Bhi12G001133 (gene) Wax gourd

NameBhi12G001133
Typegene
OrganismBenincasa hispida (Wax gourd)
Description30S ribosomal protein S13
Locationchr12 : 40191707 .. 40193843 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAGTTGGGCCTGTGAATTTGTTTGAGCTTAAGCCTTTATCCATATCCTTGGAGTGGGATGAAGAAGATAAGGTACTGAAACCGAAACCAGAGAGCCGCTGGGAGTCGAATTGAAATCCCGTTGGTATTCCTAATGTGCTGAACTTTACTGATTGGTGTTTGTTGATTGAGGAGTTGGAAGATAATGGCGCAGAGTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTCATTTTTACCCTCTTCCCTTCTACAATTTCCATTTCCTTCATTTCCTCGTGCTTTAATTTCATGCATCTTTGTTTAGCATGTGGAGGGGTTTTCCCCAATTCTATTCCACATACATGTATCCTGCAAGTTCTTTTTCGTTTTCTCTTAATTCACGTTCCATTGTCTTCTTGATTTCTGCGTTCCCTTTGCGTATGTACTAGTATTGCACGTTGATTCTTTGAAACTATTATTTCATAACATACTCTCTACACTAATTTATCTCTATCTTCATTGAACATTGTGATGAAACATAAGTTTCTGCATTTCCTTTCCCTAACTGCTGTTCTCTAGACTCTAGAGGAACCAAATTCATGATCCTAAATCCAACACCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAACAAAACTATAATAATAAAATCCTTAATATCTGTCCCAGTTTCTCTCGACCTGTCTATGCATGATTGATTATAAAGATTAAGCAGATATAATTGGACTGAAAGAGGAGATTCGGCGGATTGATGGCTGACCTTAAATGGCAATTCGACACGCTAGTCTATGCTTGACAATTGACATTATCAACTTCATCCTTGTTGAAGTTTTGGTATAATTAAATTTACTGTAATCCATTAACGTAGGATTTTGGGTAGATTGTTGAGTTAACAAAGGTATTAGTGTAGGAGGTCTTGTATTCGTACTTTGTACATTATCAATTAATGTTGATTTCTACTTGTAGGACCTACAAATTTTCAAGGTCGCTAAGAGGAGTGGTGTGTTCATGTATCTAAATTTATTGTAACCTACCAGTTGAAGCTTTTTTGGTTGATAGGTGATTTAACGGAATTCTGGCTTTTCTTGAATGATCCCTCATTTTTCTTCCTTCAATTTTCTTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCCGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTTTCTTTCTCTATCTGTGTGTGTGTGTTAAAATTACAAACGTTGGTTGTCTCTATACTTGTGTGAAGTGATCATAAATGGCGATTGTTGGTTTTTGCAGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCGATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTATTTTCCTCATGGAAATATAGTTTCTTGCAAATACTCTGTTTTATTGCTGTGCCATATTCTACTTTACATATGTGCTCACCCTCTTTGATAAATGCCGAATCATCTGTATATGAGTGGTGTTATCTTCAATTGATCATTTAGTTCATTAAGCAACCAACCAAATAATAAGTATAGATACAAAGGGTATATATGTTTACAAAAGCTCTGTAGACCAAAATTTTATAATTGTTATTAGAATATCACTGGGAAATTTTTAGTTAATAATTTAGAATTTTACTATAATCTTTTGTAGATACTCGTTTTACCACTGTAATCTTTTGGAACGGTAATTAACTGATATAAAAAGGAGTAGATTTCATCCAAG

mRNA sequence

AAAGAGTTGGGCCTGTGAATTTGTTTGAGCTTAAGCCTTTATCCATATCCTTGGAGTGGGATGAAGAAGATAAGGTACTGAAACCGAAACCAGAGAGCCGCTGGGAGTCGAATTGAAATCCCGTTGGTATTCCTAATGTGCTGAACTTTACTGATTGGTGTTTGTTGATTGAGGAGTTGGAAGATAATGGCGCAGAGTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCCGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCGATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTATTTTCCTCATGGAAATATAGTTTCTTGCAAATACTCTGTTTTATTGCTGTGCCATATTCTACTTTACATATGTGCTCACCCTCTTTGATAAATGCCGAATCATCTGTATATGAGTGGTGTTATCTTCAATTGATCATTTAGTTCATTAAGCAACCAACCAAATAATAAGTATAGATACAAAGGGTATATATGTTTACAAAAGCTCTGTAGACCAAAATTTTATAATTGTTATTAGAATATCACTGGGAAATTTTTAGTTAATAATTTAGAATTTTACTATAATCTTTTGTAGATACTCGTTTTACCACTGTAATCTTTTGGAACGGTAATTAACTGATATAAAAAGGAGTAGATTTCATCCAAG

Coding sequence (CDS)

ATGGCGCAGAGTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCCGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
BLAST of Bhi12G001133 vs. Swiss-Prot
Match: sp|P42732|RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.2e-66
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

BLAST of Bhi12G001133 vs. Swiss-Prot
Match: sp|P82163|RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 238.4 bits (607), Expect = 5.6e-62
Identity = 123/169 (72.78%), Postives = 147/169 (86.98%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPL-SNTLSF-PISNPQVRGLQIKCVRVGGVEIPNNKR 60
           MA +LA P+APS+S+ICN + S  L S++L+F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           V+YSLQYIHGIGR+ A++IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP 167
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

BLAST of Bhi12G001133 vs. Swiss-Prot
Match: sp|Q9CA19|RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0

Query: 20  RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

BLAST of Bhi12G001133 vs. Swiss-Prot
Match: sp|B1VAC3|RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLSEEELISIRDEVSK 106
           R+ G++IP++KRV  +L YI+G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

BLAST of Bhi12G001133 vs. Swiss-Prot
Match: sp|Q8LPW2|RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 0

Query: 35  NPQVRGLQIKCVRVG---GVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDL 94
           N  V G++++ + +G   G EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L VENK  KDL
Sbjct: 18  NLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDL 77

Query: 95  SEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRT 154
           S+ EL SIR+ +SKY+I  DL++     + RL  IQCYRGIRH+  LPCRGQRT  N RT
Sbjct: 78  SKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNART 137

Query: 155 LKGKK 157
            + +K
Sbjct: 138 RRSRK 142

BLAST of Bhi12G001133 vs. TAIR10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-67
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

BLAST of Bhi12G001133 vs. TAIR10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 137.5 bits (345), Expect = 7.5e-33
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0

Query: 20  RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

BLAST of Bhi12G001133 vs. TAIR10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04
Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0

Query: 46  VRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVE-NKITKDLSEEELISIRDEVS 105
           +RV    +   +++ ++L  I GIGR  A  +    +V+ NK   +LS  E+ ++   V+
Sbjct: 13  LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVA 72

Query: 106 ---------------KYMIEGDLRRF--NALAIR------RLKEIQCYRGIRHIQGLPCR 164
                          K   +G   +   NAL ++      RLK+I+ +RG+RH  GL  R
Sbjct: 73  NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132

BLAST of Bhi12G001133 vs. TAIR10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04
Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0

Query: 46  VRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVE-NKITKDLSEEELISIRDEVS 105
           +RV    +   +++ ++L  I GIGR  A  +    +V+ NK   +LS  E+ ++   V+
Sbjct: 13  LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVA 72

Query: 106 ---------------KYMIEGDLRRF--NALAIR------RLKEIQCYRGIRHIQGLPCR 164
                          K   +G   +   NAL ++      RLK+I+ +RG+RH  GL  R
Sbjct: 73  NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132

BLAST of Bhi12G001133 vs. TAIR10
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04
Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0

Query: 46  VRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVE-NKITKDLSEEELISIRDEVS 105
           +RV    +   +++ ++L  I GIGR  A  +    +V+ NK   +LS  E+ ++   V+
Sbjct: 13  LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVA 72

Query: 106 ---------------KYMIEGDLRRF--NALAIR------RLKEIQCYRGIRHIQGLPCR 164
                          K   +G   +   NAL ++      RLK+I+ +RG+RH  GL  R
Sbjct: 73  NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132

BLAST of Bhi12G001133 vs. TrEMBL
Match: tr|A0A1S3CPR4|A0A1S3CPR4_CUCME (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.1e-83
Identity = 160/167 (95.81%), Postives = 166/167 (99.40%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

BLAST of Bhi12G001133 vs. TrEMBL
Match: tr|A0A0A0KN28|A0A0A0KN28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 4.0e-81
Identity = 157/167 (94.01%), Postives = 163/167 (97.60%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+ A+PLA SLS+I N+RN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

BLAST of Bhi12G001133 vs. TrEMBL
Match: tr|A0A2P5DTJ2|A0A2P5DTJ2_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_032960 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.0e-73
Identity = 140/168 (83.33%), Postives = 156/168 (92.86%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQ+LAMPLAPSLSVICN R SNPLSN L FPI++P ++ GL +KC RVGGVEIPNNKR+
Sbjct: 48  MAQTLAMPLAPSLSVICNGRTSNPLSNRLFFPIASPSKIGGLSVKCARVGGVEIPNNKRI 107

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           ++SLQYIHGIGR  A+KIL DL++ENK+TKD SEEEL++IRDEVSKYMIEGDLRRFNALA
Sbjct: 108 EFSLQYIHGIGRTRARKILNDLSIENKLTKDFSEEELVTIRDEVSKYMIEGDLRRFNALA 167

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 168 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKAPR 215

BLAST of Bhi12G001133 vs. TrEMBL
Match: tr|A0A2I4GPL5|A0A2I4GPL5_9ROSI (30S ribosomal protein S13, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109009704 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.0e-72
Identity = 145/168 (86.31%), Postives = 154/168 (91.67%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPI-SNPQVRGLQIKCVRVGGVEIPNNKRV 60
           MAQ+LAMPLAPSLSVICN RN   LSN+ SFPI S P+VRGL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPASLSNSFSFPIASTPKVRGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           +YSLQYIHGIGR  A++IL DL++ENKITKDLSEEELI IR EVSKYMIEGDLRRFNALA
Sbjct: 61  EYSLQYIHGIGRTRARQILCDLSMENKITKDLSEEELIIIRGEVSKYMIEGDLRRFNALA 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           IRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKKV IAGKKKAPR
Sbjct: 121 IRRLKEIQCYRGMRHIQGLPCRGQRTKNNCRTLKGKKVTIAGKKKAPR 168

BLAST of Bhi12G001133 vs. TrEMBL
Match: tr|A0A2I4HK02|A0A2I4HK02_9ROSI (30S ribosomal protein S13, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109018770 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.6e-72
Identity = 144/168 (85.71%), Postives = 154/168 (91.67%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPI-SNPQVRGLQIKCVRVGGVEIPNNKRV 60
           MAQ+LAMPLAPSLSVICN RN   LSN+ SFP+ S P+VRGL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPASLSNSFSFPVASTPKVRGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           +YSLQYIHGIGR  A++IL DL++ENKITKDLSEEELI IR EVSKYMIEGDLRRFNALA
Sbjct: 61  EYSLQYIHGIGRTRARQILCDLSMENKITKDLSEEELIIIRGEVSKYMIEGDLRRFNALA 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           IRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKKV IAGKKKAPR
Sbjct: 121 IRRLKEIQCYRGMRHIQGLPCRGQRTKNNCRTLKGKKVTIAGKKKAPR 168

BLAST of Bhi12G001133 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 1.7e-83
Identity = 160/167 (95.81%), Postives = 166/167 (99.40%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

BLAST of Bhi12G001133 vs. NCBI nr
Match: XP_004140327.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus] >KGN50978.1 hypothetical protein Csa_5G381830 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 6.1e-81
Identity = 157/167 (94.01%), Postives = 163/167 (97.60%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+ A+PLA SLS+I N+RN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

BLAST of Bhi12G001133 vs. NCBI nr
Match: XP_022141626.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia])

HSP 1 Score: 309.3 bits (791), Expect = 8.0e-81
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQSLAMP+APSLS+ICN RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 167

BLAST of Bhi12G001133 vs. NCBI nr
Match: XP_022939154.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80
Identity = 154/167 (92.22%), Postives = 162/167 (97.01%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA +LA+P+APSLS+ICN+R SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 153 MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 212

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 213 YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 272

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 273 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 319

BLAST of Bhi12G001133 vs. NCBI nr
Match: XP_022993180.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80
Identity = 154/167 (92.22%), Postives = 162/167 (97.01%), Query Frame = 0

Query: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA +LA+P+APSLS+ICN+R SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|P42732|RR13_ARATH2.2e-6676.3330S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
sp|P82163|RR13_SPIOL5.6e-6272.7830S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P... [more]
sp|Q9CA19|RT13_ARATH1.4e-3147.30Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
sp|B1VAC3|RS13_PHYAS2.4e-2852.9430S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1[more]
sp|Q8LPW2|RT13_SOYBN2.4e-2851.20Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP... [more]
Match NameE-valueIdentityDescription
AT5G14320.11.2e-6776.33Ribosomal protein S13/S18 family[more]
AT1G77750.17.5e-3347.30Ribosomal protein S13/S18 family[more]
AT1G22780.17.3e-0428.87Ribosomal protein S13/S18 family[more]
AT1G34030.17.3e-0428.87Ribosomal protein S13/S18 family[more]
AT4G09800.17.3e-0428.87S18 ribosomal protein[more]
Match NameE-valueIdentityDescription
tr|A0A1S3CPR4|A0A1S3CPR4_CUCME1.1e-8395.8130S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408... [more]
tr|A0A0A0KN28|A0A0A0KN28_CUCSA4.0e-8194.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1[more]
tr|A0A2P5DTJ2|A0A2P5DTJ2_PARAD9.0e-7383.33Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_032960 PE=3 SV=... [more]
tr|A0A2I4GPL5|A0A2I4GPL5_9ROSI2.0e-7286.3130S ribosomal protein S13, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC10... [more]
tr|A0A2I4HK02|A0A2I4HK02_9ROSI2.6e-7285.7130S ribosomal protein S13, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC10... [more]
Match NameE-valueIdentityDescription
XP_008465819.11.7e-8395.81PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo][more]
XP_004140327.16.1e-8194.01PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus] >KGN5... [more]
XP_022141626.18.0e-8192.8130S ribosomal protein S13, chloroplastic-like [Momordica charantia][more]
XP_022939154.15.2e-8092.2230S ribosomal protein S13, chloroplastic-like [Cucurbita moschata][more]
XP_022993180.15.2e-8092.2230S ribosomal protein S13, chloroplastic-like [Cucurbita maxima][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR010979Ribosomal_S13-like_H2TH
IPR018269Ribosomal_S13_CS
IPR001892Ribosomal_S13
IPR019980Ribosomal_S13_bac-type
IPR02743730s_Rbsml_prot_S13_C
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001133Bhi12M001133mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02743730s ribosomal protein S13, C-terminalGENE3DG3DSA:4.10.910.10coord: 117..167
e-value: 4.6E-24
score: 85.7
IPR019980Ribosomal protein S13, bacterial-typeTIGRFAMTIGR03631TIGR03631coord: 47..156
e-value: 1.8E-40
score: 135.9
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 30..167
e-value: 1.9E-48
score: 161.7
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 47..151
e-value: 6.8E-32
score: 110.4
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 48..154
score: 34.886
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 45..161
score: 24.257
NoneNo IPR availableGENE3DG3DSA:1.10.8.50coord: 45..114
e-value: 3.0E-26
score: 93.2
NoneNo IPR availablePANTHERPTHR10871:SF11SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIALcoord: 32..163
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 32..163
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 130..143
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILYSSF46946S13-like H2TH domaincoord: 46..157