Bhi06G000655 (gene) Wax gourd

NameBhi06G000655
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRNA binding protein
Locationchr6 : 17958082 .. 17958537 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCATCAGAGCGGAGCAGAGATGATTGATTCTCCGTCCCTTCACTGCCCTTTCAGCACGATTTGGCCGTCACTGCATCACAGTTGGCATTACAATTCTCCCAAATCGACAAAATTCCGGCCACCCCATTTCAGTTTGTCTCTTGTCCATGGCTCAGGACCAATGGGGTTTCCTGTTTTTGCCATGAAGAGGTCTGGGAAAGGCGGCATTGCCCTCACTGAACAGAGTGATTCCGACATTGAGTTCGATGAATTTTTTGATGAGGATGAAGATGATTTTCAGGACGAGGATGAAGATGAAATTCTTTTGCCGTTGAAGAACACGAGAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAATGAGTATGATACATCGATTGAAGACAAATTGTTGCAAGAAATGAAGCAGAGTAGGGAAGCTCAGACTGCAAATATCAATAAGCTCTAG

mRNA sequence

GTTCATCAGAGCGGAGCAGAGATGATTGATTCTCCGTCCCTTCACTGCCCTTTCAGCACGATTTGGCCGTCACTGCATCACAGTTGGCATTACAATTCTCCCAAATCGACAAAATTCCGGCCACCCCATTTCAGTTTGTCTCTTGTCCATGGCTCAGGACCAATGGGGTTTCCTGTTTTTGCCATGAAGAGGTCTGGGAAAGGCGGCATTGCCCTCACTGAACAGAGTGATTCCGACATTGAGTTCGATGAATTTTTTGATGAGGATGAAGATGATTTTCAGGACGAGGATGAAGATGAAATTCTTTTGCCGTTGAAGAACACGAGAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAATGAGTATGATACATCGATTGAAGACAAATTGTTGCAAGAAATGAAGCAGAGTAGGGAAGCTCAGACTGCAAATATCAATAAGCTCTAG

Coding sequence (CDS)

GTTCATCAGAGCGGAGCAGAGATGATTGATTCTCCGTCCCTTCACTGCCCTTTCAGCACGATTTGGCCGTCACTGCATCACAGTTGGCATTACAATTCTCCCAAATCGACAAAATTCCGGCCACCCCATTTCAGTTTGTCTCTTGTCCATGGCTCAGGACCAATGGGGTTTCCTGTTTTTGCCATGAAGAGGTCTGGGAAAGGCGGCATTGCCCTCACTGAACAGAGTGATTCCGACATTGAGTTCGATGAATTTTTTGATGAGGATGAAGATGATTTTCAGGACGAGGATGAAGATGAAATTCTTTTGCCGTTGAAGAACACGAGAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAATGAGTATGATACATCGATTGAAGACAAATTGTTGCAAGAAATGAAGCAGAGTAGGGAAGCTCAGACTGCAAATATCAATAAGCTCTAG

Protein sequence

VHQSGAEMIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVFAMKRSGKGGIALTEQSDSDIEFDEFFDEDEDDFQDEDEDEILLPLKNTREWHAARPRGFGEGNEYDTSIEDKLLQEMKQSREAQTANINKL
BLAST of Bhi06G000655 vs. TAIR10
Match: AT1G70200.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-09
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 104 PLKNTREWHAARPRGFGEGNEYDTSIEDKLLQEMKQSREAQTANINKL 152
           P+   ++W   +PRGFG G +Y+T IEDKLL E++QS +AQ AN+NKL
Sbjct: 113 PMDKMKKWLEKKPRGFGLGKKYETLIEDKLLDEIEQSWKAQAANLNKL 160

BLAST of Bhi06G000655 vs. TrEMBL
Match: tr|A0A0A0KS07|A0A0A0KS07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488780 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.6e-52
Identity = 108/151 (71.52%), Postives = 116/151 (76.82%), Query Frame = 0

Query: 1   VHQSGAEMIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVF 60
           V+ +GAEM DS  LHCPF+TI P L HS HYNS  STKFRPPH +LSL+  SGPMGFPVF
Sbjct: 34  VYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVF 93

Query: 61  AMKRSGKGGIALTEQSDSDIEFDEFFXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFG 120
           A+KR GKGGIALTE SDSDI FDEFF              ILLPLKNT+EWHAARPRGFG
Sbjct: 94  AVKRLGKGGIALTEPSDSDIGFDEFF--DEGEDNFQDEDDILLPLKNTKEWHAARPRGFG 153

Query: 121 EGNEYDTSIEDKLLQEMKQSREAQTANINKL 152
           EG  YDTSIED LLQEM+Q REAQ ANINKL
Sbjct: 154 EGKVYDTSIEDNLLQEMEQIREAQAANINKL 182

BLAST of Bhi06G000655 vs. TrEMBL
Match: tr|A0A0A0KQN3|A0A0A0KQN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.6e-52
Identity = 108/151 (71.52%), Postives = 116/151 (76.82%), Query Frame = 0

Query: 1   VHQSGAEMIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVF 60
           V+ +GAEM DS  LHCPF+TI P L HS HYNS  STKFRPPH +LSL+  SGPMGFPVF
Sbjct: 34  VYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVF 93

Query: 61  AMKRSGKGGIALTEQSDSDIEFDEFFXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFG 120
           A+KR GKGGIALTE SDSDI FDEFF              ILLPLKNT+EWHAARPRGFG
Sbjct: 94  AVKRLGKGGIALTEPSDSDIGFDEFF--DEGEDNFQDEDDILLPLKNTKEWHAARPRGFG 153

Query: 121 EGNEYDTSIEDKLLQEMKQSREAQTANINKL 152
           EG  YDTSIED LLQEM+Q REAQ ANINKL
Sbjct: 154 EGKVYDTSIEDNLLQEMEQIREAQAANINKL 182

BLAST of Bhi06G000655 vs. TrEMBL
Match: tr|A0A1S3CPG6|A0A1S3CPG6_CUCME (uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.5e-50
Identity = 120/150 (80.00%), Postives = 127/150 (84.67%), Query Frame = 0

Query: 8   MIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVFAMKRSGK 67
           M+DS  LHC F+TI P L HS HYNS  STKFRPPH +LSL+ GSGPMGFPVFAMKR GK
Sbjct: 1   MLDSTPLHCRFTTIRPLLQHSCHYNSSNSTKFRPPHLNLSLIQGSGPMGFPVFAMKRLGK 60

Query: 68  GGIALTEQSDSDIEFDEFF------XXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGE 127
           GGIALT+ SDSDI+FDEFF      XXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGE
Sbjct: 61  GGIALTQPSDSDIDFDEFFXXXXXXXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGE 120

Query: 128 GNEYDTSIEDKLLQEMKQSREAQTANINKL 152
           G  YDTSIEDKLLQEM+Q REAQ ANINKL
Sbjct: 121 GKVYDTSIEDKLLQEMEQIREAQAANINKL 150

BLAST of Bhi06G000655 vs. TrEMBL
Match: tr|A0A2P5BCQ5|A0A2P5BCQ5_PARAD (Nucleotide-binding alpha-beta plait domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251110 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.6e-14
Identity = 66/124 (53.23%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 34  PKSTKFRPPHFSLSLVHGSGPMGFPVFAMKRSGKGGIALTEQSDSDIEF------DEFFX 93
           P   +FR  H + S V      GF V A K+ GK G+ L E    D E       DE   
Sbjct: 49  PSLRQFRHTHLAFSAVCSQRRNGFGVNASKKQGKRGVELLEMEGFDDELGAGVYGDE--- 108

Query: 94  XXXXXXXXXXXXXILLPLKNTREWHAARPRGFGEGNEYDTSIEDKLLQEMKQSREAQTAN 152
           XXXXXXXXXXXXX+LLPL+  ++W   +PRGFGEG  YDTSIED LL+EM+QSR AQ AN
Sbjct: 109 XXXXXXXXXXXXXMLLPLEKMKKWLENKPRGFGEGKVYDTSIEDNLLEEMQQSRLAQAAN 168

BLAST of Bhi06G000655 vs. TrEMBL
Match: tr|A0A2J6LGB7|A0A2J6LGB7_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_8X160241 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 72/137 (52.55%), Postives = 85/137 (62.04%), Query Frame = 0

Query: 17  PFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVFAMKRSGK--GGIALTE 76
           P S   P LH +  ++S  S +  P H  LS  H     GFPVFA K S K    I  TE
Sbjct: 16  PISPTSPLLHSNKTHHSFFSIQL-PKHKLLSF-HVKLSSGFPVFASKTSIKVETNIPETE 75

Query: 77  QSDSDIEFDEFFXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGEGNEYDTSIEDKLL 136
            SD         XXXXXXXXXXXXXXI +PLKN R+W   +P+GFGEG EYDTS+EDKLL
Sbjct: 76  NSDFXXXXXXXXXXXXXXXXXXXXXXIFVPLKNMRQWTRNKPQGFGEGKEYDTSVEDKLL 135

Query: 137 QEMKQSREAQTANINKL 152
           +E++QSR AQ AN+  L
Sbjct: 136 EELEQSRVAQLANVTNL 150

BLAST of Bhi06G000655 vs. NCBI nr
Match: KGN51202.1 (hypothetical protein Csa_5G488780 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 7.0e-52
Identity = 108/151 (71.52%), Postives = 116/151 (76.82%), Query Frame = 0

Query: 1   VHQSGAEMIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVF 60
           V+ +GAEM DS  LHCPF+TI P L HS HYNS  STKFRPPH +LSL+  SGPMGFPVF
Sbjct: 34  VYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVF 93

Query: 61  AMKRSGKGGIALTEQSDSDIEFDEFFXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFG 120
           A+KR GKGGIALTE SDSDI FDEFF              ILLPLKNT+EWHAARPRGFG
Sbjct: 94  AVKRLGKGGIALTEPSDSDIGFDEFF--DEGEDNFQDEDDILLPLKNTKEWHAARPRGFG 153

Query: 121 EGNEYDTSIEDKLLQEMKQSREAQTANINKL 152
           EG  YDTSIED LLQEM+Q REAQ ANINKL
Sbjct: 154 EGKVYDTSIEDNLLQEMEQIREAQAANINKL 182

BLAST of Bhi06G000655 vs. NCBI nr
Match: KGN51204.1 (hypothetical protein Csa_5G488800 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 7.0e-52
Identity = 108/151 (71.52%), Postives = 116/151 (76.82%), Query Frame = 0

Query: 1   VHQSGAEMIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVF 60
           V+ +GAEM DS  LHCPF+TI P L HS HYNS  STKFRPPH +LSL+  SGPMGFPVF
Sbjct: 34  VYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVF 93

Query: 61  AMKRSGKGGIALTEQSDSDIEFDEFFXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFG 120
           A+KR GKGGIALTE SDSDI FDEFF              ILLPLKNT+EWHAARPRGFG
Sbjct: 94  AVKRLGKGGIALTEPSDSDIGFDEFF--DEGEDNFQDEDDILLPLKNTKEWHAARPRGFG 153

Query: 121 EGNEYDTSIEDKLLQEMKQSREAQTANINKL 152
           EG  YDTSIED LLQEM+Q REAQ ANINKL
Sbjct: 154 EGKVYDTSIEDNLLQEMEQIREAQAANINKL 182

BLAST of Bhi06G000655 vs. NCBI nr
Match: XP_008465688.1 (PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465689.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465690.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465692.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_016903478.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 3.9e-50
Identity = 120/150 (80.00%), Postives = 127/150 (84.67%), Query Frame = 0

Query: 8   MIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVFAMKRSGK 67
           M+DS  LHC F+TI P L HS HYNS  STKFRPPH +LSL+ GSGPMGFPVFAMKR GK
Sbjct: 1   MLDSTPLHCRFTTIRPLLQHSCHYNSSNSTKFRPPHLNLSLIQGSGPMGFPVFAMKRLGK 60

Query: 68  GGIALTEQSDSDIEFDEFF------XXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGE 127
           GGIALT+ SDSDI+FDEFF      XXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGE
Sbjct: 61  GGIALTQPSDSDIDFDEFFXXXXXXXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGE 120

Query: 128 GNEYDTSIEDKLLQEMKQSREAQTANINKL 152
           G  YDTSIEDKLLQEM+Q REAQ ANINKL
Sbjct: 121 GKVYDTSIEDKLLQEMEQIREAQAANINKL 150

BLAST of Bhi06G000655 vs. NCBI nr
Match: XP_011655304.1 (PREDICTED: uncharacterized protein LOC105435514 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 104/144 (72.22%), Postives = 110/144 (76.39%), Query Frame = 0

Query: 8   MIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVFAMKRSGK 67
           M DS  LHCPF+TI P L HS HYNS  STKFRPPH +LSL+  SGPMGFPVFA+KR GK
Sbjct: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGK 60

Query: 68  GGIALTEQSDSDIEFDEFFXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGEGNEYDT 127
           GGIALTE SDSDI FDEFF              ILLPLKNT+EWHAARPRGFGEG  YDT
Sbjct: 61  GGIALTEPSDSDIGFDEFF--DEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDT 120

Query: 128 SIEDKLLQEMKQSREAQTANINKL 152
           SIED LLQEM+Q REAQ ANINKL
Sbjct: 121 SIEDNLLQEMEQIREAQAANINKL 142

BLAST of Bhi06G000655 vs. NCBI nr
Match: XP_011655307.1 (PREDICTED: uncharacterized protein LOC101210443 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 104/144 (72.22%), Postives = 110/144 (76.39%), Query Frame = 0

Query: 8   MIDSPSLHCPFSTIWPSLHHSWHYNSPKSTKFRPPHFSLSLVHGSGPMGFPVFAMKRSGK 67
           M DS  LHCPF+TI P L HS HYNS  STKFRPPH +LSL+  SGPMGFPVFA+KR GK
Sbjct: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGK 60

Query: 68  GGIALTEQSDSDIEFDEFFXXXXXXXXXXXXXXILLPLKNTREWHAARPRGFGEGNEYDT 127
           GGIALTE SDSDI FDEFF              ILLPLKNT+EWHAARPRGFGEG  YDT
Sbjct: 61  GGIALTEPSDSDIGFDEFF--DEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDT 120

Query: 128 SIEDKLLQEMKQSREAQTANINKL 152
           SIED LLQEM+Q REAQ ANINKL
Sbjct: 121 SIEDNLLQEMEQIREAQAANINKL 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT1G70200.14.0e-0954.17RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KS07|A0A0A0KS07_CUCSA4.6e-5271.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488780 PE=4 SV=1[more]
tr|A0A0A0KQN3|A0A0A0KQN3_CUCSA4.6e-5271.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1[more]
tr|A0A1S3CPG6|A0A1S3CPG6_CUCME2.5e-5080.00uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=... [more]
tr|A0A2P5BCQ5|A0A2P5BCQ5_PARAD6.6e-1453.23Nucleotide-binding alpha-beta plait domain containing protein OS=Parasponia ande... [more]
tr|A0A2J6LGB7|A0A2J6LGB7_LACSA1.1e-1352.55Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_8X160241 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN51202.17.0e-5271.52hypothetical protein Csa_5G488780 [Cucumis sativus][more]
KGN51204.17.0e-5271.52hypothetical protein Csa_5G488800 [Cucumis sativus][more]
XP_008465688.13.9e-5080.00PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465689.1 P... [more]
XP_011655304.13.3e-4972.22PREDICTED: uncharacterized protein LOC105435514 [Cucumis sativus][more]
XP_011655307.13.3e-4972.22PREDICTED: uncharacterized protein LOC101210443 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000655Bhi06M000655mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..151
NoneNo IPR availablePANTHERPTHR37200FAMILY NOT NAMEDcoord: 22..151

The following gene(s) are paralogous to this gene:

None