CSPI01G16110 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G16110
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 11608805 .. 11609666 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCCAGGCAAGTATAACTCAGAAAGGGAAAGTTTAAATAGTTGAATATCATATGAGAATTTGAGAATAAAGACAGAAAAATTCAACCCCATCAAAAGTACATAACGCAATAGATGAAAAATCAAAAGTTTTGACTAGGGGAAAATCCAAAGTTTGAACTTGTAACAGATAGTAGAAATTATAGCGTTGTGATTGAGGAACTGAGTAGGAAAGGTCGGCGACGTTCATCGCCGTCGATGAGAAATGGAGTTTGGGGTGTGTGGCTCTGAAGACAGAAACGCAGTTTGGGATGAGAAACGACGTGGGTCGCCGTCAATTAGAAGCAAAGTGAGATTTGGGGCTCCGTTGTTCGCCGTTGATGAGATATGTGGCCAGCCTTTTGGAGGTGGAGATGGAGAGGATTGAGATTGGAGGGGTTGGGATTTCGTGAAGATGTAGAGAGAGGAAATTTCATCGATGAGATATGCGGTCGGTGGTGGGACGCGTCGATACCGTTCGTGCGTGGGTGGTCGGCCAAATGATTCGTTCGTCGTCGTCGGCCGAAATAGTAGTGGTCATGGGTCGATACAAGAAACTTGGATGGGTTTCCTGTGGCTGGCCGGTGGAGTGGTGAAGATTGGGGATGGGTTCTTTGAGAGGGGTTATCGGAAAGAGGTAGAGAGAAAGGGGAAGAAGTGTAGTGGTTTGGGTGAAGTTTGTGAAGAAGATAGAAATCGTGGATGGGAGAGAGATGGAAAATGTAGGTGGAAATTAGGGATTTTATAGAATTTGGAGGGATAAAAGAAAATTTTGGGGAAAAAAAGAGCCAAAAGCTTTTTTTTACAAATCGGAGAAAAATGAAAAATTTGAATAGAAAAAAGAG

mRNA sequence

ATGAGATATGCGGTCGGTGGTGGGACGCGTCGATACCGTTCGTGCGTGGGTGGTCGGCCAAATGATTCGTTCGTCGTCGTCGGCCGAAATAGTAGTGGTCATGGGTCGATACAAGAAACTTGGATGGGTTTCCTGTGGCTGGCCGGTGGAGTGGTGAAGATTGGGGATGGGTTCTTTGAGAGGGGTTATCGGAAAGAGGTAGAGAGAAAGGGGAAGAAGTGTAGTGGTTTGGGTGAAGTTTGTGAAGAAGATAGAAATCGTGGATGGGAGAGAGATGGAAAATGTAGGTGGAAATTAGGGATTTTATAG

Coding sequence (CDS)

ATGAGATATGCGGTCGGTGGTGGGACGCGTCGATACCGTTCGTGCGTGGGTGGTCGGCCAAATGATTCGTTCGTCGTCGTCGGCCGAAATAGTAGTGGTCATGGGTCGATACAAGAAACTTGGATGGGTTTCCTGTGGCTGGCCGGTGGAGTGGTGAAGATTGGGGATGGGTTCTTTGAGAGGGGTTATCGGAAAGAGGTAGAGAGAAAGGGGAAGAAGTGTAGTGGTTTGGGTGAAGTTTGTGAAGAAGATAGAAATCGTGGATGGGAGAGAGATGGAAAATGTAGGTGGAAATTAGGGATTTTATAG

Homology

[Close]

BLAST of CSPI01G16110 vs. TrEMBL
Match: A0A0A0LYN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G192190 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 7.4e-56
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MRYAVGGGTRRYRSCVGGRPNDSFVVVGRNSSGHGSIQETWMGFLWLAGGVVKIGDGFFE 60
           MRYAVGGGTRRYRSCVGGRPNDSFVVVGRNSSGHGSIQETWMGFLWLAGGVVKIGDGFFE
Sbjct: 1   MRYAVGGGTRRYRSCVGGRPNDSFVVVGRNSSGHGSIQETWMGFLWLAGGVVKIGDGFFE 60

Query: 61  RGYRKEVERKGKKCSGLGEVCEEDRNRGWERDGKCRWKLGIL 103
           RGYRKEVERKGKKCSGLGEVCEEDRNRGWERDGKCRWKLGIL
Sbjct: 61  RGYRKEVERKGKKCSGLGEVCEEDRNRGWERDGKCRWKLGIL 102

[Close]

BLAST of CSPI01G16110 vs. NCBI nr
Match: gi|700209975|gb|KGN65071.1| (hypothetical protein Csa_1G192190 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-55
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MRYAVGGGTRRYRSCVGGRPNDSFVVVGRNSSGHGSIQETWMGFLWLAGGVVKIGDGFFE 60
           MRYAVGGGTRRYRSCVGGRPNDSFVVVGRNSSGHGSIQETWMGFLWLAGGVVKIGDGFFE
Sbjct: 1   MRYAVGGGTRRYRSCVGGRPNDSFVVVGRNSSGHGSIQETWMGFLWLAGGVVKIGDGFFE 60

Query: 61  RGYRKEVERKGKKCSGLGEVCEEDRNRGWERDGKCRWKLGIL 103
           RGYRKEVERKGKKCSGLGEVCEEDRNRGWERDGKCRWKLGIL
Sbjct: 61  RGYRKEVERKGKKCSGLGEVCEEDRNRGWERDGKCRWKLGIL 102

The following BLAST results are available for this feature:

BLAST of CSPI01G16110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G16110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYN6_CUCSA	7.4e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G192190 PE=4 SV=1	[more]

BLAST of CSPI01G16110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G16110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209975\|gb\|KGN65071.1\|	1.1e-55	100.00	hypothetical protein Csa_1G192190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G16110.1	CSPI01G16110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G16110	Csa1G192190	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G16110	CsaV3_1G017320	Cucumber (Chinese Long) v3	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G16110	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G16110	Cucurbita moschata (Rifu)	cmocpiB200
CSPI01G16110	Melon (DHL92) v3.5.1	cpimeB018
CSPI01G16110	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G16110	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G16110	Watermelon (97103) v1	cpiwmB050
CSPI01G16110	Watermelon (97103) v1	cpiwmB054
CSPI01G16110	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G16110	Cucurbita pepo (Zucchini)	cpecpiB523
CSPI01G16110	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G16110	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G16110	Melon (DHL92) v3.6.1	cpimedB016
CSPI01G16110	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G16110	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G16110	Silver-seed gourd	carcpiB0435
CSPI01G16110	Silver-seed gourd	carcpiB1073
CSPI01G16110	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G16110	Watermelon (97103) v2	cpiwmbB005
CSPI01G16110	Watermelon (97103) v2	cpiwmbB009
CSPI01G16110	Wax gourd	cpiwgoB036
CSPI01G16110	Wax gourd	cpiwgoB059
CSPI01G16110	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G16110	Cucumber (Gy14) v1	cgycpiB017