Bhi08G000340 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000340
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Secretion protein HlyD family protein
Location	chr8 : 14207969 .. 14208250 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACCACATCAACTTTCTCGAGCAGAACTATGTTCCCAAGACAGAGCTAGCTCAGGCTCAAGATATTTTAGCTCGTGCTAATCAACAATTAGTTGAGGTTAGACACAAGCTGGAATCTCGTCGGGCTGAAATTAACACATGCAAGGCTCAGTTGGAGGAGGCTGAATCTCGCCTCATTAATCCCGAATATTTAGTTGAGGAGTTCGAGAAGACAAAAGCATATACTAAAATGCAAGATGATATAATGGAATGCGGGGTTATTTGGTTGACTCGGTGA

mRNA sequence

ATGGCCAACCACATCAACTTTCTCGAGCAGAACTATGTTCCCAAGACAGAGCTAGCTCAGGCTCAAGATATTTTAGCTCGTGCTAATCAACAATTAGTTGAGGTTAGACACAAGCTGGAATCTCGTCGGGCTGAAATTAACACATGCAAGGCTCAGTTGGAGGAGGCTGAATCTCGCCTCATTAATCCCGAATATTTAGTTGAGGAGTTCGAGAAGACAAAAGCATATACTAAAATGCAAGATGATATAATGGAATGCGGGGTTATTTGGTTGACTCGGTGA

Coding sequence (CDS)

ATGGCCAACCACATCAACTTTCTCGAGCAGAACTATGTTCCCAAGACAGAGCTAGCTCAGGCTCAAGATATTTTAGCTCGTGCTAATCAACAATTAGTTGAGGTTAGACACAAGCTGGAATCTCGTCGGGCTGAAATTAACACATGCAAGGCTCAGTTGGAGGAGGCTGAATCTCGCCTCATTAATCCCGAATATTTAGTTGAGGAGTTCGAGAAGACAAAAGCATATACTAAAATGCAAGATGATATAATGGAATGCGGGGTTATTTGGTTGACTCGGTGA

Protein sequence

MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKLESRRAEINTCKAQLEEAESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR

Homology

[Close]

BLAST of Bhi08G000340 vs. TrEMBL
Match: tr|A0A1S3C5B2|A0A1S3C5B2_CUCME (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1   MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
           M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 230 MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEA 289

Query: 61  ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
           +S+L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 290 KSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 319

[Close]

BLAST of Bhi08G000340 vs. TrEMBL
Match: tr|A0A1S4E2A9|A0A1S4E2A9_CUCME (uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1   MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
           M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 185 MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEA 244

Query: 61  ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
           +S+L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 245 KSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 274

[Close]

BLAST of Bhi08G000340 vs. TrEMBL
Match: tr|A0A1S3C5V5|A0A1S3C5V5_CUCME (uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1   MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
           M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 197 MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEA 256

Query: 61  ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
           +S+L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 257 KSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 286

[Close]

BLAST of Bhi08G000340 vs. TrEMBL
Match: tr|A0A0A0LXX2|A0A0A0LXX2_CUCSA (Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
          M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 1  MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEA 60

Query: 61 ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
          +S L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 61 KSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 90

[Close]

BLAST of Bhi08G000340 vs. NCBI nr
Match: XP_008457530.1 (PREDICTED: uncharacterized protein LOC103497199 isoform X1 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1   MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
           M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 230 MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEA 289

Query: 61  ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
           +S+L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 290 KSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 319

[Close]

BLAST of Bhi08G000340 vs. NCBI nr
Match: XP_008457532.1 (PREDICTED: uncharacterized protein LOC103497199 isoform X2 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1   MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
           M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 197 MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEA 256

Query: 61  ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
           +S+L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 257 KSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 286

[Close]

BLAST of Bhi08G000340 vs. NCBI nr
Match: XP_016902110.1 (PREDICTED: uncharacterized protein LOC103497199 isoform X3 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1   MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
           M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 185 MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEA 244

Query: 61  ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
           +S+L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 245 KSQLSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 274

[Close]

BLAST of Bhi08G000340 vs. NCBI nr
Match: KGN65677.1 (Secretion protein HlyD family protein [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
          M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 1  MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEA 60

Query: 61 ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
          +S L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 61 KSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 90

[Close]

BLAST of Bhi08G000340 vs. NCBI nr
Match: XP_011657959.1 (PREDICTED: uncharacterized protein LOC105435920, partial [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1   MANHINFLEQNYVPKTELAQAQDILARANQQLVEVRHKL----ESRRAEINTCKAQLEEA 60
           M + +N L  NYVP+ E       L RAN++L E + +L     S + +I+  KAQL EA
Sbjct: 160 MGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEA 219

Query: 61  ESRLINPEYLVEEFEKTKAYTKMQDDIMECGVIWLTR 94
           +S L + + L E+F KT+ +  MQ+ IMECGV W  R
Sbjct: 220 KSELSDAKCLAEKFSKTEEFVVMQNKIMECGVNWSVR 249

The following BLAST results are available for this feature:

BLAST of Bhi08G000340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5B2\|A0A1S3C5B2_CUCME	1.6e-07	41.24	uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E2A9\|A0A1S4E2A9_CUCME	1.6e-07	41.24	uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C5V5\|A0A1S3C5V5_CUCME	1.6e-07	41.24	uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LXX2\|A0A0A0LXX2_CUCSA	2.1e-07	41.24	Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250...	[more]

BLAST of Bhi08G000340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457530.1	2.5e-07	41.24	PREDICTED: uncharacterized protein LOC103497199 isoform X1 [Cucumis melo]	[more]
XP_008457532.1	2.5e-07	41.24	PREDICTED: uncharacterized protein LOC103497199 isoform X2 [Cucumis melo]	[more]
XP_016902110.1	2.5e-07	41.24	PREDICTED: uncharacterized protein LOC103497199 isoform X3 [Cucumis melo]	[more]
KGN65677.1	3.2e-07	41.24	Secretion protein HlyD family protein [Cucumis sativus]	[more]
XP_011657959.1	3.2e-07	41.24	PREDICTED: uncharacterized protein LOC105435920, partial [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000340	Bhi08M000340	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G000340	CSPI01G22550	Wild cucumber (PI 183967)	cpiwgoB041
Bhi08G000340	Cucsa.213530	Cucumber (Gy14) v1	cgywgoB441
Bhi08G000340	CsGy1G022130	Cucumber (Gy14) v2	cgybwgoB038
Bhi08G000340	MELO3C020693.2	Melon (DHL92) v3.6.1	medwgoB186
Bhi08G000340	CsaV3_1G033720	Cucumber (Chinese Long) v3	cucwgoB044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000340	Cucurbita maxima (Rimu)	cmawgoB0272
Bhi08G000340	Cucurbita maxima (Rimu)	cmawgoB0589
Bhi08G000340	Cucurbita moschata (Rifu)	cmowgoB0266
Bhi08G000340	Cucurbita moschata (Rifu)	cmowgoB0586
Bhi08G000340	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000340	Cucurbita pepo (Zucchini)	cpewgoB0708
Bhi08G000340	Cucumber (Chinese Long) v2	cuwgoB041
Bhi08G000340	Bottle gourd (USVL1VR-Ls)	lsiwgoB259
Bhi08G000340	Melon (DHL92) v3.5.1	mewgoB183
Bhi08G000340	Watermelon (Charleston Gray)	wcgwgoB317
Bhi08G000340	Watermelon (Charleston Gray)	wcgwgoB354
Bhi08G000340	Watermelon (97103) v2	wgowmbB469
Bhi08G000340	Watermelon (97103) v2	wgowmbB484
Bhi08G000340	Watermelon (97103) v1	wgowmB485
Bhi08G000340	Watermelon (97103) v1	wgowmB522
Bhi08G000340	Silver-seed gourd	carwgoB0533
Bhi08G000340	Silver-seed gourd	carwgoB0860