EP QIWQQC GVD +D++FFT
Sbjct: 8   VGYVFCPTEEELLGYYLYSKVLGEQASPLVLPVIDLYTQEPSQIWQQCRGVDNKDIYFFT 67

Query: 61  CLKKKKSRVVRKVGPNGATWSGESKATKVFSH--NNTLVGDFKRFHYENPKMKKGGHHNN 120
            L+KKKSR++RKVG NG TWSGE+K  +VFS   +N L+G  KRF YE  ++K+      
Sbjct: 68  TLQKKKSRIIRKVGSNGGTWSGENKPQQVFSSTIDNLLLGTMKRFRYEKSQVKE------ 127

Query: 121 NYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKA 180
           + +WIMYEYTL+P +VPEG+VHDS+VLCM+RKKI+K +K   ++ K+ +S  +WP T+  
Sbjct: 128 DCTWIMYEYTLNPFIVPEGLVHDSYVLCMIRKKIVKSEKMVMASNKRRASNNNWPMTS-- 187

Query: 181 TTTQLEVHIDDLNTKRRRVEEQICIDRVE 208
                 +H+D+ N KR +++E+  +D ++
Sbjct: 188 ------MHVDNQNHKRMKLQEEAVVDCID 202

[Close]

BLAST of CSPI01G16540 vs. NCBI nr
Match: gi|659085728|ref|XP_008443570.1| (PREDICTED: NAC domain-containing protein 55-like [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 2.3e-55
Identity = 112/215 (52.09%), Postives = 153/215 (71.16%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT 60
           +G+TFCPTDEELL YYL++KV+G   P + L V+D+Y  EP +IWQ+CGGVD QDV+FFT
Sbjct: 8   LGFTFCPTDEELLGYYLFNKVLGEQAPLLELPVIDLYIHEPSEIWQKCGGVDKQDVYFFT 67

Query: 61  CLKKKKSRVVRKVGPNGATWSGESKATKVFSH--NNTLVGDFKRFHYENPKMKKGGHHNN 120
            LKKKKSR++RKVG NG TWS E++A +VFS   ++ L+G  KRFHY+ PK  K     N
Sbjct: 68  TLKKKKSRIIRKVGSNGNTWSCENRARQVFSSTIDHLLLGSVKRFHYQKPK-AKDCTDIN 127

Query: 121 NYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKA 180
           + +WIMYEYTL P++VP+G+VHDS+VLCM+RKKI+K  K   ++ K+  S  +WP T+  
Sbjct: 128 DCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKIVKSQKIVMTSKKRQISS-NWPTTS-- 187

Query: 181 TTTQLEVHIDDLNTKRRRVEEQICIDRVEDDCFIN 214
                 +H+DD   K RR+EE   +D  ++ C I+
Sbjct: 188 ------MHVDDQTHKHRRLEENDVVDLQKEYCCID 212

[Close]

BLAST of CSPI01G16540 vs. NCBI nr
Match: gi|567875797|ref|XP_006430488.1| (hypothetical protein CICLE_v10013622mg, partial [Citrus clementina])

HSP 1 Score: 113.6 bits (283), Expect = 5.7e-22
Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 1


Query: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPI--MLSVVDIY-TKEPPQIWQQCGG---VDGQ 60
           +G  F P+D +L+ +YL++K+ G   P +   +   ++Y  KEP QIW+Q GG    DG+
Sbjct: 7   LGCKFQPSDGQLVLFYLFNKISGTPAPFLDDFVRTENLYGNKEPWQIWRQFGGHDLEDGE 66

Query: 61  DVHFFTCLKKKK---SRVVRKVGPNGATWSGESKATKVFSHNNTL-VGDFKRFHYENPKM 120
           D++FFT LKKK    SR+ R+VG    TW GE     V S N+   +G  KRF YE  K 
Sbjct: 67  DLYFFTHLKKKSVNSSRIDRRVGTG--TWQGEDVGKAVVSRNSRKKIGSKKRFRYEKDKS 126

Query: 121 KKGGHHNNNYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKR 159
              G       WIM+EY+L+P+L+P+ +     VLC +RK + K++KR
Sbjct: 127 PHNG------CWIMHEYSLNPSLLPQNLQSSDLVLCRIRKNVGKENKR 166

The following BLAST results are available for this feature:

BLAST of CSPI01G16540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NC101_ARATH	7.2e-09	34.81	NAC domain-containing protein 101 OS=Arabidopsis thaliana GN=NAC101 PE=2 SV=1	[more]
NAC59_ARATH	8.8e-07	33.33	NAC domain-containing protein 59 OS=Arabidopsis thaliana GN=NAC59 PE=1 SV=1	[more]
NAC31_ARATH	4.4e-06	28.39	Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1	[more]

BLAST of CSPI01G16540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWA5_CUCSA	8.2e-169	99.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1	[more]
A0A0A0L807_CUCSA	7.1e-96	87.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1	[more]
V4S8B0_9ROSI	4.0e-22	39.88	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013622mg PE=...	[more]
A0A0A0LFJ5_CUCSA	6.3e-20	39.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1	[more]
A0A067DD92_CITSI	1.1e-19	40.00	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047622mg PE=4 S...	[more]

BLAST of CSPI01G16540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62380.1	4.1e-10	34.81	NAC-domain protein 101	[more]
AT3G10490.2	1.7e-08	32.48	NAC domain containing protein 52	[more]
AT3G29035.1	5.0e-08	33.33	NAC domain containing protein 3	[more]
AT1G76420.1	2.5e-07	28.39	NAC (No Apical Meristem) domain transcriptional regulator superfamil...	[more]
AT3G10480.3	3.6e-06	27.51	NAC domain containing protein 50	[more]

BLAST of CSPI01G16540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210011\|gb\|KGN65107.1\|	1.2e-168	99.31	hypothetical protein Csa_1G224380 [Cucumis sativus]	[more]
gi\|700201123\|gb\|KGN56256.1\|	1.0e-95	87.18	hypothetical protein Csa_3G110040 [Cucumis sativus]	[more]
gi\|778664815\|ref\|XP_011660358.1\|	2.7e-56	51.20	PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus]	[more]
gi\|659085728\|ref\|XP_008443570.1\|	2.3e-55	52.09	PREDICTED: NAC domain-containing protein 55-like [Cucumis melo]	[more]
gi\|567875797\|ref\|XP_006430488.1\|	5.7e-22	39.88	hypothetical protein CICLE_v10013622mg, partial [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003441	NAC-dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G16540.1	CSPI01G16540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 2..129 score: 5.5
IPR003441	NAC domain	PROFILE	PS51005	NAC	coord: 1..151 score: 23
IPR003441	NAC domain	unknown	SSF101941	NAC domain	coord: 2..151 score: 7.59
None	No IPR available	unknown	Coil	Coil	coord: 180..200 scor
None	No IPR available	PANTHER	PTHR31719	FAMILY NOT NAMED	coord: 1..151 score: 6.5
None	No IPR available	PANTHER	PTHR31719:SF10	SUBFAMILY NOT NAMED	coord: 1..151 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G16540	Csa1G224380	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G16540	CsaV3_1G027970	Cucumber (Chinese Long) v3	cpicucB011
CSPI01G16540	Cucsa.249390	Cucumber (Gy14) v1	cgycpiB373
CSPI01G16540	CsGy1G017200	Cucumber (Gy14) v2	cgybcpiB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G16540	Watermelon (97103) v2	cpiwmbB082
CSPI01G16540	Wax gourd	cpiwgoB085
CSPI01G16540	Cucurbita maxima (Rimu)	cmacpiB053
CSPI01G16540	Cucurbita maxima (Rimu)	cmacpiB089
CSPI01G16540	Cucurbita moschata (Rifu)	cmocpiB044
CSPI01G16540	Cucurbita moschata (Rifu)	cmocpiB081
CSPI01G16540	Melon (DHL92) v3.5.1	cpimeB048
CSPI01G16540	Watermelon (Charleston Gray)	cpiwcgB086
CSPI01G16540	Watermelon (97103) v1	cpiwmB102
CSPI01G16540	Cucurbita pepo (Zucchini)	cpecpiB365
CSPI01G16540	Cucurbita pepo (Zucchini)	cpecpiB660
CSPI01G16540	Bottle gourd (USVL1VR-Ls)	cpilsiB074
CSPI01G16540	Melon (DHL92) v3.6.1	cpimedB042
CSPI01G16540	Silver-seed gourd	carcpiB0141