Bhi12G001950 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001950
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Hfr-2-like protein
Location	chr12 : 69295167 .. 69295436 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCGCACCGGGAGTTCCGAAAGTTTCCGAAGGAAAGGTTGAAATTGAAGCTGAGATATCTGAGGATTACACATGGGGAAAAACAGAACAAATGAAATGTCTATCTGAGGTTGTCCATGAGGTTACTGTGCCTGCTTGGACTAAAGTAAAGGCTAGTGTAATGGCAACACGAGCTAGTTGTGACGTTCCTTTCTCCTACACTCAACGAGACAAACTCGTGAACGGGAGTATATTACTCACCGATACCATGACGGTGTGTCTATAA

mRNA sequence

ATGACGATCGCACCGGGAGTTCCGAAAGTTTCCGAAGGAAAGGTTGAAATTGAAGCTGAGATATCTGAGGATTACACATGGGGAAAAACAGAACAAATGAAATGTCTATCTGAGGTTGTCCATGAGGTTACTGTGCCTGCTTGGACTAAAGTAAAGGCTAGTGTAATGGCAACACGAGCTAGTTGTGACGTTCCTTTCTCCTACACTCAACGAGACAAACTCGTGAACGGGAGTATATTACTCACCGATACCATGACGGTGTGTCTATAA

Coding sequence (CDS)

ATGACGATCGCACCGGGAGTTCCGAAAGTTTCCGAAGGAAAGGTTGAAATTGAAGCTGAGATATCTGAGGATTACACATGGGGAAAAACAGAACAAATGAAATGTCTATCTGAGGTTGTCCATGAGGTTACTGTGCCTGCTTGGACTAAAGTAAAGGCTAGTGTAATGGCAACACGAGCTAGTTGTGACGTTCCTTTCTCCTACACTCAACGAGACAAACTCGTGAACGGGAGTATATTACTCACCGATACCATGACGGTGTGTCTATAA

Protein sequence

MTIAPGVPKVSEGKVEIEAEISEDYTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATRASCDVPFSYTQRDKLVNGSILLTDTMTVCL

Homology

[Close]

BLAST of Bhi12G001950 vs. TrEMBL
Match: tr|A0A0A0KDU4|A0A0A0KDU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107330 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-20
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISED-YTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATR 60
           M     VPKV EG++E  +E+SED YTWG+T QMK  +EVVHEVTVPA TKVKASVMAT+
Sbjct: 364 MKFDTAVPKVFEGEIEFCSELSEDYYTWGETHQMKYHAEVVHEVTVPAGTKVKASVMATQ 423

Query: 61  ASCDVPFSYTQRDKLVNG 78
           ASCD+PFSY QRDKL +G
Sbjct: 424 ASCDIPFSYIQRDKLNDG 441

[Close]

BLAST of Bhi12G001950 vs. TrEMBL
Match: tr|A0A1S3CD76|A0A1S3CD76_CUCME (uncharacterized protein LOC103499071 OS=Cucumis melo OX=3656 GN=LOC103499071 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-19
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISED-YTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATR 60
           M     VPKVSE ++E  +++SED YTWG+T QMK  +EVVHEVTVPA TKVKASV+AT+
Sbjct: 369 MKFETAVPKVSEEEIEFCSQLSEDYYTWGETHQMKYHAEVVHEVTVPAGTKVKASVVATQ 428

Query: 61  ASCDVPFSYTQRDKLVNG 78
           ASCD+PFSY QRDKL +G
Sbjct: 429 ASCDIPFSYIQRDKLNDG 446

[Close]

BLAST of Bhi12G001950 vs. TrEMBL
Match: tr|A0A1S3CBK3|A0A1S3CBK3_CUCME (uncharacterized protein LOC103498960 OS=Cucumis melo OX=3656 GN=LOC103498960 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.4e-17
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISEDYTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATRA 60
           M+I  G P++S  +VEI AE  E+YTWG+T++ K   EV H+VTVP +TKV A V+AT+ 
Sbjct: 369 MSIESGNPELSSQEVEISAEFKEEYTWGETKETKSRREVEHQVTVPPYTKVTAKVLATKG 428

Query: 61  SCDVPFSYTQRDKLVNGSILL 82
            CD+P+SYTQRD L NG +++
Sbjct: 429 FCDIPYSYTQRDVLTNGKVVI 449

[Close]

BLAST of Bhi12G001950 vs. TrEMBL
Match: tr|A0A0A0KD71|A0A0A0KD71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G086130 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.4e-17
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISEDYTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATRA 60
           M+I  G P++S  ++EI AE  E+YTWG+T++ K   EV H+VTVP +TKV A V+AT+ 
Sbjct: 371 MSIESGCPEISSQEIEISAEFKEEYTWGETKETKSTREVEHQVTVPPYTKVIAKVLATKG 430

Query: 61  SCDVPFSYTQRDKLVNGSI 80
            CD+P+SYTQRD L NG +
Sbjct: 431 FCDIPYSYTQRDVLTNGKV 449

[Close]

BLAST of Bhi12G001950 vs. TrEMBL
Match: tr|A0A0A0KBV4|A0A0A0KBV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G085110 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISEDYTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATRA 60
           M+I  G P++S  +VE+ AE  E+YTWG+T++ K   EV H+VTVP +TKV A V+AT+ 
Sbjct: 369 MSIESGNPELSSQEVEVSAEFKEEYTWGETKETKSTREVEHQVTVPPYTKVIAKVLATKG 428

Query: 61  SCDVPFSYTQRDKLVNGSILL 82
            CD+P+SYTQRD L NG +++
Sbjct: 429 FCDIPYSYTQRDVLTNGKVVI 449

[Close]

BLAST of Bhi12G001950 vs. NCBI nr
Match: XP_022155428.1 (uncharacterized protein LOC111022575 [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISEDYTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATRA 60
           +TI  GVPKVSEG+VEI AEISE YTWGKTEQ K L+EVVH+V VPAWTKVK S++AT+A
Sbjct: 386 LTIETGVPKVSEGEVEISAEISEGYTWGKTEQFKYLAEVVHDVVVPAWTKVKGSILATQA 445

Query: 61  SCDVPFSYTQRDKLVNGSIL 81
           SCDVPFSYTQRDKL++G  +
Sbjct: 446 SCDVPFSYTQRDKLMSGKFV 465

[Close]

BLAST of Bhi12G001950 vs. NCBI nr
Match: XP_022155408.1 (uncharacterized protein LOC111022556 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 49/82 (59.76%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISEDYTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATRA 60
           +T+  GVPK+SEG++EI AE  E+Y WG T+Q K L EV H+V VPAW+KV+ S++AT+A
Sbjct: 369 VTVETGVPKISEGEIEISAEFQEEYEWGGTQQTKTLVEVTHDVMVPAWSKVRGSIIATQA 428

Query: 61  SCDVPFSYTQRDKLVNGSILLT 83
            CDVPFSYTQRDKL+NG  +++
Sbjct: 429 ICDVPFSYTQRDKLMNGRSVIS 450

[Close]

BLAST of Bhi12G001950 vs. NCBI nr
Match: XP_022157624.1 (uncharacterized protein LOC111024285 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 6.4e-21
Identity = 48/82 (58.54%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISEDYTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATRA 60
           +T+  GVPK+SEG++EI AE  E+Y WG ++Q K   EV H+VTVPAW+KV+ S++AT+A
Sbjct: 73  VTVETGVPKISEGEIEISAEFQEEYEWGGSQQTKTHVEVTHDVTVPAWSKVRGSIIATQA 132

Query: 61  SCDVPFSYTQRDKLVNGSILLT 83
            CDVPFSYTQRDKL+NG  +++
Sbjct: 133 ICDVPFSYTQRDKLMNGRSVIS 154

[Close]

BLAST of Bhi12G001950 vs. NCBI nr
Match: XP_004140621.1 (PREDICTED: uncharacterized protein LOC101217825 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISED-YTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATR 60
           M     VPKV EG++E  +E+SED YTWG+T QMK  +EVVHEVTVPA TKVKASVMAT+
Sbjct: 320 MKFDTAVPKVFEGEIEFCSELSEDYYTWGETHQMKYHAEVVHEVTVPAGTKVKASVMATQ 379

Query: 61  ASCDVPFSYTQRDKLVNG 78
           ASCD+PFSY QRDKL +G
Sbjct: 380 ASCDIPFSYIQRDKLNDG 397

[Close]

BLAST of Bhi12G001950 vs. NCBI nr
Match: KGN46532.1 (hypothetical protein Csa_6G107330 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1   MTIAPGVPKVSEGKVEIEAEISED-YTWGKTEQMKCLSEVVHEVTVPAWTKVKASVMATR 60
           M     VPKV EG++E  +E+SED YTWG+T QMK  +EVVHEVTVPA TKVKASVMAT+
Sbjct: 364 MKFDTAVPKVFEGEIEFCSELSEDYYTWGETHQMKYHAEVVHEVTVPAGTKVKASVMATQ 423

Query: 61  ASCDVPFSYTQRDKLVNG 78
           ASCD+PFSY QRDKL +G
Sbjct: 424 ASCDIPFSYIQRDKLNDG 441

The following BLAST results are available for this feature:

BLAST of Bhi12G001950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G001950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12G001950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDU4\|A0A0A0KDU4_CUCSA	8.0e-20	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G107330 PE=4 SV=1	[more]
tr\|A0A1S3CD76\|A0A1S3CD76_CUCME	6.8e-19	66.67	uncharacterized protein LOC103499071 OS=Cucumis melo OX=3656 GN=LOC103499071 PE=...	[more]
tr\|A0A1S3CBK3\|A0A1S3CBK3_CUCME	6.4e-17	53.09	uncharacterized protein LOC103498960 OS=Cucumis melo OX=3656 GN=LOC103498960 PE=...	[more]
tr\|A0A0A0KD71\|A0A0A0KD71_CUCSA	6.4e-17	53.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G086130 PE=4 SV=1	[more]
tr\|A0A0A0KBV4\|A0A0A0KBV4_CUCSA	1.1e-16	51.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G085110 PE=4 SV=1	[more]

BLAST of Bhi12G001950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155428.1	1.7e-26	75.00	uncharacterized protein LOC111022575 [Momordica charantia]	[more]
XP_022155408.1	1.7e-21	59.76	uncharacterized protein LOC111022556 [Momordica charantia]	[more]
XP_022157624.1	6.4e-21	58.54	uncharacterized protein LOC111024285 [Momordica charantia]	[more]
XP_004140621.1	1.2e-19	69.23	PREDICTED: uncharacterized protein LOC101217825 [Cucumis sativus]	[more]
KGN46532.1	1.2e-19	69.23	hypothetical protein Csa_6G107330 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009405	pathogenesis
cellular_component	GO:0005576	extracellular region

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001950	Bhi12M001950	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.170.15.10		coord: 1..87 e-value: 1.2E-19 score: 72.4
None	No IPR available	PANTHER	PTHR39244	FAMILY NOT NAMED	coord: 1..81
None	No IPR available	SUPERFAMILY	SSF56973	Aerolisin/ETX pore-forming domain	coord: 6..69

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001950	Cucumber (Gy14) v1	cgywgoB205
Bhi12G001950	Cucumber (Gy14) v2	cgybwgoB522
Bhi12G001950	Cucurbita maxima (Rimu)	cmawgoB0457
Bhi12G001950	Cucurbita moschata (Rifu)	cmowgoB0455
Bhi12G001950	Cucurbita pepo (Zucchini)	cpewgoB0174
Bhi12G001950	Wild cucumber (PI 183967)	cpiwgoB549
Bhi12G001950	Cucumber (Chinese Long) v3	cucwgoB562
Bhi12G001950	Cucumber (Chinese Long) v2	cuwgoB545
Bhi12G001950	Bottle gourd (USVL1VR-Ls)	lsiwgoB011
Bhi12G001950	Melon (DHL92) v3.6.1	medwgoB094
Bhi12G001950	Melon (DHL92) v3.5.1	mewgoB093
Bhi12G001950	Watermelon (Charleston Gray)	wcgwgoB499
Bhi12G001950	Watermelon (97103) v2	wgowmbB094
Bhi12G001950	Watermelon (97103) v1	wgowmB093
Bhi12G001950	Silver-seed gourd	carwgoB1045