CSPI01G03560 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G03560
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 2217114 .. 2217278 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCGGTTCCAACCTCGGGAGAATCAGTGTGATGGTGGTGACGGTGGTGACGGTGATGGTGGTGGTGATGAGGATGATTATCAACATGGAGATGTTGGAGAAAGAGAGTGA

mRNA sequence

ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCGGTTCCAACCTCGGGAGAATCAGTGTGATGGTGGTGACGGTGGTGACGGTGATGGTGGTGGTGATGAGGATGATTATCAACATGGAGATGTTGGAGAAAGAGAGTGA

Coding sequence (CDS)

ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCGGTTCCAACCTCGGGAGAATCAGTGTGATGGTGGTGACGGTGGTGACGGTGATGGTGGTGGTGATGAGGATGATTATCAACATGGAGATGTTGGAGAAAGAGAGTGA
Homology
[Close]
BLAST of CSPI01G03560 vs. TrEMBL
Match: A0A0A0LUT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015880 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 50
          MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD
Sbjct: 1  MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 49

[Close]
BLAST of CSPI01G03560 vs. NCBI nr
Match: gi|700208700|gb|KGN63796.1| (hypothetical protein Csa_1G015880 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 50
          MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD
Sbjct: 1  MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 49

The following BLAST results are available for this feature:
BLAST of CSPI01G03560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G03560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT7_CUCSA2.3e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015880 PE=4 SV=1[more]
BLAST of CSPI01G03560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G03560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208700|gb|KGN63796.1|3.3e-19100.00hypothetical protein Csa_1G015880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03560.1CSPI01G03560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G03560Csa1G015880Cucumber (Chinese Long) v2cpicuB000
CSPI01G03560CsaV3_1G003590Cucumber (Chinese Long) v3cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G03560Silver-seed gourdcarcpiB0497
CSPI01G03560Silver-seed gourdcarcpiB0550
CSPI01G03560Silver-seed gourdcarcpiB0627
CSPI01G03560Silver-seed gourdcarcpiB0628
CSPI01G03560Silver-seed gourdcarcpiB0876
CSPI01G03560Cucumber (Chinese Long) v3cpicucB004
CSPI01G03560Cucumber (Chinese Long) v3cpicucB043
CSPI01G03560Watermelon (97103) v2cpiwmbB057
CSPI01G03560Watermelon (97103) v2cpiwmbB064
CSPI01G03560Watermelon (97103) v2cpiwmbB080
CSPI01G03560Wax gourdcpiwgoB039
CSPI01G03560Wax gourdcpiwgoB072
CSPI01G03560Wax gourdcpiwgoB115
CSPI01G03560Wild cucumber (PI 183967)cpicpiB001
CSPI01G03560Wild cucumber (PI 183967)cpicpiB030
CSPI01G03560Cucumber (Gy14) v1cgycpiB310
CSPI01G03560Cucumber (Gy14) v1cgycpiB428
CSPI01G03560Cucurbita maxima (Rimu)cmacpiB062
CSPI01G03560Cucurbita maxima (Rimu)cmacpiB086
CSPI01G03560Cucurbita maxima (Rimu)cmacpiB106
CSPI01G03560Cucurbita maxima (Rimu)cmacpiB223
CSPI01G03560Cucurbita maxima (Rimu)cmacpiB397
CSPI01G03560Cucurbita maxima (Rimu)cmacpiB408
CSPI01G03560Cucurbita maxima (Rimu)cmacpiB695
CSPI01G03560Cucurbita moschata (Rifu)cmocpiB053
CSPI01G03560Cucurbita moschata (Rifu)cmocpiB079
CSPI01G03560Cucurbita moschata (Rifu)cmocpiB097
CSPI01G03560Cucurbita moschata (Rifu)cmocpiB209
CSPI01G03560Cucurbita moschata (Rifu)cmocpiB394
CSPI01G03560Cucumber (Chinese Long) v2cpicuB006
CSPI01G03560Cucumber (Chinese Long) v2cpicuB038
CSPI01G03560Melon (DHL92) v3.5.1cpimeB006
CSPI01G03560Melon (DHL92) v3.5.1cpimeB029
CSPI01G03560Melon (DHL92) v3.5.1cpimeB056
CSPI01G03560Watermelon (Charleston Gray)cpiwcgB061
CSPI01G03560Watermelon (Charleston Gray)cpiwcgB067
CSPI01G03560Watermelon (Charleston Gray)cpiwcgB084
CSPI01G03560Watermelon (97103) v1cpiwmB040
CSPI01G03560Watermelon (97103) v1cpiwmB068
CSPI01G03560Watermelon (97103) v1cpiwmB100
CSPI01G03560Cucurbita pepo (Zucchini)cpecpiB023
CSPI01G03560Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G03560Cucurbita pepo (Zucchini)cpecpiB381
CSPI01G03560Cucurbita pepo (Zucchini)cpecpiB509
CSPI01G03560Cucurbita pepo (Zucchini)cpecpiB646
CSPI01G03560Bottle gourd (USVL1VR-Ls)cpilsiB025
CSPI01G03560Bottle gourd (USVL1VR-Ls)cpilsiB054
CSPI01G03560Bottle gourd (USVL1VR-Ls)cpilsiB071
CSPI01G03560Melon (DHL92) v3.6.1cpimedB006
CSPI01G03560Melon (DHL92) v3.6.1cpimedB029
CSPI01G03560Melon (DHL92) v3.6.1cpimedB050
CSPI01G03560Cucumber (Gy14) v2cgybcpiB001
CSPI01G03560Cucumber (Gy14) v2cgybcpiB005
CSPI01G03560Cucumber (Gy14) v2cgybcpiB201
CSPI01G03560Silver-seed gourdcarcpiB0419