Bhi12M001133 (mRNA) Wax gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGAGTTGGGCCTGTGAATTTGTTTGAGCTTAAGCCTTTATCCATATCCTTGGAGTGGGATGAAGAAGATAAGGTACTGAAACCGAAACCAGAGAGCCGCTGGGAGTCGAATTGAAATCCCGTTGGTATTCCTAATGTGCTGAACTTTACTGATTGGTGTTTGTTGATTGAGGAGTTGGAAGATAATGGCGCAGAGTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTCATTTTTACCCTCTTCCCTTCTACAATTTCCATTTCCTTCATTTCCTCGTGCTTTAATTTCATGCATCTTTGTTTAGCATGTGGAGGGGTTTTCCCCAATTCTATTCCACATACATGTATCCTGCAAGTTCTTTTTCGTTTTCTCTTAATTCACGTTCCATTGTCTTCTTGATTTCTGCGTTCCCTTTGCGTATGTACTAGTATTGCACGTTGATTCTTTGAAACTATTATTTCATAACATACTCTCTACACTAATTTATCTCTATCTTCATTGAACATTGTGATGAAACATAAGTTTCTGCATTTCCTTTCCCTAACTGCTGTTCTCTAGACTCTAGAGGAACCAAATTCATGATCCTAAATCCAACACCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAACAAAACTATAATAATAAAATCCTTAATATCTGTCCCAGTTTCTCTCGACCTGTCTATGCATGATTGATTATAAAGATTAAGCAGATATAATTGGACTGAAAGAGGAGATTCGGCGGATTGATGGCTGACCTTAAATGGCAATTCGACACGCTAGTCTATGCTTGACAATTGACATTATCAACTTCATCCTTGTTGAAGTTTTGGTATAATTAAATTTACTGTAATCCATTAACGTAGGATTTTGGGTAGATTGTTGAGTTAACAAAGGTATTAGTGTAGGAGGTCTTGTATTCGTACTTTGTACATTATCAATTAATGTTGATTTCTACTTGTAGGACCTACAAATTTTCAAGGTCGCTAAGAGGAGTGGTGTGTTCATGTATCTAAATTTATTGTAACCTACCAGTTGAAGCTTTTTTGGTTGATAGGTGATTTAACGGAATTCTGGCTTTTCTTGAATGATCCCTCATTTTTCTTCCTTCAATTTTCTTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCCGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTTTCTTTCTCTATCTGTGTGTGTGTGTTAAAATTACAAACGTTGGTTGTCTCTATACTTGTGTGAAGTGATCATAAATGGCGATTGTTGGTTTTTGCAGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCGATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTATTTTCCTCATGGAAATATAGTTTCTTGCAAATACTCTGTTTTATTGCTGTGCCATATTCTACTTTACATATGTGCTCACCCTCTTTGATAAATGCCGAATCATCTGTATATGAGTGGTGTTATCTTCAATTGATCATTTAGTTCATTAAGCAACCAACCAAATAATAAGTATAGATACAAAGGGTATATATGTTTACAAAAGCTCTGTAGACCAAAATTTTATAATTGTTATTAGAATATCACTGGGAAATTTTTAGTTAATAATTTAGAATTTTACTATAATCTTTTGTAGATACTCGTTTTACCACTGTAATCTTTTGGAACGGTAATTAACTGATATAAAAAGGAGTAGATTTCATCCAAG AAAGAGTTGGGCCTGTGAATTTGTTTGAGCTTAAGCCTTTATCCATATCCTTGGAGTGGGATGAAGAAGATAAGGTACTGAAACCGAAACCAGAGAGCCGCTGGGAGTCGAATTGAAATCCCGTTGGTATTCCTAATGTGCTGAACTTTACTGATTGGTGTTTGTTGATTGAGGAGTTGGAAGATAATGGCGCAGAGTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCCGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCGATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTATTTTCCTCATGGAAATATAGTTTCTTGCAAATACTCTGTTTTATTGCTGTGCCATATTCTACTTTACATATGTGCTCACCCTCTTTGATAAATGCCGAATCATCTGTATATGAGTGGTGTTATCTTCAATTGATCATTTAGTTCATTAAGCAACCAACCAAATAATAAGTATAGATACAAAGGGTATATATGTTTACAAAAGCTCTGTAGACCAAAATTTTATAATTGTTATTAGAATATCACTGGGAAATTTTTAGTTAATAATTTAGAATTTTACTATAATCTTTTGTAGATACTCGTTTTACCACTGTAATCTTTTGGAACGGTAATTAACTGATATAAAAAGGAGTAGATTTCATCCAAG ATGGCGCAGAGTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCCGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGA MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
BLAST of Bhi12M001133 vs. Swiss-Prot
Match: sp|P42732|RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 2.2e-66 Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0
BLAST of Bhi12M001133 vs. Swiss-Prot
Match: sp|P82163|RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3) HSP 1 Score: 238.4 bits (607), Expect = 5.6e-62 Identity = 123/169 (72.78%), Postives = 147/169 (86.98%), Query Frame = 0
BLAST of Bhi12M001133 vs. Swiss-Prot
Match: sp|Q9CA19|RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31 Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0
BLAST of Bhi12M001133 vs. Swiss-Prot
Match: sp|B1VAC3|RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28 Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0
BLAST of Bhi12M001133 vs. Swiss-Prot
Match: sp|Q8LPW2|RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28 Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 0
BLAST of Bhi12M001133 vs. TAIR10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family) HSP 1 Score: 253.1 bits (645), Expect = 1.2e-67 Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0
BLAST of Bhi12M001133 vs. TAIR10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family) HSP 1 Score: 137.5 bits (345), Expect = 7.5e-33 Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0
BLAST of Bhi12M001133 vs. TAIR10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family) HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04 Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0
BLAST of Bhi12M001133 vs. TAIR10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family) HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04 Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0
BLAST of Bhi12M001133 vs. TAIR10
Match: AT4G09800.1 (S18 ribosomal protein) HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04 Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0
BLAST of Bhi12M001133 vs. TrEMBL
Match: tr|A0A1S3CPR4|A0A1S3CPR4_CUCME (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 1.1e-83 Identity = 160/167 (95.81%), Postives = 166/167 (99.40%), Query Frame = 0
BLAST of Bhi12M001133 vs. TrEMBL
Match: tr|A0A0A0KN28|A0A0A0KN28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 4.0e-81 Identity = 157/167 (94.01%), Postives = 163/167 (97.60%), Query Frame = 0
BLAST of Bhi12M001133 vs. TrEMBL
Match: tr|A0A2P5DTJ2|A0A2P5DTJ2_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_032960 PE=3 SV=1) HSP 1 Score: 282.0 bits (720), Expect = 9.0e-73 Identity = 140/168 (83.33%), Postives = 156/168 (92.86%), Query Frame = 0
BLAST of Bhi12M001133 vs. TrEMBL
Match: tr|A0A2I4GPL5|A0A2I4GPL5_9ROSI (30S ribosomal protein S13, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109009704 PE=3 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 2.0e-72 Identity = 145/168 (86.31%), Postives = 154/168 (91.67%), Query Frame = 0
BLAST of Bhi12M001133 vs. TrEMBL
Match: tr|A0A2I4HK02|A0A2I4HK02_9ROSI (30S ribosomal protein S13, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109018770 PE=3 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 2.6e-72 Identity = 144/168 (85.71%), Postives = 154/168 (91.67%), Query Frame = 0
BLAST of Bhi12M001133 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]) HSP 1 Score: 318.2 bits (814), Expect = 1.7e-83 Identity = 160/167 (95.81%), Postives = 166/167 (99.40%), Query Frame = 0
BLAST of Bhi12M001133 vs. NCBI nr
Match: XP_004140327.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus] >KGN50978.1 hypothetical protein Csa_5G381830 [Cucumis sativus]) HSP 1 Score: 309.7 bits (792), Expect = 6.1e-81 Identity = 157/167 (94.01%), Postives = 163/167 (97.60%), Query Frame = 0
BLAST of Bhi12M001133 vs. NCBI nr
Match: XP_022141626.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia]) HSP 1 Score: 309.3 bits (791), Expect = 8.0e-81 Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 0
BLAST of Bhi12M001133 vs. NCBI nr
Match: XP_022939154.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80 Identity = 154/167 (92.22%), Postives = 162/167 (97.01%), Query Frame = 0
BLAST of Bhi12M001133 vs. NCBI nr
Match: XP_022993180.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80 Identity = 154/167 (92.22%), Postives = 162/167 (97.01%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
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