Bhi12G001912 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001912
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Natterin-4
Location	chr12 : 66939445 .. 66939780 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCTTTGGTGACTTTGCCGAAATATATCATGTTCAAGGGCGACAACGGGGGGTATCTTCAAGGTCATTCACAAGATGCCATGAATATTTACAGTTCTTAGGTAATGATCCATCAGCCTATGCAGTAGGGAATGAGGTATTTAAAGTGGGCGATGGAAATGTTAGAATTAAGTCATTACATTGGGGTAAATTTTGGAAGAGTGATCCTAATTGGATTTACGCTAATTCAAGTGATACAAGTAGTAATGATAAATCCACTTTGTTTACTCCTATAAAGGTTAGTGATAATGTGATAGGCATTAAGAATTTGGGTGGGAATCAATTGTACTAA

mRNA sequence

ATGGGAAGCTTTGGTGACTTTGCCGAAATATATCATGTTCAAGGGCGACAACGGGGGGTATCTTCAAGGTCATTCACAAGATGCCATGAATATTTACAGTTCTTAGGTAATGATCCATCAGCCTATGCAGTAGGGAATGAGGTATTTAAAGTGGGCGATGGAAATGTTAGAATTAAGTCATTACATTGGGGTAAATTTTGGAAGAGTGATCCTAATTGGATTTACGCTAATTCAAGTGATACAAGTAGTAATGATAAATCCACTTTGTTTACTCCTATAAAGGTTAGTGATAATGTGATAGGCATTAAGAATTTGGGTGGGAATCAATTGTACTAA

Coding sequence (CDS)

ATGGGAAGCTTTGGTGACTTTGCCGAAATATATCATGTTCAAGGGCGACAACGGGGGGTATCTTCAAGGTCATTCACAAGATGCCATGAATATTTACAGTTCTTAGGTAATGATCCATCAGCCTATGCAGTAGGGAATGAGGTATTTAAAGTGGGCGATGGAAATGTTAGAATTAAGTCATTACATTGGGGTAAATTTTGGAAGAGTGATCCTAATTGGATTTACGCTAATTCAAGTGATACAAGTAGTAATGATAAATCCACTTTGTTTACTCCTATAAAGGTTAGTGATAATGTGATAGGCATTAAGAATTTGGGTGGGAATCAATTGTACTAA

Protein sequence

MGSFGDFAEIYHVQGRQRGVSSRSFTRCHEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKSTLFTPIKVSDNVIGIKNLGGNQLY

Homology

[Close]

BLAST of Bhi12G001912 vs. TrEMBL
Match: tr|A0A1S3C8E4|A0A1S3C8E4_CUCME (uncharacterized protein LOC103497999 OS=Cucumis melo OX=3656 GN=LOC103497999 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 49/84 (58.33%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           + YL+F  +DP ++ VGNEVF++ DG VRIKSL+WGKFW+   +WI+A+S+DTS+N+  T
Sbjct: 174 YPYLRFSSSDPYSHPVGNEVFRMSDGKVRIKSLYWGKFWRCTGSWIWADSTDTSANNHYT 233

Query: 89  LFTPIKVSDNVIGIKNLG-GNQLY 112
           LFTP++VSDNVI +KNLG G Q +
Sbjct: 234 LFTPVQVSDNVIALKNLGEGTQFF 257

[Close]

BLAST of Bhi12G001912 vs. TrEMBL
Match: tr|A0A2R6R6R8|A0A2R6R6R8_ACTCH (Natterin-3 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10740 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           + YLQF  +D     VGNEVF   DG+VRIKS H+GKFW+  PNWI+A+S DT+SN+  T
Sbjct: 181 YRYLQFGSSDIGDPTVGNEVFTTHDGSVRIKSDHFGKFWRRSPNWIWADSDDTTSNNSDT 240

Query: 89  LFTPIKVSDNVIGIKNLGGN 109
           LF PIKV +N++ ++NLG N
Sbjct: 241 LFWPIKVDNNIVALRNLGNN 260

[Close]

BLAST of Bhi12G001912 vs. TrEMBL
Match: tr|F6HZZ6|F6HZZ6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.9e-17
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           H YL+F  +D     VGNEVF   DG+VRIKS ++G+FW+  PNWI+A+S D+++N+  T
Sbjct: 181 HPYLEFASSDIGDPTVGNEVFTTHDGSVRIKSDYFGRFWRRSPNWIWADSDDSTTNNSDT 240

Query: 89  LFTPIKVSDNVIGIKNLGGN 109
           LF P++V +NV+ ++NLG N
Sbjct: 241 LFWPVRVDNNVVALRNLGNN 260

[Close]

BLAST of Bhi12G001912 vs. TrEMBL
Match: tr|W9RM79|W9RM79_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013061 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           + YLQF+  D     + NE+   GDG VRI+SL  G FW+  PNWI+A+S+D++ +D +T
Sbjct: 189 YPYLQFVSTDSGDQTIANEISTFGDGFVRIRSLSTGNFWRRSPNWIWADSTDSTGSDSNT 248

Query: 89  LFTPIKVSDNVIGIKNLGGN 109
           LF PIK++DNV+ ++NLG N
Sbjct: 249 LFLPIKLADNVVALRNLGNN 268

[Close]

BLAST of Bhi12G001912 vs. TrEMBL
Match: tr|D7U3H5|D7U3H5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.1e-16
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           H YL+F  +D     VGNEVF   D +VRIKS H+G+FW+  PNWI+A+S D+++N+  T
Sbjct: 181 HPYLEFASSDIGDPTVGNEVFTTHDRSVRIKSHHFGRFWRRSPNWIWADSDDSTTNNSDT 240

Query: 89  LFTPIKVSDNVIGIKNLGGN 109
           LF P++V  NV+ ++N G N
Sbjct: 241 LFWPVRVDKNVVALRNFGNN 260

[Close]

BLAST of Bhi12G001912 vs. NCBI nr
Match: XP_008458670.1 (PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 49/84 (58.33%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           + YL+F  +DP ++ VGNEVF++ DG VRIKSL+WGKFW+   +WI+A+S+DTS+N+  T
Sbjct: 174 YPYLRFSSSDPYSHPVGNEVFRMSDGKVRIKSLYWGKFWRCTGSWIWADSTDTSANNHYT 233

Query: 89  LFTPIKVSDNVIGIKNLG-GNQLY 112
           LFTP++VSDNVI +KNLG G Q +
Sbjct: 234 LFTPVQVSDNVIALKNLGEGTQFF 257

[Close]

BLAST of Bhi12G001912 vs. NCBI nr
Match: XP_023544075.1 (uncharacterized protein LOC111803769 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 31  YLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKSTLF 90
           YLQF  ND     VGNEV    DGNVRIKS H+ KFW+  PNWI+A+S DT++NDK TLF
Sbjct: 182 YLQFSSNDIGDPTVGNEVSTTNDGNVRIKSNHFEKFWRRSPNWIWADSHDTTANDKDTLF 241

Query: 91  TPIKVSDNVIGIKNLGGN 109
            P+KV +N++ ++NLG N
Sbjct: 242 WPVKVDNNIVALRNLGNN 259

[Close]

BLAST of Bhi12G001912 vs. NCBI nr
Match: PSS21691.1 (Natterin-3 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           + YLQF  +D     VGNEVF   DG+VRIKS H+GKFW+  PNWI+A+S DT+SN+  T
Sbjct: 181 YRYLQFGSSDIGDPTVGNEVFTTHDGSVRIKSDHFGKFWRRSPNWIWADSDDTTSNNSDT 240

Query: 89  LFTPIKVSDNVIGIKNLGGN 109
           LF PIKV +N++ ++NLG N
Sbjct: 241 LFWPIKVDNNIVALRNLGNN 260

[Close]

BLAST of Bhi12G001912 vs. NCBI nr
Match: XP_023544067.1 (uncharacterized protein LOC111803764 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.5 bits (249), Expect = 3.7e-18
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 29  HEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSLHWGKFWKSDPNWIYANSSDTSSNDKST 88
           H YLQF  ND     VGNEV    DGNVRIKS ++GKFW+  PNWI+A+S DT++++K T
Sbjct: 180 HPYLQFSANDIGDPTVGNEVSTTHDGNVRIKSNYFGKFWRRSPNWIWADSHDTTASNKDT 239

Query: 89  LFTPIKVSDNVIGIKNLGGN 109
           LF P+KV +N++ ++NLG N
Sbjct: 240 LFWPVKVENNIVALRNLGNN 259

[Close]

BLAST of Bhi12G001912 vs. NCBI nr
Match: XP_022156054.1 (uncharacterized protein LOC111023023 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 4.9e-18
Identity = 49/107 (45.79%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 3   SFGDFAEIYHVQGRQRGVSSRS-FTRCHEYLQFLGNDPSAYAVGNEVFKVGDGNVRIKSL 62
           SF  F +    +G  RG   ++ + + HEY +F  ND +  AVGNEV     G+VRIKS 
Sbjct: 156 SFFIFPKHVAFKGGNRGKFLKAIWLQRHEYQEFSANDMADPAVGNEVSFTRHGDVRIKSN 215

Query: 63  HWGKFWKSDPNWIYANSSDTSSNDKSTLFTPIKVSDNVIGIKNLGGN 109
           H+GKFW+  PNWI+A+S+D ++N+K TLF P+KV++N++ ++NLG N
Sbjct: 216 HFGKFWRLSPNWIWADSTDPTANNKHTLFKPVKVANNIVALRNLGNN 262

The following BLAST results are available for this feature:

BLAST of Bhi12G001912 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G001912 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12G001912 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8E4\|A0A1S3C8E4_CUCME	2.4e-21	58.33	uncharacterized protein LOC103497999 OS=Cucumis melo OX=3656 GN=LOC103497999 PE=...	[more]
tr\|A0A2R6R6R8\|A0A2R6R6R8_ACTCH	1.9e-18	56.25	Natterin-3 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc107...	[more]
tr\|F6HZZ6\|F6HZZ6_VITVI	7.9e-17	50.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06090 PE=4 SV=...	[more]
tr\|W9RM79\|W9RM79_9ROSA	3.0e-16	48.75	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013061 PE=4 SV=1	[more]
tr\|D7U3H5\|D7U3H5_VITVI	5.1e-16	48.75	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06000 PE=4 SV=...	[more]

BLAST of Bhi12G001912 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458670.1	3.6e-21	58.33	PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo]	[more]
XP_023544075.1	1.7e-18	57.69	uncharacterized protein LOC111803769 [Cucurbita pepo subsp. pepo]	[more]
PSS21691.1	2.9e-18	56.25	Natterin-3 like [Actinidia chinensis var. chinensis]	[more]
XP_023544067.1	3.7e-18	55.00	uncharacterized protein LOC111803764 [Cucurbita pepo subsp. pepo]	[more]
XP_022156054.1	4.9e-18	45.79	uncharacterized protein LOC111023023 [Momordica charantia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036242	Agglutinin_dom_sf

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001912	Bhi12M001912	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 18..111 e-value: 1.2E-19 score: 72.6
None	No IPR available	PANTHER	PTHR39244	FAMILY NOT NAMED	coord: 22..108
IPR036242	Agglutinin domain superfamily	SUPERFAMILY	SSF50382	Agglutinin	coord: 26..108

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001912	Cucumber (Gy14) v1	cgywgoB205
Bhi12G001912	Cucumber (Gy14) v2	cgybwgoB522
Bhi12G001912	Cucurbita maxima (Rimu)	cmawgoB0457
Bhi12G001912	Cucurbita maxima (Rimu)	cmawgoB1099
Bhi12G001912	Cucurbita moschata (Rifu)	cmowgoB0455
Bhi12G001912	Cucurbita moschata (Rifu)	cmowgoB1093
Bhi12G001912	Cucurbita pepo (Zucchini)	cpewgoB0174
Bhi12G001912	Cucurbita pepo (Zucchini)	cpewgoB0381
Bhi12G001912	Wild cucumber (PI 183967)	cpiwgoB549
Bhi12G001912	Cucumber (Chinese Long) v3	cucwgoB562
Bhi12G001912	Cucumber (Chinese Long) v2	cuwgoB545
Bhi12G001912	Bottle gourd (USVL1VR-Ls)	lsiwgoB011
Bhi12G001912	Melon (DHL92) v3.6.1	medwgoB094
Bhi12G001912	Melon (DHL92) v3.5.1	mewgoB093
Bhi12G001912	Watermelon (Charleston Gray)	wcgwgoB499
Bhi12G001912	Watermelon (97103) v2	wgowmbB094
Bhi12G001912	Watermelon (97103) v1	wgowmB093
Bhi12G001912	Silver-seed gourd	carwgoB0667
Bhi12G001912	Silver-seed gourd	carwgoB0713